PREDICTED: Drosophila takahashii Nucleoporin 35kDa (Nup35), mRNA.

LOCUS       XM_017160122            1227 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_017160122
VERSION     XM_017160122.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017160122.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1227
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1227
                     /gene="Nup35"
                     /note="Nucleoporin 35kDa; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 2
                     Proteins"
                     /db_xref="GeneID:108069866"
     CDS             126..1127
                     /gene="Nup35"
                     /codon_start=1
                     /product="nucleoporin Nup35"
                     /protein_id="XP_017015611.1"
                     /db_xref="GeneID:108069866"
                     /translation="MEPMTLGSPVNSPGSNQSQYLPPFLLGDPQNLTPHKNTLSPKPG
                     GRYNVSFATSPGGAAGSSPHDFNRSAMNTRTLFGGGGGGGGVQGNGGHNVSLNQSGAH
                     GHHHHHHQAGPPTQGLFDSLREQAATPQQRSQLSLLNQSYQTNDSFAPGAPNAINASM
                     RALCSPLGAIASPGVIGTPVSNGNGNSRLADFWVTIFGFSPGASSMVLQHFTLCGTIV
                     DVVHAPQNGNWMHVRFSSRIESDKALNYNHKIIAGNVMVGVARCTERSVLDKENSSGL
                     ANAEATVASNQPTSPIRPFAQQSYKLARNENTISPSKDVPQKSSGLMDKAMDLIFGW"
     misc_feature    696..932
                     /gene="Nup35"
                     /note="Nup53/35/40-type RNA recognition motif; Region:
                     Nup35_RRM; pfam05172"
                     /db_xref="CDD:398713"
     misc_feature    order(708..710,714..719,804..812,867..869,873..875,
                     888..899,903..905)
                     /gene="Nup35"
                     /note="homodimer interface [polypeptide binding]; other
                     site"
                     /db_xref="CDD:409875"
     polyA_site      1227
                     /gene="Nup35"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 tttagcccaa gccgtgactg gtcacactgc aacgcacagc tgtggcgtcc tcatccgaaa
       61 ttgcaacgct ttttctcgat ttgacagcat tcccgcgctc gcctttgttt aaaactgtag
      121 ccaacatgga gccaatgacc ctgggcagcc cggtgaacag ccccggctcg aaccagagcc
      181 agtacctgcc gcccttcctg ctcggcgatc cgcaaaacct aacgccgcac aagaacacgc
      241 tttcgccgaa gcccggcggt cgctacaatg tgagtttcgc cacatcgccc ggcggcgccg
      301 cagggagcag cccgcacgac tttaaccgct cggccatgaa cacacgcact ttgttcggcg
      361 gcggcggcgg aggaggagga gttcaaggaa atggaggcca caacgtttcc ctcaaccagt
      421 cgggcgccca tggccaccac catcaccacc accaggcggg accgcccacc cagggactct
      481 tcgattcgct gcgcgaacag gccgccactc cgcagcagcg cagtcaactg agcctgctga
      541 atcagagcta ccaaaccaac gattccttcg ctcccggggc accgaatgcc attaatgcct
      601 caatgagggc tttgtgctct cctctgggag ccattgcctc gccaggagtt ataggaacac
      661 cagttagcaa tggaaacggc aactcccgcc tggccgactt ttgggtcacc atctttggct
      721 tctcgccggg agccagctcc atggtgctgc agcacttcac gctctgcggc accattgtgg
      781 acgtggtgca tgccccgcag aacggcaact ggatgcatgt gcgcttctcc tcgcgcatcg
      841 aaagcgacaa ggctctgaac tacaatcaca agatcatcgc cggcaatgta atggtgggcg
      901 tggcccgctg caccgaacgt tcggtgctgg acaaggagaa cagcagcggt ttggccaatg
      961 cagaggccac agtagctagc aatcagccca ccagtcccat tcgtcccttt gcccagcagt
     1021 cgtacaagct ggcacggaat gagaatacca tttcgccgtc gaaggatgtg ccgcagaaga
     1081 gctccgggct gatggacaag gccatggact tgatattcgg ctggtgagac aggaggaggg
     1141 ctggcttttc cggctactta tttaataatt cactgcgtac atccagcata catacataca
     1201 tacttattaa aagagataca atagcaa