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LOCUS XM_017160479 5675 bp mRNA linear INV 09-DEC-2024 (Ptp10D), transcript variant X2, mRNA. ACCESSION XM_017160479 VERSION XM_017160479.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017160479.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5675 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5675 /gene="Ptp10D" /note="Protein tyrosine phosphatase 10D; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108070134" CDS 646..5541 /gene="Ptp10D" /codon_start=1 /product="tyrosine-protein phosphatase 10D isoform X2" /protein_id="XP_017015968.2" /db_xref="GeneID:108070134" /translation="MLYQLSKATTRIRLKRQKAVPQHCWLWSLAFLAAFTLKDVRCAD LAISIPNNPGLDDGASYRLDYSPPFGYPEPNTTIASREIGDEIQFSRALPGTKYNFWL YYTNFTHHDWLTWTVTITTAPDPPSNLSVQVRSGKNAIILWSPPTQGSYTAFKIKVLG LSEASSSYNRTFQVNDNTFQHSVKELTPGATYQVQAYTIYDGKESVAYTSRNFTTKPN TPGKFIVWFRNETTLLVLWQPPYPAGIYTHYKVSIEPPDANDSVLYVEKEGEPPGPAQ AAFKGLVPGRAYNISVQTMSEDEISLPTTAQYRTVPLRPLNVTFDRDFITSNSFRVLW EAPKGVSEFDKYQVSVATTRRQSTVPRSNEPVAFFDFRDIAEPGKTFNVIVKTVSGKV TSWPATGDVTLRPLPVRNLRSINDDKTNTMVITWEADPASTQDEYRIVYHELETFNGD TSTLTTDRTRFTLESLLPGRNYSLSVQAVSKKMESNETSIFVVTRPSSPIIEDLKSIR MGLNISWKSDVNSKQEQYEVLYSRNGTSDLRTQKTKESRLVIKNLQPGAGYELKVFAV SHDLRSEPHAYFQAVYPNPPRNMTIETVRSNSVLVHWSPPESGEFTEYSIRYRTDSEQ QWVRLPSVRSTEADITDMTKGEKYTIQVNTVSFGVESPVPQEVNTTVPPNPVSNIIQL VDSRNITLEWPKPEGRVESYILKWWPSDNPGRVQTKNVSENKSADDLSTVRVLIGELM PGVQYKFDIQTTSYGILSGITSLYPRTMPLIQSDVVVANGEKEDERDTITLSYTPTPQ SSSKFDIYRFSLGDAEIRDKEKLANDTDRKVTFTGLVPGRLYNITVWTVSGGVASLPI QRQDRLYPEPITQLHATNITDTEISLRWDLPKGEYNDFDIAYLTADNLLAQNMTIRNE ITISDLRPHRNYTFTVVVRSGTESSVLRSSSPLSASFTTNEAVPGRVERFHPTDVQPS EINFEWSLPSSEANGVIRQFSIAYTNINNLTDAGMQDFESEEAFGVIKNLKPGETYVF KIQAKTAIGFGPEREYRQTMPILAPPRPATQVVPTEVYRSSSTIQIRFRKNYFSDQNG QVRMYTIIVAEDDAKNASGLEMPSWLDVQSYSVWLPYQAIDPYYPFENQSVEDFTIGT ENCDNHKIGYCNGPLKSGTTYRVKVRAFTGADKFTDTAYSFPIQTDQDNTSLIVAITV PLTIILVLLVTLLFYKRRRNNCRKTTKDSRANDNMSLPDSVIEQNRPILIKNFAEHYR LMSADSDFRFSEEFEELKHVGRDQPCTFADLPCNRPKNRFTNILPYDHSRFKLQPVDD DEGSDYINANYVPGHNSPREFIVTQGPLHSTRDDFWRMCWESNSRAIVMLTRCFEKGR EKCDQYWPNDTVPVFYGDIKVQILNDSHYADWVMTEFMLCRGSEQRILRHFHFTTWPD FGVPNPPQTLVRFVRAFRDRIGAEQRPIVVHCSAGVGRSGTFITLDRILQQINTSDYV DIFGIVYAMRKERVWMVQTEQQYICIHQCLLAVLEGKENIVGPAREMHDNEGYEGQQV QLDENGDVVATIEGHLSHHDLQQAEAEAIDDENAAILHDDQQPLTSSFTGHHNHMPPT TSMSSFVGAGGGINNVEAPDR" misc_feature order(1012..1014,1207..1209,1252..1254) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 1015..1260 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature order(1255..1260,1264..1269) /gene="Ptp10D" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature order(1294..1296,1495..1497,1540..1542) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 1303..1557 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 1477..