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LOCUS XM_017159711 6408 bp mRNA linear INV 09-DEC-2024 transcript variant X5, mRNA. ACCESSION XM_017159711 VERSION XM_017159711.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017159711.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6408 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6408 /gene="HDAC4" /note="histone deacetylase 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108069580" CDS 629..4249 /gene="HDAC4" /codon_start=1 /product="histone deacetylase 4 isoform X5" /protein_id="XP_017015200.2" /db_xref="GeneID:108069580" /translation="MELEHKLQLEHKYQFAVNSHGAFQELRTESMVTAAAAAAAVAEE QHRQQQQQQHQHQQHQQHQQQQQQHQQQQQHQQQQQQQQGRGRDGMKLNKTCSANASP EVKQILNCFIMSRKSQAAQSNGTTTSPYRNRGVVKSSSGESLPAGTVTSAHPYKIPQP PSSLLKYESDFPLRKTASEPNLLKIRLKQSVIERKARIGGPVGARRHERLLQAAQRRQ QKNSVLTNCNSTPDSGPNSPPSAAALSVGVVGSRGSPTSAPIQEENEEGSQYQPGQRS SINDLPLFSSPSLPNISLGRPHLPNSAHSQHAQVAAQAQAQVAAQAAQAAQAQAHAMF AALHQHVAAAGGQPGGYYNPLSMAAFVGRQPAPMSMIPATGIAPQQPSPVVRSASATS TSSSQASLVGDVAPPQAHAASTILPSSSSYMQQMGSGVNIHAISAVAAAAAAAAAAAG SLPPTNSHGAQHGHSNHHGLAHGHGPHALYGGHGHQHNVPITDAQVAQVHLHKQGHRP LGRTQSAPLPLGHPMLTGAAQLNVVQTHYENSEAERQAYEHQVLNQKLRQTVLTRSGA AAAAAAAAGVGVSVGVVREAQLKEEDDDSAAEVMDLTDKKKPPKTVLTSTIATSTSQN LPEALAAAVAAAAYRGAPPSTSSSAAAATTAANKIAGGGIKLRDQEYLQQQREQLLLL QQEEELAKGLMRPLSRTLSSPLVPLGPHGLSQIPDTGQQPAPIATSSSADHIPPVNLS LPHRQHRQLMSTLYASQLRNHQQLHQPPSSGSPPHKVTTGLAYDPLMLKHSCICGDNA QHPEHSGRLQSVWARLNETDLVKRCDRLRARKATQEELQTVHTEAHAMLFGSNQCQLS RPKLENTLSASFVRLSCGGLGVDLDTTWNEHHTATAARMAAGCVIDLALKTAKGDLRN GFAVVRPPGHHAEANLAMGFCFFNSIAIAAKLLRQRMPEVRRILIVDWDVHHGNGTQQ AFYQSPDILYLSIHRHDDGNFFPGTGGPTECGSGAGLGFNVNISWSGALNPPLGDAEY IAAFRTVVMPIARSFNPDIVLVSSGFDAATGHPAPLGGYHVSPACFGFMTRELLQLAN GKVVLALEGGYDLAAICDSAQECVRALLGDPAAPIAQAELERPPCQNAINTLQKTIAI QQTHWPCVRMLEHTVGLSALETLKVEHDESETINAMAGLSMHRTLSRDDSEEPMDQDE TK" misc_feature <2000..>2092 /gene="HDAC4" /note="CDF family Co(II)/Ni(II) efflux transporter DmeF; Region: CDF_efflux_DmeF; NF033827" /db_xref="CDD:468196" misc_feature 2957..4081 /gene="HDAC4" /note="Histone deacetylases, class IIa; Region: HDAC_classIIa; cd11681" /db_xref="CDD:212544" misc_feature order(3398..3403,3425..3430,3515..3517,3521..3523, 3797..3799,3917..3919) /gene="HDAC4" /note="active site" /db_xref="CDD:212544" polyA_site 6408 /gene="HDAC4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agtaatgatg tcgttgacgg ttctcaatcg aagaagccaa acgcccattt gtctacccaa 61 gttttctctc tctgtcgccc tctgtctcct cctttcttct ttctcctttc