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LOCUS XM_017158306 2420 bp mRNA linear INV 09-DEC-2024 (LOC108068625), transcript variant X4, mRNA. ACCESSION XM_017158306 VERSION XM_017158306.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017158306.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2420 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2420 /gene="LOC108068625" /note="zinc finger protein 391; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108068625" CDS 238..1350 /gene="LOC108068625" /codon_start=1 /product="gastrula zinc finger protein XlCGF26.1 isoform X2" /protein_id="XP_017013795.2" /db_xref="GeneID:108068625" /translation="MTHIRNHSAERKFVCTYCHKGFTQAANLRNHERIHTNDRPYQCV DCGKTFTQITNLNNHRRLHTGERPFVCNEPECGRSFAQVTNLNNHMKSHHKVQQYCCN VCNKKFTQVTSLNQHLQAHAGVTGYYCPRCPEKNFKLQSQLHTHMKTHGLAFPYECDK CDEKFLQQAHLDQHLKMHDEFKFKCDICPSSFNQESLLKKHVQRHVEGRYLSCPVANC AESFAVRQHLSKHLLTNHAHHELPPPKRSKKTGTLQTSQPLAMIGQPLSLQHTTGQRG RPPKNKNKATALAATAIKIEINEPLHSQHISSVSGLSIQQQINQHMQQQAAQQQAQQQ QQQQQAQQQQQQQAAQQQLLHLPMGQAVKARFIPTK" misc_feature 280..342 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(295..297,301..303,307..309,313..318,325..330, 337..339,379..381,385..387,397..402,409..414,421..423, 469..471,475..477,481..483,487..492,499..504,511..513) /gene="LOC108068625" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 316..393 /gene="LOC108068625" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 364..426 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 448..516 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 463..>600 /gene="LOC108068625" /note="N-terminal domain of Oryza sativa transcription factor SUPPRESSOR OF FRI 4 (OsSUF4), Arabidopsis thaliana SUF4 (AtSUF4), and similar proteins; Region: SUF4-like; cd20908" /db_xref="CDD:411020" misc_feature 463..519 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature order(469..471,487..489,508..510,514..516,535..537, 556..558) /gene="LOC108068625" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:411020" misc_feature 538..600 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:411020" misc_feature 538..600 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(553..555,559..561,565..567,571..576,583..588, 595..597,640..642,646..648,658..663,670..675,682..684, 724..726,730..732,736..738,742..747,754..759,766..768) /gene="LOC108068625" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 622..687 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 709..771 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 790..852 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 874..939 /gene="LOC108068625" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 2420 /gene="LOC108068625" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttgacgcttt tggtgtgtgg gtgtgcgtag cacgcaaaag aacaaaataa caataaatat 61 aaatagtgaa aaaatattaa atataatttg agtgattccg caataaacaa actgaattcg 121 cacgggaatt tgcaatccgt tcttttggcc gccagcttgt tgagcgtgga tctgatattc 181 aacgaggagg gctcctgccc actatgcaac aaaactttct cgcgcaaatc ctcgctcatg 241 acgcacatac gaaatcactc ggcggagcgt aagtttgtgt gcacctactg ccacaaaggc 301 ttcacgcagg cggccaactt gcggaaccac gaacgcatcc acacgaacga tcggccatat 361 cagtgcgtgg actgcggaaa gaccttcacg caaatcacca atctgaacaa tcaccgcagg 421 ctccacactg gagaacggcc cttcgtctgc aatgagcccg agtgcggtcg cagtttcgcc 481 caggtgacga acctgaacaa ccacatgaag tcgcaccaca aggtgcagca gtactgctgc 541 aacgtgtgca acaagaagtt cacgcaggtg acctcgctga accagcacct gcaggcgcac 601 gccggggtca ccggctacta ctgtccgcgg tgtccggaga agaacttcaa gctgcagtcg 661 cagctgcaca cgcacatgaa gacccacggc ctggcctttc cgtacgagtg cgacaagtgc 721 gacgagaagt tcctgcagca ggcacacctc gaccagcacc tcaagatgca cgacgagttc 781 aagttcaagt gcgacatctg cccgagcagc tttaaccagg agtcgctgct gaagaagcac 841 gtgcagcggc acgtcgaggg ccgctacctc tcctgtccgg tggccaactg cgccgagtcc 901 tttgcggtgc gccagcacct gtccaagcac ctgctcacca accatgccca ccacgagttg 961 ccgccgccga agcgctccaa gaagacgggc actctgcaga cgtcgcagcc gctggcgatg 1021 atcggccagc cgttgtccct gcaacacacg acggggcagc gtgggcgtcc gccgaagaac 1081 aagaacaagg cgacagcgct ggccgccacg gccatcaaga tcgagatcaa cgaaccgctc 1141 cacagccagc atatcagcag tgtcagtggc ctgtccatcc agcagcagat caaccagcac 1201 atgcagcagc aggcggccca gcagcaggcg caacagcagc agcagcagca acaggcgcaa 1261 cagcaacagc agcagcaggc ggcgcaacag caactgctgc acctgccgat gggacaggcg 1321 gtcaaggcgc gcttcatacc cactaagtag gttagttaag gatggaaagg tctctcttag 1381 cttaagcccc caacgatcag ctgctaaagt cccctgatta gcatagccat agccaaaaag 1441 tagcatcaca tccaagaaac aaacacacac tcgcacacac aaaataccat gaaatatgat 1501 attgcggatg cttctgaaat gcctagagat ctctgaaatg gaaaattgta aattagtttt 1561 attttacttg cgaatttcta ggttgtgttg tttttccaac tgtttgtaaa gatgaaattt 1621 catatgtacc gaaggttttt caaggccaac aattattttt ccccattaaa agtgtttata 1681 aatgcaagtc attcaaaaag aaaaaaaagt atgattttga ataggttgtt ttaatttttt 1741 attgactttt tcagtacagt tttttcagtt tcccttttac aaacactttg aaaaataaca 1801 tgacttgaaa atttgaaacg caatattact tttgtattga attattcaaa cgacacagca 1861 aaatcagttt tgagatcagc gtggagattt ctgaagcatc ccgaatttag agtcggcggc 1921 aagctgctgg ttcagtttgg tgtctgtctc cattttccgg ttctaaattt accagccaaa 1981 gcaatagaca aaccaaatgc ccccggaata aattgaaagt aaaccaaacc gctatgtata 2041 acatctagaa agaaaaacgc agcaccagat ggacagacaa aaacacaaac ggacttaaaa 2101 ttatgcacat aaacacacac atctttatat acatatatat tatatataca tgagatcagg 2161 ttgagaaatc tgcaacttaa atcgaattaa aattttaatg taatgcaaag gcacagcgaa 2221 acagaaaata aaatgttgaa aaaaatccga aagcaaatac aaattaacta cgattaaaat 2281 tacgcataga gaaaggcaac aaaaataatt cgattaaatt tggtatgtat ttatgttagg 2341 cattagctta agtgttttta ttttttttta ataaatcatt acaaaaaaaa aggaacctaa 2401 agaagggaag caagttataa