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LOCUS XM_017159717 6121 bp mRNA linear INV 09-DEC-2024 variant X3, mRNA. ACCESSION XM_017159717 VERSION XM_017159717.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017159717.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6121 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6121 /gene="sno" /note="strawberry notch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108069586" CDS 562..5547 /gene="sno" /codon_start=1 /product="protein strawberry notch isoform X3" /protein_id="XP_017015206.2" /db_xref="GeneID:108069586" /translation="MTSKKRKTLLDADDDDDNFEEDDSGSDFDDDEDPDQIEVPGGGR DLNTAVTYAQNIRSGVGVATKGGTPIPIPTGAKIVISNNNIKPISLLRINNNNNNNNN IITSVNSTTNSNGSNNNNTAVRQIITTTATKPTIVGGTSTVGGVALGGKITAIPIIPR KVAIENNLNNMPKKLNNAITAMGSPAARSSGNAGMTGGGSSAAGAAGSTSSYLNSLST NELMNLAAYVAAKGSSAPPPPPPSTAANSVRSSPPGGHFFGGGAAASTSASAANFNMA ASLLAQMSYAGGVQPIRAFKMAGNAGGGIVGNNQKPPMATTAGSGGGAAGGASAAGGG VKGNNSMMEAVQKLIAMNPEYLTSGIPNNVFQLFMQSMQQQRPQAPPAPMQPVVTSAA AAAAAAAAAAHASAAAYVQQEEDEVDYEEMGVAETYADYWPAKLKLGKKHPDAVVETA SLSSVEPCDVYYKLSLPHETINSGHLSALQLESITYASQAHDHLLPDGSRAGFLIGDG AGVGKGRTIAGIIYENYLKGRKKALWISVSNDLKYDAERDLSDIGATRIDVHALNKFK YAKISSDVNNNCKRGVIFSTYSALIGESNNKTGKYRSRFRQLLQWCGEDFEGLIIFDE CHKAKNLCPVGSGKPTKTGQTVLELQNKLPKARVVYASATGASEPKNMAYMVRLGLWG QGTAFGNFNDFITAVERRGVGAMEIVAMDMKLRGMYIARQLSFKGVSFKIEEVPLSKE FRKIYDQSVELWVEAMQKFTEAAELIDAESRMKKTMWGQFWSSHQRFFKYLCIAAKVN HAVLVARESIKYGKCVVIGLQSTGEARTLDQLEKDDGELTDFVSTAKGVFQSFVERHF PAPDRNRINRILGLYDETPSLADSTSSLGNNSQSTTAAGKRKGSSNNNDNGSSAGGKS KKKKRSGSWQYSDSDDDDEGSKRNRNRNSDSDEANSDDDDLRSDMDDEDEDDEDQDVD SDRRSVASDASSDFNPFFSGSDSDIDPWVNARSKKSTKKTQKKTKKKVKKEKEKGKKE LASSSSASSSTANDPSGSTTMSATVVAALNAAKNRKAQLSTQDKIQDLLQKKQELKGT VTPVGVNGVKLNYGPPPKDAIERACTMKEELLRKIERLGSRLPPNTLDQLIDELGGPD NVAEMTGRRGRVVQTDDGNIQYESRTESDVPLETLNITEKQRFMDGQKDVAIISEAAS SGISLQSDRRVFNQRRRVHITLELPWSADRAIQQFGRTHRSNQVNAPEYIFLISDLAG ERRFASTVAKRLESLGALTHGDRRATETRDLSQFNIDNKYGRQALETVMRTIMGYESP LVPPPTDYSGEFFKDIAGALVGVGIIVNSESHPGVLSLDKDYNNISKFLNRILGCPVD LQNRLFKYFTDTMTAIIQQAKRGGRFDLGIVDLGAAGENVTRCRLIRFVRKHATGVAP TEMHTVRVERGMIWQEAIDKYADLFNENEGFYLSHQLRNQKRTAIMVVILEHQPARNS SSTSSTTTDSDGGKKKKSRSKKEIMCQIYRPNTGLQVRHESLFELEKKYRKVGSEEAE PHWTEQYDASVNTCSHAYWNGNCRNVSLGNDCEVGLRQRLYHVLAGSVLSVWGRVEHI LNTRSNSKMQVIRMKTTGDEKIVGTLIPKSCFEPLVADLRSDSEKQEEFNY" misc_feature 1891..2799 /gene="sno" /note="P-loop containing NTP hydrolase pore-1; Region: AAA_34; pfam13872" /db_xref="CDD:464010" misc_feature 3958..4791 /gene="sno" /note="C-terminal