>2847 /gene="Ptp10D" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(1543..1548,1552..1557) /gene="Ptp10D" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature <2299..3435 /gene="Ptp10D" /note="Fibronectin type 3 domain [General function prediction only]; Region: FN3; COG3401" /db_xref="CDD:442628" misc_feature order(3517..3519,3715..3717,3760..3762) /gene="Ptp10D" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature 3520..3774 /gene="Ptp10D" /note="Fibronectin type III domain; Region: fn3; pfam00041" /db_xref="CDD:394996" misc_feature 3892..4206 /gene="Ptp10D" /note="TM proximal of protein tyrosine phosphatase, receptor type J; Region: PTP_tm; pfam18861" /db_xref="CDD:465889" misc_feature 4546..5211 /gene="Ptp10D" /note="catalytic domain of R3 subfamily receptor-type tyrosine-protein phosphatases and similar proteins; Region: R3-PTPc; cd14548" /db_xref="CDD:350396" ORIGIN 1 aaaaagtgca tttctggccg acgggtttgt tgctgggttt gggggttcca attcgaattc 61 ggaacgggcg aagacgagac aaaacggtgc gcccgcaaac gctcgaaaac gcaaaatttt 121 gtcggtgtcc gttccgcttt ttctgcgtct gtgtctccgt cgcgtgtgcg tgcgcgcgtg 181 tctgtgttcg ttttttgtta ttttttttaa accaacgaca acacataata ttattaaaat 241 acacaaaaat ttcggtgatt atatttaaat gattttgttt tggtggcgtt ttgaatgaga 301 aaagctgaga ggcgcagtgg aaaacatcac aaataaaatg ttttaatcaa ttaaacaaaa 361 aaaaaaaaaa caacaacaaa atttcaacta attggatcca gaagaaaata caaaattcaa 421 tcgcgctgac gacaaataat tgtgaaaaca atgcatttaa ttaaagtaaa gactaaactc 481 gcgctgaaaa tgcccgaaat caaaagaaac tagcgagaaa cacaatcaaa aaatcgcaca 541 acaaatcgca aaagttaaca aaaaatccaa ataaattaag ccagacaaca aaagagagcc 601 aggagcagag aacgacagcg aaaacagcaa aacgacggcc ccaaaatgtt gtaccagcta 661 agtaaagcca ctactagaat ccgactcaaa aggcaaaaag ccgttccaca acattgctgg 721 ctctggagtt tagcatttct ggcagcattt actctaaagg acgttcgatg tgcagatcta 781 gccataagca tacccaacaa tcccggcctg gacgatgggg cctcctatcg gttggactac 841 agtccgccct tcggctatcc ggagcccaac acgacgattg cctcccggga aatcggcgat 901 gagatccaat tctcacgcgc cctgcccggc accaaataca acttctggct gtactacacg 961 aacttcacgc accacgattg gctcacctgg acggtgacga taacaacagc tcccgatccg 1021 ccgtcgaacc tctctgtcca ggtgcggagc ggcaagaacg ccatcatcct gtggtccccg 1081 cccacccagg gcagctacac ggccttcaag atcaaggtgc tgggcctgtc ggaggcctcg 1141 agcagctaca accgcacctt ccaggtcaac gacaacacat tccagcacag cgtcaaggag 1201 ctgaccccgg gagccaccta ccaggtgcag gcctatacca tctacgatgg caaggagtcg 1261 gtggcctaca ccagtcgcaa tttcaccaca aagcccaaca