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LOCUS XM_017160481 6152 bp mRNA linear INV 09-DEC-2024 (Ptp10D), transcript variant X4, mRNA. ACCESSION XM_017160481 VERSION XM_017160481.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160481.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6152 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6152 /gene="Ptp10D" /note="Protein tyrosine phosphatase 10D; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108070134" CDS 645..5321 /gene="Ptp10D" /codon_start=1 /product="tyrosine-protein phosphatase 10D isoform X4" /protein_id="XP_017015970.2" /db_xref="GeneID:108070134" /translation="MLYQLSKATTRIRLKRQKAVPQHCWLWSLAFLAAFTLKDVRCAD LAISIPNNPGLDDGASYRLDYSPPFGYPEPNTTIASREIGDEIQFSRALPGTKYNFWL YYTNFTHHDWLTWTVTITTAPDPPSNLSVQVRSGKNAIILWSPPTQGSYTAFKIKVLG LSEASSSYNRTFQVNDNTFQHSVKELTPGATYQVQAYTIYDGKESVAYTSRNFTTKPN TPGKFIVWFRNETTLLVLWQPPYPAGIYTHYKVSIEPPDANDSVLYVEKEGEPPGPAQ AAFKGLVPGRAYNISVQTMSEDEISLPTTAQYRTVPLRPLNVTFDRDFITSNSFRVLW EAPKGVSEFDKYQVSVATTRRQSTVPRSNEPVAFFDFRDIAEPGKTFNVIVKTVSGKV TSWPATGDVTLRPLPVRNLRSINDDKTNTMVITWEADPASTQDEYRIVYHELETFNGD TSTLTTDRTRFTLESLLPGRNYSLSVQAVSKKMESNETSIFVVTRPSSPIIEDLKSIR MGLNISWKSDVNSKQEQYEVLYSRNGTSDLRTQKTKESRLVIKNLQPGAGYELKVFAV SHDLRSEPHAYFQAVYPNPPRNMTIETVRSNSVLVHWSPPESGEFTEYSIRYRTDSEQ QWVRLPSVRSTEADITDMTKGEKYTIQVNTVSFGVESPVPQEVNTTVPPNPVSNIIQL VDSRNITLEWPKPEGRVESYILKWWPSDNPGRVQTKNVSENKSADDLSTVRVLIGELM PGVQYKFDIQTTSYGILSGITSLYPRTMPLIQSDVVVANGEKEDERDTITLSYTPTPQ SSSKFDIYRFSLGDAEIRDKEKLANDTDRKVTFTGLVPGRLYNITVWTVSGGVASLPI QRQDRLYPEPITQLHATNITDTEISLRWDLPKGEYNDFDIAYLTADNLLAQNMTIRNE ITISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASFTTNEAVPGRVERFHPTDVQPS EINFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEEAFGVIKNLKPGETYVF KIQAKTAIGFGPEREYRQTMPILAPPRPATQVVPTEVYRSSSTIQIRFRKNYFSDQNG QVRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQAIDPYYPFENQSVEDFTIGT ENCDNHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFPIQTDQDNTSLIVAITV PLTIILVLLVTLLFYKRRRNNCRKTTKDSRANDNMSLPDSVIEQNRPILIKNFAEHYR LMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDD DEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGR EKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRGSEQRILRHFHFTTWPD FGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDYV DIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVLEGKENIVGPAREMHDNEGYEDDEG IAESGM" misc_feature order(1011..1013,1206..1208,1251..1253) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 1014..1259 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature order(1254..1259,1263..1268) /gene="Ptp10D" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature order(1293..1295,1494..1496,1539..1541) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 1302..1556 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 1476..