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LOCUS XM_017158307 5879 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017158307 VERSION XM_017158307.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017158307.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5879 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5879 /gene="sog" /note="short gastrulation; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins" /db_xref="GeneID:108068627" CDS 1173..4259 /gene="sog" /codon_start=1 /product="dorsal-ventral patterning protein Sog" /protein_id="XP_017013796.2" /db_xref="GeneID:108068627" /translation="MANKQRKSSEWATATGTVPLLERYCNSNSSSEETEVETEAQIPR SIHRAPLIRHLRHLLIAGLLIVCLVGGTEGRRHAPLMFEESDTGRRSNRPAVTECQFG KVVRELGSTWYADLGPPFGVMYCIKCECVAIPKKRRIVARVQCRNIKNECPPAKCDDP ISLPGKCCKTCPGDRNDTDVALDVPVPSEEEERNMKHYAALLTGRTSYFLKGEEMKSM YTTYNPQNVVATARFLFHKKNLYYSFYTSARIGRPRAIQFVDDAGVILEEHQLETTLA GTLSVYQNATGKICGVWRRVPRDYKRILRDDRLHVVLLWGNKQQAELALAGKVAKYTA LQTELFSSLLEASPQSDPQLAGAGGTAIVSTSSGAASSMHLTLVFNGVFGAEEFADAA LSVRIELPERKELIFDEIPRVRKPSAEINVLELSSPISIQNLRLMSRGKLLLTVESKK HPHLRIQGHIVTRASCEIFQTLLAPHSAESSTKSSGLAWVYLNTDGSLAYNIETEHVN TRDRPNISLIEEQGKRKAKLEDLTPSFNFNQAVGSVEKLGPKVLESLYAGELGVNVAT EHEASLIRGRLVPRPVADARDSAEPILLKRVQEEDPHAVGMAWMSIDNECNLHYEVTL NGVPAQELQLYLEEKPIEAIGAPVTRKLLEEFNGSYLEGFFLSMPSAELIKLEMSVCY LEVHSKHSKQLLLRGKLKSTKVPGHCFPVYTDNNVPVPGDHNDNHLVNGETKCFHSGR FYNESEQWRSAQDSCQMCACLRGQSSCEVIKCPALRCKAATEQLLQREGECCPSCVPT QQSAVQSSPAVNASDLLQQRRGCRLGDQFHTAGASWHPFLPPNGFDTCTTCSCDPLTL EIRCPRLVCPPLQCSEKLAYRPDKKACCKICPEGKQSSSNGHKAAPNNPNVLQDQAMQ RSPSHSAEEVLANGGCKVVNKVYENGQEWHPILMSHGEQKCIKCRCKDSKVNCDRKRC SRSTCQQQTRVSSKRRLFEKPDAAAPAIDECCSTQCRRSRRHHKRQPHHQQQRSSS" misc_feature 1467..1685 /gene="sog" /note="von Willebrand factor type C domain; Region: VWC; pfam00093" /db_xref="CDD:278520" misc_feature 1761..2165 /gene="sog" /note="A domain in the BMP inhibitor chordin and in microbial proteins; Region: CHRD; smart00754" /db_xref="CDD:214804" misc_feature 2184..2555 /gene="sog" /note="A domain in the BMP inhibitor chordin and in microbial proteins; Region: CHRD; smart00754" /db_xref="CDD:214804" misc_feature 2571..2909 /gene="sog" /note="A domain in the BMP inhibitor chordin and in microbial proteins; Region: CHRD; smart00754" /db_xref="CDD:214804" misc_feature 2934..3269 /gene="sog" /note="A domain in the BMP inhibitor chordin and in microbial proteins; Region: CHRD; smart00754" /db_xref="CDD:214804" misc_feature 3375..3557 /gene="sog" /note="von Willebrand factor type C domain; Region: VWC; pfam00093" /db_xref="CDD:278520" misc_feature 3633..3833 /gene="sog" /note="von Willebrand factor type C domain; Region: VWC; pfam00093" /db_xref="CDD:278520" misc_feature 3960..4190 /gene="sog" /note="von Willebrand factor type C domain; Region: VWC; pfam00093" /db_xref="CDD:278520" polyA_site 5879 /gene="sog" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgcaagacta aaggtaaaac atgttgcgaa acttttgttt tgttccccaa caaagttcca 61 atgttttatt ttggcaatat cttttttttt taatttttgt aaaatataaa aaagagaggc 121 tgcagttgca gcgctgctcg cgctcattca actcgacttc aacttcaact tgcctcgttc 181 gtcatcgcca aagcatctct tcgacacgcg actcgcacgc acacacctgc agttgcgaaa 241 attgcagtga gaacgatcgt gtccgtgtgc gcgagagaga gggagtgaga gcggcagagg 301 gagagcaaac gagagaggga gagagagagc gcgctgcctg