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LOCUS XM_017157745 4216 bp mRNA linear INV 09-DEC-2024 (Chpf), mRNA. ACCESSION XM_017157745 VERSION XM_017157745.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157745.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4216 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4216 /gene="Chpf" /note="Chondroitin polymerizing factor; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108068277" CDS 524..2989 /gene="Chpf" /codon_start=1 /product="chondroitin sulfate glucuronyltransferase" /protein_id="XP_017013234.2" /db_xref="GeneID:108068277" /translation="MRRPVTNLNRNHYFVIGLVLGLLLSFYIPQDIWELVQQEECPQE AAENLLIERFGQEFEPHLNLINKPLAAKKPVKNVIRPRYYSSELGIREKLFIGVMTSQ EHINTFATAFNRTTAHLVNKIKFFIYADSVKTNYKLKNIVGFTDTRESRRPFHVVKYI ADNYLDEYDYFLLVPDTVYVDARKLVKLLYHMSITFDLYMGGARIGLDPPPGGNSASM DDQPPEDEAPGASDRNYCSLEAGILLSSSVIRKMRNNLERCVRIGSTSDHSVNIGRCV KYASRVAGCQESFQGMRQYSYALDAPGRRHRDFSELAKEEAFRNASTVYPVQMPEDFY RLHAYYSKHHLEKVQERGYALEQKSYRIANGSISNKILEIRWPLGVPPPSAPETRHDI LTWQLLNGTHSFLPHGNAEHAVAPLSRIEALDFAKVLEIALQYASLKHPRLSYHSLHS AYRKFDATRGMDYQLHLSLQEGSGRSRRLVVKSFEVVKPLGRVEVVPSPYVTESTRIA MLVPAFEHQVPDAVQFVEQYERICMQNQDNTFLLLIFMYRLDSPSKGDEDPFKALKTL ALDLSSKYKTDGSRIAWVSIRLPEQLSEPVDSQAWLLHASMYGPRQLLSLVVADLALP KLGLESLVLLATPGMLFKADFLNRVRMNTIQGFQVYAPIGFQMYPCRWAQFCRECDTC DVSQSSGYFDRHNHDVIAFYSRDYVQARKLLHPQGLPIIRSDLDIDQLLLQSGGEERR PAGVESILDMFVAAQHSVHILRGVEPNLRFGQDVRNHLARGGSLPDSQPEQCGREQCI HLASRKQIGDAIIRYEDKSILHK" misc_feature 1286..2941 /gene="Chpf" /note="Chondroitin N-acetylgalactosaminyltransferase; Region: CHGN; pfam05679" /db_xref="CDD:461712" polyA_site 4216 /gene="Chpf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcaagattgt ttactttttt acttagcgcg cagcggaaaa gcggaaaacc gggccggatt 61 cgcgctcgaa tttttttatt attttttttc gccctgccgc cgcctgttgc cgccaattgg 121 tgtaaataaa gaaaagcgat tttagtgtgt gaaatgtatc gaaaatgaaa gagctgccga 181 agaagtgcgt gccgaagaaa gagagcggca aaaggtgcca aattaagaag taaaacgaaa 241 gcagaaagac gaagagagag gcgaaagcaa cagcaacaag tggtcgaaaa tgtgcaaatg 301 acaaattggt caaacaaaaa aaacagctcc tgtttcccgc gctctcgctc tctctcgcac 361 actcccagtc gcaccctctc cctcgcactc tcgcacgcac atcctcgtca ttggccgtct 421 cgctcgcacg cggtgggaac agaaacagaa gcaggaacgg gaacagccgg cggtcaagtt 481 caagtggggg cagaaatagg aagtgggaac aggaacgaga aacatgcgga ggcccgttac 541 gaatttgaat cggaatcact actttgtcat cggcctggtc ctgggcctcc tgctcagctt 601 ctacattccg caggacattt gggagctggt gcagcaggag gagtgtcccc aggaggccgc 661 cgagaatctg ctgatcgagc gattcggcca ggagttcgag ccccatttga acctcatcaa 721 caagccgctg gcggccaaaa agccggtgaa aaatgtgatt cgcccgcgct actactcctc 781 ggagctgggg atccgcgaga agctcttcat cggggtgatg acctcgcagg agcacatcaa 841 cacctttgcg acggccttca accgcaccac cgcccacctg gtgaacaaga tcaagttctt 901 catctacgcg gacagcgtga agaccaacta caagctgaag aacatcgtgg gcttcacgga 961 cacgcgggag agccgccgtc ccttccatgt ggtcaagtac atagcggata attatctgga 1021 cgagtacgac tacttcctgc tggtcccaga caccgtctac gtggatgccc gcaagctggt 1081 gaagctgctc taccacatga gcatcacctt tgacctctac atgggtggtg cccgcattgg 1141 gttggatcct ccgcccggtg gcaacagtgc ctcgatggac gaccagccgc cggaggatga 1201 ggctcccggg gccagcgatc gcaactactg ctccctggag gcgggcatcc tgctcagcag 1261 cagcgtcatc cgcaagatgc gcaacaacct ggagcgctgc gtccgcatcg gaagcaccag 1321 cgaccacagc gtcaacatcg ggcggtgcgt caagtacgcc agtcgggtgg ccggatgcca 1381 ggagagcttt cagggcatgc ggcaatatag