>2846 /gene="Ptp10D" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(1542..1547,1551..1556) /gene="Ptp10D" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature <2298..3434 /gene="Ptp10D" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(3516..3518,3714..3716,3759..3761) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 3519..3773 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 3891..4205 /gene="Ptp10D" /note="TM proximal of protein tyrosine phosphatase, receptor type J; Region: PTP_tm; pfam18861" /db_xref="CDD:465889" misc_feature 4545..5210 /gene="Ptp10D" /note="catalytic domain of R3 subfamily receptor-type tyrosine-protein phosphatases and similar proteins; Region: R3-PTPc; cd14548" /db_xref="CDD:350396" polyA_site 6152 /gene="Ptp10D" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aaaagtgcat ttctggccga cgggtttgtt gctgggtttg ggggttccaa ttcgaattcg 61 gaacgggcga agacgagaca aaacggtgcg cccgcaaacg ctcgaaaacg caaaattttg 121 tcggtgtccg ttccgctttt tctgcgtctg tgtctccgtc gcgtgtgcgt gcgcgcgtgt 181 ctgtgttcgt tttttgttat tttttttaaa ccaacgacaa cacataatat tattaaaata 241 cacaaaaatt tcggtgatta tatttaaatg attttgtttt ggtggcgttt tgaatgagaa 301 aagctgagag gcgcagtgga aaacatcaca aataaaatgt tttaatcaat taaacaaaaa 361 aaaaaaaaac aacaacaaaa tttcaactaa ttggatccag aagaaaatac aaaattcaat 421 cgcgctgacg acaaataatt gtgaaaacaa tgcatttaat taaagtaaag actaaactcg 481 cgctgaaaat gcccgaaatc aaaagaaact agcgagaaac acaatcaaaa aatcgcacaa 541 caaatcgcaa aagttaacaa aaaatccaaa taaattaagc cagacaacaa aagagagcca 601 ggagcagaga acgacagcga aaacagcaaa acgacggccc caaaatgttg taccagctaa 661 gtaaagccac tactagaatc cgactcaaaa ggcaaaaagc cgttccacaa cattgctggc 721 tctggagttt agcatttctg gcagcattta ctctaaagga cgttcgatgt gcagatctag 781 ccataagcat acccaacaat cccggcctgg acgatggggc ctcctatcgg ttggactaca 841 gtccgccctt cggctatccg gagcccaaca cgacgattgc ctcccgggaa atcggcgatg 901 agatccaatt ctcacgcgcc ctgcccggca ccaaatacaa cttctggctg tactacacga 961 acttcacgca ccacgattgg ctcacctgga cggtgacgat aacaacagct cccgatccgc 1021 cgtcgaacct ctctgtccag gtgcggagcg gcaagaacgc catcatcctg tggtccccgc 1081 ccacccaggg cagctacacg gccttcaaga tcaaggtgct gggcctgtcg gaggcctcga 1141 gcagctacaa ccgcaccttc caggtcaacg acaacacatt ccagcacagc gtcaaggagc 1201 tgaccccggg agccacctac caggtgcagg cctataccat ctacgatggc aaggagtcgg 1261 tggcctacac cagtcgcaat ttcaccacaa agcccaacac tccggggaaa ttcatcgtct 1321 ggttccgtaa tgagacgacg ctgctggtcc tgtggcaacc gccgtatccg gcgggcattt 1381 acacgcacta caaggtgtcc atcgagccgc cggacgccaa cgacagtgtt ctgtatgtgg 1441 agaaggaggg cgagccgccc ggtccggcgc aggcggcctt caagggtctg gtgcccggca 1501 gggcctacaa tatatccgtg cagacgatgt ccgaggacga gatctcgctg ccgacgacgg 