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LOCUS XM_017157558 2357 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017157558 VERSION XM_017157558.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157558.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2357 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2357 /gene="Nf-YC" /note="nuclear factor Y-box C; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108068144" CDS 136..1935 /gene="Nf-YC" /codon_start=1 /product="nuclear transcription factor Y subunit gamma" /protein_id="XP_017013047.2" /db_xref="GeneID:108068144" /translation="MYATNNGGTNKAPNSNATAMFENTITVTPIKMELNQGYAKNPQQ NPSMQRRTPNAVVVTSSSAAVAAPQQQGVPLGSCTLVNPSMSVTMATAASASASPGGT GGASGAPAKEKPTKATRNQVARKPPPTIDNFWPNIVSEVHGIGQVDAKHQVLPLARIK KIMKLDENAKMIAGEAPLLFAKACEYFIQELTMHAWVHTEESRRRTLQRSDIAQAIAN YDQFDFLIDIVPREEIKPSASSSSASSSSAAAAAGQKGKDSSSGSISTSAAAAATASS NASSASVAAGSSVASGSNVPAAGKLDNTGAASAAEVLGFSTVNPDIFSAQLQQQQQQQ QQQQHHQAHPQQVQIIQQGAGGQQLQYFIALPGQQAAQLVQQQPQPAQNHLSNSLGIN IVSAQQPTQQLILTAGPNGQLTATPAPQTAQQQQTALLQNLAQQQQQHQQQQQQQQIQ LLQQVVTPTGELTNVPIAINASHLHLLQRLQMQQQQQQQQQQQQQQQQQQVIIPTQLL TAQQLLQLGASPTVAHQQQQVQQQQQQQVQVQVQQQHANLSQSNANATPIFINAQAAT QQQQQQAAQQQHQQQQQQQQQQQQAQTISGGFR" misc_feature 577..825 /gene="Nf-YC" /note="histone-fold domain found in nuclear transcription factor Y subunit gamma (NF-YC) and similar proteins; Region: HFD_NFYC-like; cd22908" /db_xref="CDD:467033" misc_feature order(595..600,607..612,619..624,628..633,640..642, 646..654,658..663,667..675,679..702,706..714,721..723, 748..762,769..771,796..798,805..810,817..822) /gene="Nf-YC" /note="heterodimer interface [polypeptide binding]; other site" /db_xref="CDD:467033" misc_feature order(595..609,613..615,625..627,646..657,745..753, 757..759) /gene="Nf-YC" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:467033" misc_feature order(628..630,634..636,793..798,802..807,814..819) /gene="Nf-YC" /note="trimer interface [polypeptide binding]; other site" /db_xref="CDD:467033" polyA_site 2357 /gene="Nf-YC" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 caagacaagg gtgtgcatta cgcatttgct ttgcgaatca gagccgactt taaacaatta 61 ttgtggtctc cagccggtcg cccctgatcc gaggttgccg ccaacgccga gcttgggtca 121 ccagccagcc ggaccatgta cgccaccaac aatggcggca cgaacaaggc gccaaatagc 181 aatgccaccg ccatgttcga gaacaccatc acagtgacgc caattaagat ggagctgaac 241 cagggctacg ccaagaatcc ccaacaaaat ccctccatgc agcggaggac gcccaatgca 301 gtggtggtca ccagctcctc cgccgccgtc gctgcgccac agcagcaggg ggttcccctg 361 ggcagctgca ccctggtgaa tcccagcatg agcgtgacca tggccaccgc cgcctccgcc 421 tccgcttctc caggaggaac tggaggagct agtggtgccc ccgccaagga gaagcccacc 481 aaggccacgc gcaaccaggt ggcccgcaaa ccgccgccca ccatcgacaa tttctggcca 541 aatatcgtca gcgaagtgca tggcattggt caggtggatg ccaagcacca ggttcttcca 601 ctggcgagga tcaaaaagat catgaagctg gacgagaacg ccaaaatgat tgccggcgag 661 gcgccgctgc tcttcgccaa ggcctgcgag tacttcatcc aggagctgac catgcacgcc 721 tgggttcaca ccgaggagag ccggcggcgg acgctccagc gctcggatat tgcccaggcc 781 atagccaact acgatcagtt cgatttcctc atcgacattg tgccgcgcga ggagatcaag 841 ccgtcggcct cctcctcctc cgcctcctcc tcctcggcgg cggcggcggc ggggcaaaaa 901 ggcaaggata gcagctccgg ttccatttcc accagcgcag ctgcagcagc cactgcttcc 961 agtaacgcct ccagtgcttc agtggctgct ggctcctctg tggccagcgg atccaacgta 1021 cctgccgcgg gaaagctgga taatacggga gcagccagtg ccgccgaggt tctgggattc 1081 agcaccgtca atccggacat cttctcggcg caactgcagc agcaacagca acaacagcag 1141 cagcagcagc atcaccaggc gcatccgcag caggtacaga tcatccagca gggcgccggt 1201 ggccagcagc tgcagtactt cattgcgctg cccggccagc aggcggcaca attggtgcaa 1261 cagcagccgc agcccgccca gaaccatctg tccaatagtc tgggcatcaa catcgtctct 1321 gcccagcaac ccacgcagca gttgatcctc accgccggtc ccaatggcca gttgacggcc 1381 actccagcgc cccaaacggc gcagcagcag cagaccgctc tgctccagaa tctcgcccag 1441 cagcagcagc aacatcagca gcagcagcaa cagcagcaga ttcagctact ccagcaggtg 1501 gtcacgccca cgggggagct gaccaatgtg ccgattgcca tcaatgccag ccatttgcat 1561 ctgctgcagc gcctgcagat gcaacagcag cagcaacagc aacagcagca gcaacaacag 1621 cagcagcaac agcaggtgat tatacccacc caactgctga cggcacagca gttgctccaa 1681 ttgggagcct cgcccacggt ggcccatcag cagcagcagg tgcaacagca acagcagcag 1741 caagtccaag tgcaagtcca acagcaacat gccaatctca gccagagcaa tgccaatgca 1801 acgccgatct tcatcaatgc ccaggcggcg acgcaacagc agcagcagca ggcggcgcaa 1861 cagcagcatc agcaacagca gcagcagcaa caacagcaac agcaggcgca aacgatctcc 1921 ggcggatttc ggtaaaagct cgaagaatcc tggttaaccg gacagttggc aatcatatcg 1981 aagcatcggg aggcattgga atcggacatt gattgcgcca tccagcacaa acaaacacac 2041 acaatgtata atattatagt ttacgtagtt gtatacggat tttgtatatc gggaggagat 2101 tatatatagc tagtgtctaa gtcgtaggca tctctctctg tgtagaaacg atttatcaat 2161 tgtaatttat tgctgacacc tggccgcagg tttcaccatc ctcccaaaaa aaaacaccgc 2221 cacctaaaac ctaaaaccta aaccactttt aaacgtagca cttagacaga gaagattggt 2281 ttattatgta tttgtacttc taactaagct aagctctgat aaacaattat aagccaccaa 2341 ggactatgtg ccagaaa