tcccttgctc 121 accgctcttc cgcttggtgc tcttctagcg ctctttctct gccatccatt cccatcgtaa 181 cagtttcgaa atttgtgttt atatttgatt ttttcgccag ttgggccagt cggccgagtg 241 aaactgaaat gaaagcgcct ccctcatttc ccagcgaatg cggaggccaa agcgaacgcg 301 ccaaacacca aaatacaaaa taaaaaaata cataaaaata agaggaaaaa ctaaacatca 361 aaaaaactaa aaaccaaaac atcattcaac gtaatccaaa cacgctgttt ttcgaaagaa 421 aaaaaatcta tgaaaaagtg gccaaaagtt tataatcaaa tatcgaaagc aaacagacaa 481 aaaactacac cgagaaaaca aagaaatata agaataagaa acaaaagtgg ccgcagaaac 541 caaagattat ttattgagtg aactcaagaa gagccaggaa ttgcagaagc agcggctttt 601 ccacacgttt caggagcaat cgaagcaaat ggaattggag cataaactcc aactggagca 661 caagtatcaa tttgcggtga attcacatgg cgctttccag gaattgcgaa ccgagagcat 721 ggtgacagcc gccgccgcag cagcagcggt ggctgaggag cagcatcgcc agcagcagca 781 gcagcaacat cagcatcagc agcaccagca acatcagcag cagcaacagc aacatcaaca 841 gcagcagcaa caccaacagc agcaacagca gcagcaggga cgcggcaggg acggcatgaa 901 actcaacaag acctgtagcg ccaatgccag tcccgaggtc aaacagattc tgaactgctt 961 catcatgagc agaaagtcgc aggcggcgca gtcaaatggc acgacaacgt cgccctacag 1021 gaatcgcggc gtggtgaaga gctcctcggg cgaatccctc ccagctggaa ccgtgaccag 1081 tgcgcatccg tacaaaatac ctcagccgcc ctcctcactg ctcaaatatg aatctgattt 1141 tccgctgagg aagacagcat ccgaaccgaa cctgctgaag atccggctga agcagagcgt 1201 catcgagcgc aaggcccgaa tcggtggacc ggtgggagcc cggcgccacg aacgcctcct 1261 ccaggcggcg cagcgcaggc agcaaaagaa ctccgttctc acaaactgca acagtacacc 1321 ggactcggga cccaattccc cgccctcggc ggccgccctg tcggtgggcg tggtcggtag 1381 ccgcggatcg ccgaccagtg cgcccatcca ggaggagaac gaggagggca gccagtacca 1441 gccgggccag cggagcagca tcaacgattt gccgctgttc agctcgccat cgctgccgaa 1501 tatttcgctg gggcgaccgc atttacccaa ctcggcgcat tcacaacacg cccaggtggc 1561 tgcccaggcg caggcccagg tggccgccca ggctgctcag gcggcccagg ctcaggccca 1621 tgccatgttc gccgcactgc atcagcatgt ggccgccgcc ggtggccaac cgggtggcta 1681 ctacaatccg ctgagcatgg cggcctttgt gggccgtcag ccggcaccga tgtccatgat 1741 cccggccacc gggattgcgc cccagcagcc gtcgccggtg gtgcgcagtg cgtcggccac 1801 ctcgacctcc tcgtcgcagg cctcgctggt gggcgatgtg gcgccaccgc aggcccatgc 1861 cgcctccacc attctgccct cgtcctcgtc ctacatgcag caaatgggtt cgggcgtcaa 1921 tatccatgcc atctccgccg tggcagcagc ggcggcagca gcagccgcag ccgccggatc 1981 gctaccgccg accaatagcc atggtgcaca gcatgggcac agcaatcatc atggtctggc 2041 ccatggccac gggccgcacg ctctgtacgg aggccatggt caccagcaca atgtgcccat 2101 cacggatgcc caggtggcgc aggtgcatct gcacaagcag ggccaccggc cgctgggacg 2161 gacgcagtcg gctcccctgc ccctgggcca tccgatgctc acgggcgccg