cgccgcagtc ggcgtcgcag 361 cgcgcgcagt tgttggcctg cttggtagtt tatttattca accgaccgat accgtgtgga 421 cattatttta ccaagcgttc gcaaccgcac aacacggaga ggagagccaa gagagccaag 481 aaacccagag agctacgatc cgatccgatc caaaatcaca ataccatcat atacacggcg 541 gttcgcaccg ccagctatct agtagataaa aagtcgccgc gacgagaacg cagaacgcag 601 aaccgatccg aaccgctaac ttgaacgcca gaaactcgcg ttgtcgtaat ccccatccga 661 gatcgactct attttccaga gcatatatac cgcaatagtg ccgaaactaa actgaacttt 721 acttagccac actataccat gcgatgatga attgaaatta cagtaaaata agagtaaaaa 781 gtaacaagta aaaaccaagt taagaaaaac aagtctcgaa actgaaaacg aaaaacgcaa 841 atttatgcag ccgctaaata aaaacaaaac aaaacacaag acagcgaatt aaaaacagca 901 aatagaataa atccaataga tcggcgcgcg aaactcgcgt gtgttatcta atctgcaaga 961 gaagtacaag aatcggtatc ggttctatac tatatctata tctatatatc tatatccatt 1021 gtgtgtgtgc cagtgtgtgc gttgcgacct ttgtttttat atattttttg ttgttgttca 1081 aactgtgaaa cgtgctttac aagccgggcg tttaaaatac atactaaata ctacaactac 1141 acaccacaaa ataacaaaat aaccatataa atatggccaa caagcagagg aaatcgagtg 1201 aatgggccac ggccaccggc acagtaccgc tcctggaaag gtattgcaac agcaacagca 1261 gcagcgaaga aacggaagtg gaaacggaag cccagatccc cagatccatc cacagagccc 1321 ccctgatccg ccacctgcgc cacctgctca tcgccggact gctgatcgtc tgtttggtgg 1381 gcggtacgga gggccggcgg catgcgccgc tcatgttcga ggagtccgac acgggcaggc 1441 ggtccaacag accagcggtc accgaatgtc agtttggcaa agtcgtgcgc gaattgggct 1501 cgacctggta tgcggatttg ggtccaccct tcggagtgat gtactgcatc aagtgtgaat 1561 gcgtggcgat acccaagaag cgccgcatcg ttgcacgcgt ccagtgtcgc aatattaaga 1621 acgagtgtcc accggccaaa tgcgatgatc ccatctcgct gcccggcaaa tgctgcaaga 1681 cctgtcccgg cgatcggaac gatacggatg tggccttgga tgtgccagtg cccagcgaag 1741 aggaagagcg caacatgaaa cattacgctg cgttgctcac gggccgcacc tcctatttcc 1801 tcaagggcga ggaaatgaag tccatgtaca ccacctacaa tccacagaat gtggtggcca 1861 ccgcccggtt tctgttccac aagaagaacc tctactactc gttctacacc tcggcgcgga 1921 tcggtcgtcc ccgggccatt cagttcgtcg acgatgccgg tgtcattctg gaggagcacc 1981 aactggaaac cacactggcc gggactttga gtgtctacca gaatgccacc ggcaagattt 2041 gcggcgtttg gcgtcgtgtg ccccgcgatt acaagcgcat cctgcgcgac gatcgcctcc 2101 atgtggtgct cctctggggc aacaagcagc aggccgagtt ggccctcgcc ggcaaggtgg 2161 ccaagtacac ggccctccag acggaactct ttagctcgct cctcgaggcg tcgccccagt 2221 cggatcccca gctggccgga gcaggcggca cggcgattgt gtccaccagc agcggtgccg 2281 cctcctcgat gcatctcacc ctggtcttta atggcgtctt tggcgcggag gagtttgcgg 2341 atgccgcgct gagtgtccgc atcgagttgc ccgaacgcaa ggagctgatc ttcgatgaga 2401 ttccccgcgt gcgcaaaccc tccgccgaga tcaatgtcct ggagctctcc tcgcccatct 2461 ccattcagaa tttgcgcctg atgtcgcgtg gcaagttgct gttgaccgtc gagtccaaga 2521 agcatcccca cctgcgcatc cagggacaca ttgtgacccg tgccagctgc gagatcttcc 2581 agaccctcct ggcgccgcac agcgccgaat cctcgaccaa gagcagcggc ctcgcctggg 2641 tctatctgaa caccgacggc tcgctggcct acaacatcga aacggagcac gtgaacaccc 2701 gcgatcggcc caacatcagt ttgatcgagg agcagggcaa gcgcaaggcc aagctggagg 2761 atctgacgcc cagcttcaac ttcaaccagg ccgtcggcag tgtggagaag ctggggccca 2821 aggttctcga gtcgctctac gccggcgagc tgggcgtcaa tgtggccacc gaacatgagg 2881 ctagtttaat ccgcggacgt ctagttcccc gtccagtggc cgatgcccgt gactccgctg 2941 agcctattct gctcaagcga gtgcaggagg aggatcccca tgccgtgggc atggcctgga 3001 tgtccatcga caacgagtgc aatttgcact acgaggtgac cctcaacggt gtgcccgccc 3061 aggaattgca actgtatctc gaggagaagc ccatcgaggc cattggagcg