domain on Strawberry notch homolog; Region: Helicase_C_4; pfam13871" /db_xref="CDD:464009" polyA_site 6121 /gene="sno" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgaaagcaac atttccatct ggcaacactg tgttacgtgt gcgtgtgttt tcggcttcct 61 cgcttccttc tcgttctcgt ttccttcctc cttgattccg attccgagtg ttgttgcatt 121 ttgcatcgag tgcagtgatt gtgcgttgca gcaacatcca aaatatccaa agaggcgaga 181 cttcaaagcg aatacaccgc gtgcagcaac acacgcacac acacatgcac acacggccat 241 tatcgcaaag gcagcagcag cagcaacaac aacaacggca gctctaacgc gttgaaaaca 301 cttattgcgg agtatttttt tttttcgctg catttgctga ctggctggcc gcacaatcgt 361 tctgttttcg ctgacggctc gaaaaaagga gaattctttc tcgaaaataa ggaaaaaaca 421 acagcggcag caacgacaaa acaaacaaaa gggcgaaaaa cgcgtgtgtg cttatttttt 481 gtggttaacg gttaacaaca gccagaattg gagtgacaaa cgaaaacaac aacaagaaca 541 gttagcaatt ggagcttcga aatgacgtcg aaaaaaagaa aaaccctgtt ggacgccgat 601 gacgacgatg ataatttcga agaggacgat tcgggctccg atttcgacga tgacgaggat 661 ccagatcaaa tagaagtgcc cggaggtggt cgcgatctga ataccgccgt tacctacgcc 721 caaaatatcc gcagcggagt gggcgtggct accaagggcg gtacacccat tcccataccc 781 acaggcgcca aaattgttat aagcaataac aatatcaagc caatttcgtt gttgcgcatc 841 aacaacaata ataacaataa caacaatata attaccagcg ttaatagtac aacaaacagc 901 aacggcagca acaacaacaa cacagccgtg cgtcagataa tcacaacaac agcaacaaaa 961 ccaaccatag tgggcggcac gtcaacggtt ggaggcgtgg cactgggcgg aaagatcaca 1021 gcgataccga taatacccag aaaagtagcg atagagaata atttaaacaa tatgccaaag 1081 aaactgaata acgcaataac ggccatgggc agtccagcgg ccaggagcag cggcaatgcc 1141 gggatgactg gtggtgggtc gtccgctgct ggcgccgctg ggtccaccag cagctatttg 1201 aacagcctca gcaccaacga actgatgaac ctggccgcct acgtggccgc caagggtagc 1261 agcgccccgc cgcctccgcc gccgtccacg gccgccaatt cggtgaggag ctcgcccccc 1321 ggtggccact tctttggcgg aggagcggcg gcctccactt cagcctctgc tgctaatttc 1381 aatatggccg cgtctttatt ggcgcagatg agttatgcgg gcggagttca gcccattcgc 1441 gccttcaaga tggccggaaa tgcaggagga ggaatcgttg gcaacaatca gaagcctccg 1501 atggccacga ccgcaggaag cggaggagga gcagcaggag gagcaagtgc agccggaggc 1561 ggagtgaagg gcaacaactc gatgatggag gccgtccaga agctgatcgc catgaatccc 1621 gaatacctga ccagcggcat accgaacaat gtattccagc tgttcatgca gtcgatgcag 1681 cagcagcgtc cccaggcgcc acctgctccc atgcagccgg tggtcaccag cgcagcagca 1741 gcagcggcgg cagcggcagc ggcggcccac gcttcggcgg cagcctatgt gcagcaggag 1801 gaggacgagg tggactacga ggagatggga gtggccgaga cctatgcgga ttactggcca 1861 gccaagttga aactgggcaa gaagcacccg gatgccgtcg tggagaccgc ctccctgagc 1921 tccgtggagc cctgcgacgt ctactacaag