cccagctgaa 2221 tgtggtccag acgcactacg agaacagcga ggcggagcgg caggcctacg agcaccaggt 2281 gctgaaccag aagctccgcc agaccgtcct cacccgcagc ggagcagccg ccgccgccgc 2341 cgcagccgct ggcgtgggtg tgagtgtggg tgtggtccgc gaggcgcagc tgaaggagga 2401 ggacgacgac tccgcggccg aggtgatgga cctcaccgac aagaagaagc cgccgaagac 2461 ggtgctgacc agcacgatag ccaccagcac gtcgcagaat ctgcccgaag ccttggccgc 2521 ggcggtggca gcggccgcct accgcggtgc cccgccctcc acgtccagca gcgcggcggc 2581 ggcgacgacg gcagccaaca agatagccgg cggcggcatc aagttgcgcg atcaggagta 2641 tctgcagcag cagcgggagc agctgttgct cctccagcag gaggaggagc tggccaaggg 2701 cctgatgcga ccgctttcgc gaacgctcag cagtccgctg gtgccgctgg ggccgcacgg 2761 tctcagccag attccggaca ccgggcagca gccggcgccg atagccacct catcgtcggc 2821 cgatcatata ccgcccgtga acctctcgct gccgcatcgc cagcaccgcc agctgatgag 2881 caccctgtat gccagccagt tgcgcaatca ccagcagctt catcagcctc cttctagtgg 2941 ctcgcctccc cacaaggtca ccaccggcct ggcctacgat ccgctgatgc tgaagcactc 3001 gtgcatttgc ggcgacaatg cccagcatcc ggagcacagc ggtcggctgc agagcgtctg 3061 ggcgcgcctg aatgagaccg atctggtgaa gcgctgcgat cgactgcgcg cccgcaaggc 3121 gacgcaggag gagctgcaga cggtgcacac ggaggcgcat gcgatgctct tcgggtccaa 3181 tcagtgccag ttgagcaggc ccaagctgga aaacacactc tcggcgagct ttgtgcgcct 3241 ctcgtgcggc ggattgggtg tggatctgga taccacgtgg aatgaacacc atacggccac 3301 cgctgcccgc atggccgcag gatgtgtgat cgatttggct ctcaaaacgg ccaaggggga 3361 tctgcggaac ggcttcgccg tcgtccggcc gccgggacat catgccgagg ccaatctggc 3421 catgggcttt tgtttcttca actcgatcgc cattgcggcc aagctgctgc gccagcggat 3481 gcccgaggtg cggcgcatcc tcatcgtcga ttgggatgtg catcatggca atggcacaca 3541 gcaagcattc taccaaagtc ccgacattct atatctttcc atacatcgac acgatgacgg 3601 taacttcttt cccggcacag gcggacccac agagtgcggc tccggtgccg gtctcggctt 3661 caacgtgaac atctcatggt ccggggcact caatccgccg ctgggcgacg ccgagtatat 3721 cgctgcattc cgtaccgttg tgatgcccat cgcgcggagc ttcaatccgg acattgtgct 3781 ggtctcctcg ggctttgatg cggccaccgg tcatccggca ccgctgggcg gctaccatgt 3841 ctcgcccgcg tgcttcggct tcatgacccg cgaactcctc cagctggcca acggcaaggt 3901 ggtgctggcc ctcgagggcg gctacgatct ggccgccatc tgtgattccg cccaggagtg 3961 cgtgcgtgcg ctgctcggcg atccggccgc tccgatagcc caggccgagc tggagcgacc 4021 gccctgccag aatgcgatca atacgctgca gaagacgata gccattcagc aaacgcattg 4081 gccctgcgtc aggatgctgg agcacacggt gggtctgtcc gcgctggaaa cgctcaaggt 4141 ggagcacgac gagtccgaga cgatcaatgc catggccggc ctttccatgc acagaactct 4201 atcccgcgat gattccgagg agccgatgga tcaggatgaa accaaatagg cggcgatgct 4261 ggctaggatt tgtgggcgtg gcacgcggga atggcgagag ggcgtggccg