ctccggggaa attcatcgtc 1321 tggttccgta atgagacgac gctgctggtc ctgtggcaac cgccgtatcc ggcgggcatt 1381 tacacgcact acaaggtgtc catcgagccg ccggacgcca acgacagtgt tctgtatgtg 1441 gagaaggagg gcgagccgcc cggtccggcg caggcggcct tcaagggtct ggtgcccggc 1501 agggcctaca atatatccgt gcagacgatg tccgaggacg agatctcgct gccgacgacg 1561 gcacaatatc gaacggtgcc gctgcgaccc ttgaacgtga ccttcgatag ggatttcatc 1621 acctccaatt cgttccgggt gctttgggag gcgcccaagg gcgtctccga gttcgacaaa 1681 tatcaggttt cggtggccac cacccgcagg cagtccaccg tgccgcggag caacgagccg 1741 gtggccttct tcgactttcg cgacatcgcc gagccgggca agacgttcaa tgtgatcgtg 1801 aagacggtct ccggcaaggt cacctcgtgg ccagccaccg gcgatgtgac cctgcgaccc 1861 ctgcccgttc gcaacctgag gagcatcaac gatgacaaga ctaacaccat ggtcatcacc 1921 tgggaggcgg atccggcgag cacgcaggat gagtaccgca tagtctacca tgagttggag 1981 acattcaatg gagacaccag caccctgacc acagaccgaa ctcgattcac gctggagagc 2041 cttctgccgg gccgcaacta ctcgctatcc gtgcaggcgg tctccaagaa gatggaatcg 2101 aacgagacca gcatcttcgt ggtcacccgc ccctcgtcgc ccatcatcga ggacctgaag 2161 agcatacgga tgggcctgaa tatcagttgg aagagcgacg tgaactcgaa acaggagcaa 2221 tacgaggtgt tgtactcacg caacggaacc agcgatttgc gcacccagaa gaccaaggaa 2281 tcgcgactgg tgatcaagaa tctgcagccg ggagctggat atgaactgaa ggtctttgcg 2341 gttagccacg atttgcgaag tgaaccgcat gcctacttcc aggcagttta tcccaatccg 2401 ccacgcaaca tgaccatcga gacggtgcgc agcaactcgg ttctggtcca ctggtcgccg 2461 ccggaaagcg gtgagttcac cgaatactcg attcgctatc gaacggacag cgaacagcaa 2521 tgggtgcgcc tgcccagcgt ccgatcgacg gaggcggaca tcaccgatat gaccaagggc 2581 gagaagtaca ccatccaggt gaacacggtg agctttggcg tcgagagtcc cgtgccgcag 2641 gaggtgaaca cgacggtgcc gccgaatccg gtgtcgaata tcattcagct agttgactca 2701 cggaacatca cgttggagtg gcccaagccg gagggtcggg tggagtcgta catccttaag 2761 tggtggccca gcgataatcc cggtcgtgtg cagaccaaga atgtctccga gaacaagtcg 2821 gccgacgatt tgtcgacggt gagagtgctg atcggcgaac tgatgcccgg ggtgcagtac 2881 aagttcgaca tccagacgac ctcctatggc atcctgtcgg gcatcaccag cctctatccg 2941 cgcaccatgc cgctcatcca gtcggacgtg gtggtggcca atggcgagaa ggaggacgag 3001 cgggacacga tcaccctgag ctacacgccc acgccgcagt cgtcgtccaa gttcgatatc 3061 taccgcttct ccctgggcga cgccgagatc cgggacaagg agaagctggc caacgacacg 3121 gatcgcaagg tgaccttcac gggtctggtg cccggacgtc tgtacaacat caccgtgtgg 3181 acggtcagcg gcggagtggc cagcctgccg attcagcgcc aggatcgcct ctatccggag 3241 cccattaccc agctgcatgc cacgaatatc acggatacgg agatctcact gcgctgggat 3301 ctgccgaagg gcgagtacaa tgactttgat attgcctacc tgacagcgga caatttgttg 3361 gcccagaaca tgaccatccg gaatgagata accatcagcg atctgcgacc ccacaggaac 3421 tacaccttca ccgtggtcgt tcgttccggc accgaatcct cggttctccg gagcagctca 3481 