ctgtcgctgc cccacgagac gataaacagc 1981 ggccacctga gcgccctgca gctggagtcc atcacctacg cctcgcaggc gcacgatcac 2041 ctgctgccgg acggcagtcg ggcgggcttc ctcatcggcg acggagccgg cgtgggcaag 2101 ggccgcacca ttgccgggat catctacgag aactacctga aggggcgcaa gaaggcgctg 2161 tggatatcgg tgtccaatga tctcaagtac gatgccgagc gggatctcag cgatatcggg 2221 gccacgcgca tcgatgtgca tgccctgaac aagttcaagt acgccaagat cagctccgac 2281 gtgaacaaca actgcaagcg gggcgtgatc ttcagcacat attccgccct gatcggcgag 2341 tcgaacaaca agacgggcaa gtaccgatcc cgcttccggc agctgctgca gtggtgcggc 2401 gaggacttcg agggcctgat catcttcgac gagtgccaca aggccaagaa cctgtgtccc 2461 gtgggctccg gcaagcctac gaagacgggc cagacggtcc tcgagctgca gaacaagctg 2521 cccaaggcgc gcgtggtcta tgcctcggcg acgggcgcct cggagcccaa gaatatggcc 2581 tatatggtgc gactgggcct ctggggacag ggcacggcct ttggcaactt caacgacttc 2641 atcaccgccg tagagagacg cggcgtgggc gccatggaga tcgtggccat ggacatgaag 2701 ctgcgcggca tgtacatcgc ccgccagctg agcttcaagg gcgtcagctt caagatcgag 2761 gaggtgccgc tgtccaagga gttccgcaag atctacgacc agtcggtgga gctctgggtg 2821 gaggccatgc agaagttcac cgaggcggcc gagctgatcg atgccgagag ccgcatgaag 2881 aagacgatgt ggggccagtt ctggtcgtcg caccagcgct tcttcaagta cctctgcata 2941 gcggccaagg tcaatcacgc ggtgctggtg gcccgcgagt ccatcaagta cggcaagtgc 3001 gtggtcatcg gtctgcagtc gacgggcgag gcgcgcacgc tggatcagct ggagaaggac 3061 gatggcgagc tgacggactt tgtttccaca gcaaaaggcg tcttccagtc gttcgtggag 3121 cgccactttc cggcgcccga tcgcaatcgc atcaatcgca ttcttggcct ctacgacgag 3181 acgccctccc tggccgattc cacctccagt ctgggaaaca atagccagag cacaacggcg 3241 gcgggcaagc ggaagggcag cagcaacaac aatgacaacg gctcctcggc gggcggcaag 3301 agcaagaaaa agaagcgcag cggatcctgg cagtacagcg acagcgacga cgacgacgag 3361 ggcagcaagc ggaatcggaa tcgaaacagc gacagcgacg aggcaaacag cgatgatgat 3421 gacctgcgca gtgatatgga cgacgaggac gaggacgatg aggatcagga cgtggacagc 3481 gatcggcgga gcgtggccag cgatgccagt tccgatttca atcccttctt cagcggcagc 3541 gacagcgaca ttgatccctg ggtgaatgcg cgcagcaaga agtccaccaa gaagacgcag 3601 aagaagacca agaagaaggt gaagaaggag aaggagaagg gcaagaagga gctggccagc 3661 agctcgtcgg cctcctcctc gactgccaac gatccgagtg gcagtacgac gatgtcggcc 3721 accgtggtgg ccgctctgaa tgcggctaag aaccgcaagg cgcagctgtc gacgcaggac 3781 aagatccagg atctgctgca gaagaagcag gagctcaagg gcacggtgac gccggtgggc 3841 gtgaacgggg tcaagctgaa ctacgggccg ccgcccaagg atgccatcga gcgggcctgc 3901 acgatgaagg aggagctgct gcgaaagatt gagcgtctgg gctcccggct gccgccgaac 3961 accttggacc agctgatcga cgagctgggc ggaccggaca acgtggccga gatgacgggc 4021 cgaaggggtc