1561 cacaatatcg aacggtgccg ctgcgaccct tgaacgtgac cttcgatagg gatttcatca 1621 cctccaattc gttccgggtg ctttgggagg cgcccaaggg cgtctccgag ttcgacaaat 1681 atcaggtttc ggtggccacc acccgcaggc agtccaccgt gccgcggagc aacgagccgg 1741 tggccttctt cgactttcgc gacatcgccg agccgggcaa gacgttcaat gtgatcgtga 1801 agacggtctc cggcaaggtc acctcgtggc cagccaccgg cgatgtgacc ctgcgacccc 1861 tgcccgttcg caacctgagg agcatcaacg atgacaagac taacaccatg gtcatcacct 1921 gggaggcgga tccggcgagc acgcaggatg agtaccgcat agtctaccat gagttggaga 1981 cattcaatgg agacaccagc accctgacca cagaccgaac tcgattcacg ctggagagcc 2041 ttctgccggg ccgcaactac tcgctatccg tgcaggcggt ctccaagaag atggaatcga 2101 acgagaccag catcttcgtg gtcacccgcc cctcgtcgcc catcatcgag gacctgaaga 2161 gcatacggat gggcctgaat atcagttgga agagcgacgt gaactcgaaa caggagcaat 2221 acgaggtgtt gtactcacgc aacggaacca gcgatttgcg cacccagaag accaaggaat 2281 cgcgactggt gatcaagaat ctgcagccgg gagctggata tgaactgaag gtctttgcgg 2341 ttagccacga tttgcgaagt gaaccgcatg cctacttcca ggcagtttat cccaatccgc 2401 cacgcaacat gaccatcgag acggtgcgca gcaactcggt tctggtccac tggtcgccgc 2461 cggaaagcgg tgagttcacc gaatactcga ttcgctatcg aacggacagc gaacagcaat 2521 gggtgcgcct gcccagcgtc cgatcgacgg aggcggacat caccgatatg accaagggcg 2581 agaagtacac catccaggtg aacacggtga gctttggcgt cgagagtccc gtgccgcagg 2641 aggtgaacac gacggtgccg ccgaatccgg tgtcgaatat cattcagcta gttgactcac 2701 ggaacatcac gttggagtgg cccaagccgg agggtcgggt ggagtcgtac atccttaagt 2761 ggtggcccag cgataatccc ggtcgtgtgc agaccaagaa tgtctccgag aacaagtcgg 2821 ccgacgattt gtcgacggtg agagtgctga tcggcgaact gatgcccggg gtgcagtaca 2881 agttcgacat ccagacgacc tcctatggca tcctgtcggg catcaccagc ctctatccgc 2941 gcaccatgcc gctcatccag tcggacgtgg tggtggccaa tggcgagaag gaggacgagc 3001 gggacacgat caccctgagc tacacgccca cgccgcagtc gtcgtccaag ttcgatatct 3061 accgcttctc cctgggcgac gccgagatcc gggacaagga gaagctggcc aacgacacgg 3121 atcgcaaggt gaccttcacg ggtctggtgc ccggacgtct gtacaacatc accgtgtgga 3181 cggtcagcgg cggagtggcc agcctgccga ttcagcgcca ggatcgcctc tatccggagc 3241 ccattaccca gctgcatgcc acgaatatca cggatacgga gatctcactg cgctgggatc 3301 tgccgaaggg cgagtacaat gactttgata ttgcctacct gacagcggac aatttgttgg 3361 cccagaacat gaccatccgg aatgagataa ccatcagcga tctgcgaccc cacaggaact 3421 acaccttcac cgtggtcgtt cgttccggca ccgaatcctc ggttctccgg agcagctcac 3481 ccctgtcggc cagcttcacc acaaacgagg cggttccggg tcgagtggag cgtttccatc 3541 ccaccgatgt tcagcccagc gagattaatt tcgagtggtc gctgccctcc agtgaggcga 3601 atggcgtgat tcgccaattc tcgatagcct atacgaatat caacaatctc acggacgccg 3661 gaatgcagga ctttgagtcg gaggaggcgt ttggggtgat caaaaacctg aagcccggcg 3721 aaacgtatgt gttcaagatt caggccaaaa cggccatcgg ttttggaccg gagcgggaat 3781 atcgacagac gatgccgata ttggcgccac cacgtcccgc cacccaggtg gtgcccaccg 3841 aggtctatcg