cctgtcacta 3121 ggaaactact cgaggagttc aacggctcgt atctggaggg cttcttcctc agcatgccgt 3181 cggcggagct gatcaagctg gagatgagcg tctgctatct ggaggtccac tcgaagcact 3241 ccaagcagct gcttctgcgc ggcaagctga agagcaccaa ggtgccgggt cactgcttcc 3301 ccgtctacac ggacaacaat gtcccggtgc cgggcgatca taacgacaat catctggtta 3361 atggcgagac caagtgcttc cactccggac gcttctacaa cgaatcggag cagtggcgca 3421 gtgcccagga ttcctgccag atgtgcgcct gcctgcgcgg tcagtccagt tgcgaggtca 3481 tcaagtgtcc tgccctccgt tgcaaggctg ccacggagca gctgctccag cgggagggtg 3541 aatgctgtcc cagttgtgtg cccacacagc agtcagccgt acaatcctcg ccggccgtga 3601 atgccagcga tttgctgcaa cagcgacgcg gctgccggct gggcgatcaa ttccacacgg 3661 ccggagccag ctggcatcca ttcctgccgc ccaacggctt cgacacctgc accacctgca 3721 gctgcgatcc gctgaccctc gagatccggt gcccccggct cgtctgcccg ccgctgcagt 3781 gcagcgagaa gctcgcctac cggccggaca agaaggcctg ctgcaagatc tgcccggagg 3841 gcaagcagag cagctccaac gggcacaagg cggcgccgaa caaccccaat gtgctgcagg 3901 accaggccat gcagcgatcg cccagccaca gtgccgagga ggtcctcgcc aacggcggct 3961 gcaaggtggt caacaaggtc tacgagaacg gccaggagtg gcaccccatc ctcatgtccc 4021 acggcgagca gaagtgcatc aagtgccgct gcaaggactc caaggtgaac tgcgaccgca 4081 agcgctgctc ccgctcgacg tgccagcaac agactcgtgt ctccagcaag cggcggctgt 4141 tcgagaagcc cgacgcagcg gctccggcca tcgacgagtg ctgctccacc cagtgccgcc 4201 ggtcgaggcg ccaccacaag cggcaaccgc accaccagca gcagcgctcc tccagttgag 4261 cggttgcggt tgtaggttgt aggatggccg ggggattccg agttcaatcc cgatctagat 4321 tcagttgcag aagcagaaac agagccacgg tagaaagttg agccactcac tcactcagtg 4381 cgatgtgcac caccacccaa ccactcacac acacactcac tcacactaac acacatcacc 4441 cacacaaacg agcctacata cacacacttg tgcaaggact tgcatagatc gttgttgtta 4501 tgtggcagca atgaaaactt gtattatata tttgaaaaca gaaaaacaaa aggaggagga 4561 ggaggagaga attctcaaaa aaaaaaaaat agagaaaagg agagggttag agagatgata 4621 atgagatcct tggaaaagga cattaaacca gtgcagtttg ctttaaattc tccagcgcag 4681 aattttcaac agaaagcatt ttctgaattt cttttcacaa cccgcccccc attgatttcc 4741 cccaccatcc caggcaccca aaaaaaaaca ttaaaattaa attttaattt attaaaaaaa 4801 gcaccataaa aatcacatta aaaaacacta ccaaaaacaa aaagaattcg aaattgaaac 4861 tgtactgagt tttgaaaaca cacacatttg acttattgaa atacttaaac cttttcaatt 4921 catttaaatt caaatttaaa ttgaaatttg aaagcaaatc gataacgcag cagctatcgt 4981 gggaatatta acttaaatct aattattctg attatacata tatacaatat tttttatata 5041 tacatatata tatttatata catatatata tctatataat ttatgagaaa caaaacacag 5101 tgggaaacgc atttggcgca ttatgtggtt atcgacattt gtatcgatat atctatttta 5161 gcaacccaaa agtttcaact gattgactga atggcaaaaa taaaattagc tttaaatatg 5221 tttttcgcaa gcaagaaaat gaaggaaatt gaaaacaccg cttttcaatg tgaaattatt 5281 ttttactaat tgttactcac accgacacac accacacgca cacatacatt taggaatcga 5341 caagcacaca catacacatt gaaatgtttg tattttttag gaatatattt ttaaattaaa 5401 atacatttta tggaactttt tcaataatta tgtacaaaat ttgttaaaaa aaaaagaaaa 5461 ctatttcaaa aaatgccatg tacacatatt tatacacaaa cacacacata ctcccataaa 5521 aagaacaaat cgaaaaaaga aacaaaaata aaatttagcg catacacaga cagaaattgt 5581 attaattttt tattctatta aattattctt attattatta ttttatgttt attattattg 5641 taatgatttt ttttgtagct tgtataaaca tttatatata tattctatat ttaataattg 5701 attgattaat tttaaataat tgatcaatgg cgagcaaaaa tatttaaatc gacgaagagc 5761 taaacaaact tgtactaata acttaaattt agtgtttata aattaaacaa aaattgaaaa 5821 tcaaaaacaa caacaaaaca cacacagaga gaataaacaa aaaactacaa aatcacaaa