gcgtggtgca gaccgacgat ggaaacatcc agtacgagtc gcgaaccgag 4081 tcggatgtgc cgctggaaac gctgaatatc acggagaagc agcgcttcat ggacggccag 4141 aaggacgtgg ccattatctc ggaggcggcg tccagcggca tttcgctgca gagcgatcgg 4201 cgggtcttca accagcggcg gcgcgtccac atcaccctgg agctgccctg gtccgccgac 4261 agggccatcc agcagtttgg acgcacccat cgctccaatc aggtgaatgc acccgagtac 4321 atcttcctca tctcggatct ggctggcgaa cggcgcttcg cctccacggt ggccaagcgc 4381 ctggagtcgc tgggcgccct cacccacggc gatcgccggg ccaccgagac gcgcgatctc 4441 tcccagttca acattgacaa caagtacggc cggcaagctc tcgagacggt gatgcgcacc 4501 atcatgggct acgagtcgcc gctggtgccg ccgcccacgg actacagcgg cgagttcttc 4561 aaggacatcg ctggagctct ggtcggcgtg ggcataatcg tgaacagcga gagccatccg 4621 ggcgtgctca gtctggacaa ggactacaac aacatatcaa agtttctcaa tcgcattctc 4681 ggttgtccgg tggatttgca gaatcgcctg tttaagtact tcaccgacac catgacggcc 4741 atcatccagc aggcgaagcg cggcggtcgc ttcgatctgg gcatagtgga tcttggcgct 4801 gccggcgaga atgtgacccg ctgccggctc attcggttcg tgcgcaaaca tgccaccggc 4861 gtggcgccca cagagatgca cacggttcgc gtggagcgcg gcatgatctg gcaggaggcc 4921 attgataaat acgccgatct gttcaacgag aacgagggct tctacctgtc ccaccagctg 4981 cgcaaccaga agcgaaccgc cattatggtg gtgatcctgg agcaccagcc agcgcgcaac 5041 agcagctcga cgagcagcac caccaccgat tccgatggcg gcaagaagaa gaagtcgcgc 5101 agcaaaaagg agatcatgtg ccagatctac aggccaaaca ccggtcttca ggtgcgccac 5161 gagtcgctgt tcgagctgga gaagaagtac cgcaaggtgg gcagcgagga ggcggagccc 5221 cactggacgg agcagtacga tgcgtcggtg aacacctgtt cgcacgccta ctggaacggc 5281 aactgccgga atgtcagcct gggcaacgat tgtgaggtcg gcttgaggca gcgcctgtac 5341 catgtgctgg ccggctccgt gctctccgtg tggggacgcg tcgagcacat actgaataca 5401 cgttccaata gcaagatgca agtgatacgc atgaagacaa ccggggacga gaagatcgtg 5461 ggcactctga tacccaagtc ctgcttcgag ccgttggtgg ccgacctgcg cagcgactcg 5521 gagaagcagg aggagttcaa ctactgagtt ggagtggcag ttgtgtgatt tagttatggc 5581 ttatggctac acccttgaga ccgcaatcca ataccccttc cgcatcttcc aaacttctca 5641 accgaggcca agcaatattt gaatccacag cggatggtag gagggtagga tgctaggatg 5701 ctaggatggt agggagcacg ataggcttta acataatata tttaaatata ttataatata 5761 aatataaata ctacgatata gataaaccta acttaaatac atagcgtatg tgtagaagga 5821 cgtgaagtag tagggctccc ggacagcagc aacacaattt tttttgcctt aattttaaat 5881 agacttaacc atgtaccacc accccatcca tgatataaat cagactttgg ctcgtcatag 5941 ctcataaaga accacactca cataccgaca taacgacacc cgcgcaacgg aaatacgatg 6001 atatatagag aacgaaatga aaaacgctta taaatggact tttctcaatg atttaaagat 6061 taattttagt tacgccctaa gttacacaca cacacaataa accgccacat tttgtaaact 6121 a