cccctgtcgg ccagcttcac cacaaacgag gcggttccgg gtcgagtgga gcgtttccat 3541 cccaccgatg ttcagcccag cgagattaat ttcgagtggt cgctgccctc cagtgaggcg 3601 aatggcgtga ttcgccaatt ctcgatagcc tatacgaata tcaacaatct cacggacgcc 3661 ggaatgcagg actttgagtc ggaggaggcg tttggggtga tcaaaaacct gaagcccggc 3721 gaaacgtatg tgttcaagat tcaggccaaa acggccatcg gttttggacc ggagcgggaa 3781 tatcgacaga cgatgccgat attggcgcca ccacgtcccg ccacccaggt ggtgcccacc 3841 gaggtctatc gcagctcgtc gaccatccag attcgcttcc ggaagaacta cttctccgat 3901 cagaacggcc aggtgcgcat gtacacgatc attgtggcgg aggacgatgc caagaatgcc 3961 tccggcctgg agatgcccag ctggctggac gtgcagtcgt atagcgtctg gctgccctac 4021 caggccatcg atccgtacta tccgttcgag aaccagtcgg tggaggactt taccatcggc 4081 accgagaact gtgacaacca caagattggc tactgcaacg gaccactgaa gtcgggcacc 4141 acctaccgcg tgaaggtgcg agcgttcacc ggagcggaca agttcacgga caccgcctac 4201 agttttccca ttcagacgga tcaagacaac acctccctga tcgtggccat cacagtgccg 4261 ctgaccatca tcctggtgct cctggtcacc ctgctgttct acaagcggcg acgcaacaat 4321 tgccgcaaga ccaccaagga ttcgcgggcc aatgacaata tgtcgctgcc ggacagtgtg 4381 atcgagcaga atcgcccgat actgatcaag aactttgcgg agcactaccg cctgatgtcc 4441 gccgactcgg acttccgttt cagcgaggag ttcgaggagc tgaagcacgt gggccgcgat 4501 cagccgtgca cctttgccga cctgccctgc aatcggccga agaaccggtt caccaacatc 4561 ctgccctacg accactcgcg cttcaagctc cagcctgtgg acgatgacga gggcagcgac 4621 tacatcaatg ccaactatgt gcccgggcac aattcgccgc gggagttcat cgtcacccag 4681 ggaccgctgc actcgacgcg cgacgacttc tggcggatgt gctgggagag caactcgcgg 4741 gccatcgtca tgctgacccg gtgcttcgag aagggacgcg agaagtgcga ccagtactgg 4801 cccaatgaca cggtgcccgt cttctacggc gacatcaagg tgcagattct caacgacagc 4861 cactacgccg actgggtgat gaccgagttt atgctgtgca ggggcagcga acagcgcatc 4921 ctgcggcact tccatttcac cacctggccg gactttgggg tgcccaatcc gccgcagacc 4981 ctcgtccgct tcgtgcgcgc cttccgcgat cgcatcgggg ccgagcagcg acccattgtg 5041 gtccactgca gcgccggagt gggaaggtcg ggcaccttca tcactttgga tcgcatcctg 5101 cagcagatta acacgtccga ctatgtggac atcttcggca tagtgtatgc catgcgcaag 5161 gagcgcgttt ggatggtgca gacggagcag cagtacatct gcatccacca gtgcctgctg 5221 gcggtgctcg agggcaagga gaacatcgtg ggtcccgctc gcgagatgca cgacaacgag 5281 ggctacgaag gccaacaagt gcagctggac gagaacggcg atgtggtggc caccatcgag 5341 ggtcatttgt cgcaccacga cctccagcag gccgaggcgg aggccattga cgatgagaat 5401 gcggcgatac tgcacgatga ccagcagccg ctgaccagta gcttcactgg ccaccacaat 5461 cacatgccgc ccaccacatc gatgagctcc ttcgttggcg cagggggcgg cattaacaat 5521 gtggaagcgc cggatagatg acattcggtt gtcaaccaga gtgataacaa caattcggtg 5581 gttatcgtcc tggttgacaa caagcccagc tcgatgatct gcaaggacag caagggcggc 5641 aacatcgatg tcctggagca acagcagcag cagct