ctacgccttg gatgcgccgg gccgccgtca 1441 tcgcgacttc agcgaattgg ccaaggagga ggccttccgc aatgccagca ccgtgtatcc 1501 cgtccagatg ccagaggact tctaccgcct gcacgcctac tactccaagc accacctgga 1561 gaaggtgcag gagcgtggct atgcgctgga gcagaagtcg taccgcatcg ccaacgggag 1621 catctcgaac aagatcctgg agatccgctg gccgctgggc gtgccgccgc cgagtgcgcc 1681 ggagacgcgc cacgacatcc tcacgtggca gctgctgaac gggacgcaca gcttcctgcc 1741 gcacggcaat gcggagcacg cggtggcccc gctgtcgcgg atcgaggcac tggactttgc 1801 caaggtcctg gagatagccc tgcagtatgc gtcgctcaag catccgcggc tcagctacca 1861 cagcctgcac agtgcctaca gaaagttcga tgccacgcgg ggcatggact accagctgca 1921 tctcagcctg caggagggtt cgggccggag tcgccggctg gtggtcaaga gcttcgaggt 1981 ggtgaagccc ctgggtcgcg tggaggtggt tccctcgcca tatgtgacgg agagcacgcg 2041 gattgccatg ttggtgcccg cctttgagca tcaagtgccg gatgctgtgc agtttgtgga 2101 gcagtacgaa aggatatgca tgcagaacca ggacaacacc ttcctgctgc tgatcttcat 2161 gtaccgccta gattcgccca gcaagggcga cgaggatccc tttaaggctc tgaagacgct 2221 ggccctggat ttgtcctcca agtacaagac ggacggctcg aggatcgcct gggtgtccat 2281 ccgtctgccg gagcagctga gcgaaccggt ggactcgcag gcctggctgc tccacgcctc 2341 catgtacggc ccacgccagc tgctcagcct ggtggtggcg gatttggccc tgcccaagct 2401 gggcctcgaa tccctcgtcc tgctggccac gcccggcatg ctcttcaagg ccgacttcct 2461 caatcgcgtg cgcatgaaca cgatccaggg cttccaggtg tacgcaccga tcggcttcca 2521 aatgtacccc tgccgctggg cgcagttctg ccgcgagtgc gacacctgcg acgtcagcca 2581 gagcagcggg tacttcgatc gccacaacca cgacgtgatc gccttctaca gccgggatta 2641 tgtccaggcc cgcaagctgc tgcatccgca gggactgccg atcatccgca gcgacctgga 2701 catcgaccag ctgctgctgc agtccggcgg cgaggagagg cggccggcgg gcgtggagag 2761 catcctggac atgttcgtgg cggcgcagca ctcggtgcac atactgcgcg gcgtggagcc 2821 gaatctgcgc ttcggccagg atgtgcggaa ccacctggcc cgcggaggat ccctgccgga 2881 cagccagccg gagcagtgcg gccgggagca gtgcatccat ttggcgtccc gcaagcagat 2941 cggcgacgcc atcattcgct acgaggacaa aagtattctg cacaaatagt aaatagttaa 3001 aagcagggat ccctgctgga attcagctgc tgctcctgcc tgtaatatca tcagttcctt 3061 tttaaaatat ttccatgtgt gactgaagtg aacgaagtga atgactgcga ctgcgactgc 3121 atgtgtcgaa tagatcttat acaggactaa tgccaactct tatactcgca cccaaaaaaa 3181 gggaaacttt gggacccacg tatataggta aacctgtagc ggacctatct caatcaccac 3241 ttagtgttta ggcctaggca attcccgttg ttgcttgctt taaagtgaaa ctttcaatgc 3301 tcaaaatggt agacagcaat tagtcagtag ttaaatgtag gaacaaaatg taggggccat 3361 tcaacagaca ttcgattttc agctttcaat ttgtcaattt tcgcatgtaa atactacaca 3421 tatctctatt agtgtttcct attgactcct atttaaatga ctagttaagc taagtgttat 3481 agcgcctaag tgaaacgaac gatgtggctg tacgacaaaa taaccagatg ccgccttgcc 3541 tcaaagtgtt acaatcccta taaatgggct ctctcaaaaa acggtgtgcc aaataaacgg 3601 aaatattata caaaagctgg tctaaattag ggagtgctta cttggacctt gttcctctta 3661 cataaaaact aaacttaaga tgtaaaaaac taattatatc agctaaggga aaatattaat 3721 aaatattaat aaatattaaa tttgccagca atttgctttt aaaacgaaaa agtattgata 3781 cgatttgttt attccaattt agtaaataat ctttgtaaat aaacaaaaaa gaatggatat 3841 tttaaaatga atattgttaa gtgcttgcca gtttccctta gccgatattt actgtaggtt 3901 tctacacttg accatttgcc agcacatcag ttttagcatc gaataagaag tctgccagtc 3961 aaattcttat cattacgatt acgaggggaa atccgattaa tttattaaac aaattattat 4021 agaaatacac tcgccaggag aagtcctcct cctcccttcc cttgtcccca aaaaaaacct 4081 tttttttaca tttagtcata gagtaaagtt actgtatctg tactgtttac gtgtaggaat 4141 tgttgttatt gcagaataat acaaattatg tatgtgcata tgtacaataa atttaaatgt 4201 tttctttttt cttcaa