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LOCUS XM_017158343 1960 bp mRNA linear INV 09-DEC-2024 6 (CCT6), mRNA. ACCESSION XM_017158343 VERSION XM_017158343.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017158343.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1960 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1960 /gene="CCT6" /note="chaperonin containing TCP1 subunit 6; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108068651" CDS 124..1725 /gene="CCT6" /codon_start=1 /product="T-complex protein 1 subunit zeta" /protein_id="XP_017013832.1" /db_xref="GeneID:108068651" /translation="MASISLLNPKAEFARAAQALAINISAAKGLQDVMRTNLGPKGTV KMLVSGAGDIKITKDGNVLLHEMQIQHPTASMIARASTAQDDSTGDGTTTTVMLIGEL LKQADIYLSEGLHPRIMTEGFEKARDKALEVLDQVKVPVEINKKSLVEVANTSLKTKV HPALADLLTDVCVDAVLTIASADKSKPVDLHMVELMEMQHKTDTDTQLVRGLVMDHGA RHPDMPKRLENAYILTANVSLEYEKAEVNSGFFYKTAEEREAFVRAERDFIDQRVKKV IELKRSVCDGTDKSFVLINQKGIDPISLDALAKEGILALRRAKRRNMERLALACGGTA MNSFDDLQEEHLGYAGVVYEHVLGENKYTFVEDCKNPLSVTILIKGPNKHTITQIKDA IRDGLRAINNTIADKALVPGAGAFEVRAYNELVAFKETIKGKSRLAVQAFADALLVIP KTLAVNSGYDAQDTIVKLTVEDRLSPELVGLDLATGEPMKPVDLGVYDNYIVKKQILN SCSIIASNLLLVDEVMRAGMTSLKG" misc_feature 142..1707 /gene="CCT6" /note="TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL)...; Region: TCP1_zeta; cd03342" /db_xref="CDD:239458" misc_feature order(154..156,166..168,250..261,265..267,319..321, 325..327,337..339,349..351,358..360,1270..1272,1678..1698) /gene="CCT6" /note="ring oligomerisation interface [polypeptide binding]; other site" /db_xref="CDD:239458" misc_feature order(235..243,391..393,403..405,583..585,1306..1308, 1360..1362,1480..1482,1609..1611,1615..1617) /gene="CCT6" /note="ATP/Mg binding site [chemical binding]; other site" /db_xref="CDD:239458" misc_feature order(1420..1422,1474..1476,1501..1503,1507..1512, 1519..1521) /gene="CCT6" /note="stacking interactions [active]" /db_xref="CDD:239458" polyA_site 1960 /gene="CCT6" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttcgctggt ccggcaactc ttgtcatctg attttcggct tttggctcag cgtgtttcgt 61 ttgtgccgat tttttgattt aattcgccca ataagtaata ccagtgttta accgagagac 121 gcgatggctt cgattagctt gttgaacccc aaggccgagt tcgcccgcgc cgcccaggcc 181 ctggccatca acatcagtgc ggccaagggc ctgcaggatg tgatgcgcac caatttggga 241 cccaagggca cagtgaagat gttggtctcc ggcgccggcg acatcaagat caccaaggac 301 ggcaacgtgc tgctccacga gatgcagatc cagcacccca ccgcctccat gatcgccagg 361 gccagcactg cccaggatga ctccactggc gacgggacca ccaccacggt gatgctcatc 421 ggcgagctgc tcaagcaggc ggacatctat ctgtccgagg gcctgcatcc gcgcatcatg 481 accgagggct tcgagaaggc ccgcgacaag gcgctggagg tgctcgacca ggtcaaggtg 541 cccgtggaga tcaacaagaa gagcctggtg gaggtggcca acacgagcct gaagaccaag 601 gtgcatcccg ccctggccga tctgctcacc gacgtttgcg tggacgccgt gctgaccatt 661 gccagtgcgg acaagtccaa gcccgtggat ctgcacatgg tggagctgat ggagatgcag 721 cacaagacgg acaccgatac gcagctggtg cgcggcctgg tcatggacca cggtgcccgc 781 catccggaca tgcccaagcg cctggagaac gcctacatcc tgacggccaa cgtgtcgctg 841 gagtacgaga aggccgaggt caactcgggc ttcttctaca agaccgccga ggagcgcgag 901 gcctttgtgc gcgccgagcg cgacttcatt gaccagcgcg tgaagaaggt catcgagctg 961 aagcgctctg tgtgcgatgg caccgacaag agcttcgtgc tgatcaacca gaagggcatc 1021 gaccccatct ccctggacgc tttggccaag gagggcattc tggccctgcg tcgcgccaag 1081 cggcgcaaca tggagcgttt ggccttggcc tgcggcggca cagccatgaa ctccttcgac 1141 gacctgcagg aggagcacct gggctacgcc ggcgtggtct acgagcatgt gctgggcgag 1201 aacaagtaca ccttcgtgga ggactgcaag aatccgctct cggtgacgat tctgattaag 1261 ggtcccaaca agcacacgat cacccagatc aaggacgcca ttcgggacgg tctaagggcc 1321 attaacaaca ccattgcgga caaggctctg gtgcccggag ctggggcctt tgaggtgcgc 1381 gcctacaacg agctggtcgc cttcaaggag accatcaagg gcaagtcccg cctggccgtg 1441 caggcctttg ccgatgccct gctggtcatc cccaagacgc tggccgtcaa cagcggctac 1501 gatgcccagg acaccatcgt caagctgacc gtcgaggatc gcctcagtcc cgaactggtc 1561 ggcctcgacc tcgccaccgg cgagcccatg aagcccgtcg atctgggcgt ctacgacaac 1621 tacatcgtca agaagcagat cctcaactcg tgctcgatca tcgccagcaa cctgctcctt 1681 gtcgacgagg tcatgcgtgc gggcatgacg agcctcaagg gttagacctt gtttcacccg 1741 attcattcgc tataaccaag ttaatgcacc cgcgtctcct aaaacaccac aactggaaga 1801 aacacactcg gaatagttgc ggctgcgagt attcacaaac aaatctaaaa tcatacacag 1861 ccctataatt atcgctaatg tattttctat ttttattgcc actaatgttt acttactaca 1921 aaccattggt ttaaaaataa aaactaaaat cgaaacttaa