caagctgctc 4321 aatgcacatt tagttatttg ttgtagttga attgattgtt gttgctgttg ttgttgtggc 4381 gctcgcttgc aattgttgtc gttgtcattg atcgtctata gccacatcta tctctctctc 4441 gatcgatcgt taatattata atcccctcca aaactgagaa acatcgaaaa tagagcgggg 4501 aaagtgtcta aaagaagcag aacagggcct aaagttcaaa atggtggctg tgcctccaaa 4561 aaaagaaata attataataa ttagaaagaa gaatccttag agaaactggg gtgttttttt 4621 atgcaaatat ataagtagaa tatattgtga gaatttagtt gtagaattcc ttgggaggat 4681 cttttttttt tgtttttttt ctaggtgaga gaagaggtgt tttaacgcac acaaaccaac 4741 aaacacacgc aactcaatgt atcttattat tattattaat attatttaag tatgtgtgtt 4801 gaaaggatat agaagcacta acctaatggt aaatcagtaa actataaagt taaagttaaa 4861 aggagatcag gtgcgagaag cgcgtgtttt tattttaggt aaggttcaac ctcagagttc 4921 ccgaaataca tttaagcccc accaccacca cgcccactta tcccgccagc ccccaaaaac 4981 gaagatcgag cgagagagag gatttcgtgt tatgtagaat gctttagttg atataataag 5041 aggatatgag aaaacttaac agctaacaag ttgagggaaa ggcgaaaaac tgagaaatct 5101 ttttgtacaa tttatagttt agtgcaagtt tcaagtacaa catactatta tttaaagaat 5161 tctatatata tttaaatata tattgtgcaa taaatgtgag aaaatgaaaa tcgagtgcag 5221 agcaaaaaca aaacaaaaca aaagaaaacc acacaaaaac agaaacagaa actaaaacga 5281 ataagagaga attgttgtta aatgttgccg agatcttata tacgtatgta tacctaataa 5341 ctgttacaat aataaccctt tatatatata aaaaacaaat gaagtatata tatatttaaa 5401 tgcacatgtg tattcaccgt gtgtgtaacg ataacgatgt tcaacaaatg tctgaaatga 5461 agtaaaacta ttattatatg taaataaaac acaaaacaaa gtgaacaatt ttaataaaaa 5521 aaaaccaaat ccgaaaacat tcacgctcac acacacacac acacttacgt cctgggcagg 5581 acccgaaggc gtgaatcggg aaaattctgg aatacccgtt taaccgctaa ccgttaactg 5641 taaaaccgct gtaattgtat tcgtactcgt gtacctttag ctgtctatag ccgtctctct 5701 ctaactcgct acctaacagt aaaggagcaa ctcaaaaaac ggaagaagga gcaacagaca 5761 aggatcaaaa gaattagcag gagaagagaa acaaggagga gaataagcac aacgagaaat 5821 ggaccgattg gctccaactg gatgaaacaa ttgttaacaa atcgaaacag aaactaaaaa 5881 ctgaacttaa aaaattaaat cgcaaatgta actattaatc taagcgaagg agaagccgtt 5941 gtcagttttt tttgggtttt tatttttaaa cgcagagaaa acgcaacata aaaatctaaa 6001 aattttagaa gattttctgc gtttaatctc tgatttttcc ttggttttat ttccggttct 6061 cccattttaa attccgaacc ccgccatccc atttacctct cctgctaatt gagcgttttt 6121 gaaaaacctt ttgagctgat aaaaagaaac attaaaactt aaattattct aactaaataa 6181 aatattgttg ttgcgcactg caaaaaaaaa actaaaaaca aaaataattc cataagctga 6241 gaaatagtta aaagtggttt ttagcaaaag gaaaaccaaa tcaaatattt atattttgtt 6301 tattgttgca caaataagtc caaggaacag aaaccatgaa acaattaaga gtaatattgt 6361 gtgtcgcttt ttctaaacga aataaatcga agaaatcgtc aagagtaa