cagctcgtcg accatccaga ttcgcttccg gaagaactac ttctccgatc 3901 agaacggcca ggtgcgcatg tacacgatca ttgtggcgga ggacgatgcc aagaatgcct 3961 ccggcctgga gatgcccagc tggctggacg tgcagtcgta tagcgtctgg ctgccctacc 4021 aggccatcga tccgtactat ccgttcgaga accagtcggt ggaggacttt accatcggca 4081 ccgagaactg tgacaaccac aagattggct actgcaacgg accactgaag tcgggcacca 4141 cctaccgcgt gaaggtgcga gcgttcaccg gagcggacaa gttcacggac accgcctaca 4201 gttttcccat tcagacggat caagacaaca cctccctgat cgtggccatc acagtgccgc 4261 tgaccatcat cctggtgctc ctggtcaccc tgctgttcta caagcggcga cgcaacaatt 4321 gccgcaagac caccaaggat tcgcgggcca atgacaatat gtcgctgccg gacagtgtga 4381 tcgagcagaa tcgcccgata ctgatcaaga actttgcgga gcactaccgc ctgatgtccg 4441 ccgactcgga cttccgtttc agcgaggagt tcgaggagct gaagcacgtg ggccgcgatc 4501 agccgtgcac ctttgccgac ctgccctgca atcggccgaa gaaccggttc accaacatcc 4561 tgccctacga ccactcgcgc ttcaagctcc agcctgtgga cgatgacgag ggcagcgact 4621 acatcaatgc caactatgtg cccgggcaca attcgccgcg ggagttcatc gtcacccagg 4681 gaccgctgca ctcgacgcgc gacgacttct ggcggatgtg ctgggagagc aactcgcggg 4741 ccatcgtcat gctgacccgg tgcttcgaga agggacgcga gaagtgcgac cagtactggc 4801 ccaatgacac ggtgcccgtc ttctacggcg acatcaaggt gcagattctc aacgacagcc 4861 actacgccga ctgggtgatg accgagttta tgctgtgcag gggcagcgaa cagcgcatcc 4921 tgcggcactt ccatttcacc acctggccgg actttggggt gcccaatccg ccgcagaccc 4981 tcgtccgctt cgtgcgcgcc ttccgcgatc gcatcggggc cgagcagcga cccattgtgg 5041 tccactgcag cgccggagtg ggaaggtcgg gcaccttcat cactttggat cgcatcctgc 5101 agcagattaa cacgtccgac tatgtggaca tcttcggcat agtgtatgcc atgcgcaagg 5161 agcgcgtttg gatggtgcag acggagcagc agtacatctg catccaccag tgcctgctgg 5221 cggtgctcga gggcaaggag aacatcgtgg gtcccgctcg cgagatgcac gacaacgagg 5281 gctacgaaga tgacgagggc attgccgagt cgggcatgta agcccattcc agagcccagg 5341 aactccagaa actccagccc atcccaacca ctcaactcaa cgaaactcaa ccgaatggaa 5401 cccaacccaa ccagcatgtg gcaactacat tattatttac ttaaggagga aagtgcggag 5461 gatcaacgct tgatattata attggatata tgtgtgtact acaccggata ctactggata 5521 tatatactct acaccgatct atcgaatggg aatgcagcaa tctcgccaaa cagaacgaac 5581 acgcatcaat ttatacattt tatatatatc taagataacg aaggatcagc gatcggcgaa 5641 cactgaatac tggaatactg attgtatttt tacgctagcc acaatttgat ataaactata 5701 tatcttccaa tttttttgta cacctaatgt tagttgaaat atgtatgtga gcgagacgag 5761 caaatttttg tagcaaacta aaagcgctaa atgtttactt ttttatatta ttatatatat 5821 aaatacttga taaacatata cctaatatta ggcctaaact aaactaacta taaatcgcac 5881 acactcatac actcacacaa acacaatgca ataattgagt tacatagttt taaagaggaa 5941 gaaatgttaa aacatttggc tgcaaccgtc ggaatcgcaa gagatgtagt gtacaatttt 6001 taatttgtcg tatatgtatg attttttttc atttctgttt tgtgtttaat tttttttgta 6061 atttttatcc aagcgtaagc tgtgtatgta tgtgctacat ttttgtttaa ttatatcaag 6121 ttttatttaa aaaagaaacc aatcaaagac ca