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LOCUS XM_017157539 6231 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017157539 VERSION XM_017157539.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157539.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6231 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6231 /gene="pod1" /note="coronin pod1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068133" CDS 301..4110 /gene="pod1" /codon_start=1 /product="coronin-7 isoform X1" /protein_id="XP_017013028.2" /db_xref="GeneID:108068133" /translation="MAWRFKASKYKNAAPIVPKAEACVREICVGSYQTYGNNIAASGA FMAFNWEHTGSSVAVLPLDDCGRKSKTMPLLHGHTDTVTDLKFSPFHDGLLATASQDC LVKIWHIPEKGLEQSLSDPEAIFSHKQRRVETVGFHPTADGLMYSTAAGCVALFDLST QKEIFSNNEHPEVIQSASWREDGSVLATSCKDKCVRIFDPRAAGSPIQLTAESHQSIK DSRVVWLGNQQRILTTGFDAARLRQVIIRDVRNFSTPEKTLELDCSTGILMPLFDPDT NMLFLAGKGDTTINYLEITDKDPYLIEGLRHTGEQTKGACLVPKRALKVMEAEVNRVL QLTSNMVIPIMYQVPRKTYRDFHADLYPETTGYKTELVAGEWLNGSNQAVPKMSLDPA KREHGDEPIIIHRGNLSDFVKNLENQRAKSQTTAAKRNDNEHFVMLNKGNNFEEKNGN DNSSESNGKKSTASQSQQSQPDGECSELIRKFEAKYKVDSEKEKAANAYAQSQEDDKE SPTEQEHSTGSSEEHSSHSSGGGMDNHSASGSHSPPKPMPRTSRNNSLPEASDSAGES SSTTTPRPRPRTTAASAYKPRLGPKPFSSTTGDVSFDKVFAVPLAPGSHENISNVGQE SGVAELIPPAQGPKPDLIVEIEIKKKHEREPVVGGNGVQKSLTTSERRKSSADDDESS DKIFEQSSESSENSAEGEDRTDADLRRSCSSRSSFAERRRIYENRSKSQVDEKPQSPV PLRREHSKVEPLKPSQQQQQQQIDTKRISVPEGKLMEEHRRGNGAAGLKKSATEAAFS AASTKRTSTVFGKVSKFRHLKGTPGHKSTHIENLRNLSRQIPGECNGFHANQERVAVP LSGPGGKIAIFELSRPGRLPDGVIPSLVNGSNIMDFQWDPFDAQRLAVACDDGIVKLW HIEAGGLSEPTNSPAGELTAHLDKIYFIRFHPLAADVLLTASYDMTIKLWDLRTMSEK CSLSGHTDQIFDFAWSPCGRLGASVCKDGKIRVYNPRKSETPIREGNGPVGTRGARIT WALEGHYIVCTGFDKVSERQISVYNAQKLSTPLNTASLDVSPSILIPYYDEDSSTLFV TGKGDSTIYCYEITDEEPYICPLSHHRCTSLHQGLSFLTKNHCDVASVEFSKAYRLTN TTIEPLSFTVPRIKSELFQDDLFPPTRITWSATLSAEDWFASNDKAAPKVSLKPEGME TLSSIQQVPAQPVKKPDHPQFGGQKSEFEINKQQEIQKSVSARMEFTTKLEQDDMEGV DENEWQE" misc_feature 307..501 /gene="pod1" /note="Domain of unknown function (DUF1899); Region: DUF1899; pfam08953" /db_xref="CDD:462645" misc_feature 409..>1467 /gene="pod1" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 547..681 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 694..798 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 820..930 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 949..1080 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 1099..1182 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 2734..>3888 /gene="pod1" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature order(2863..2865,2881..2883,2899..2904,2953..2958, 3010..3012,3022..3024,3040..3045,3100..3105,3157..3159, 3172..3174,3190..3195,3232..3234,3283..3285,3298..3300, 3316..3321,3358..3363,3418..3420,3430..3432,3460..3465, 3562..3564,3577..3579,3595..3600,3631..3636) /gene="pod1" /note="structural tetrad [active]" /db_xref="CDD:238121" misc_feature 2959..3078 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 3118..3228 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 3244..3357 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 3379..3501 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 3520..3591 /gene="pod1" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" polyA_site 6231 /gene="pod1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aattagtatc ttttgcccga tttttctcag ggattttccg gtatttatat actgccaaaa 61 ataccacagc cgacttgaaa tttaaattgt gctcggatta attgtggtcc cgagttgaaa 121 cgcaactgga gaggaagagg gagaggatag ccgagcgaaa gagagcgact ggcctatacc 181 atatagcata tacaatccac attctatact ccgcactcga gcagcgaaca tccagtgtcc 241 acatccgcat cggatcgcct tcaccatcgc catcacatcg cggagcagca accagtaatt 301 atggcctggc gattcaaggc ttccaagtac aaaaatgccg cacccattgt gcccaaggcg 361 gaggcctgcg tccgcgagat ctgcgtgggc agctaccaga cctacgggaa taatatcgcc 421 gcctccggcg ccttcatggc cttcaactgg gagcacaccg gttccagtgt ggccgtcctc 481 ccgctggacg attgcgggcg gaagagcaag accatgccgc tgctccacgg gcacacggac 541 acagtgacgg acctcaagtt ctcgccgttc cacgacggac tgctggccac cgcctcgcag 601 gattgcctgg ttaagatctg gcacataccg gaaaagggtc tggagcagtc gctctccgat 661 ccggaggcca tcttctcaca caagcagcgt cgcgtggaga cagtgggctt ccatccgacg 721 gccgatggcc tgatgtactc cacagccgcc ggctgtgtgg ccctcttcga tctcagcacc 781 caaaaggaga tcttctcgaa caatgagcac ccggaggtga tacagtcggc cagttggcgc 841 gaggatggct ccgttttggc caccagctgc aaggacaagt gcgtgcgtat cttcgatccc 901 cgagccgccg gttcgcccat ccagttgacc gccgaatcgc accagagcat caaggattcg 961 cgcgtcgtct ggctgggcaa tcagcagcgc atcctgacca ccggtttcga tgccgcccgc 1021 ctgcgtcagg tgatcatccg cgatgtgcgc aacttcagca cgcccgaaaa gaccctcgaa 1081 ctggactgct ccacgggcat tctaatgccg ctcttcgatc ccgacacgaa tatgctcttc 1141 ctggccggca agggcgatac gacgattaac tatctggaga ttacggacaa ggatccgtat 1201 ttgattgagg gactgcgtca caccggcgag cagacgaagg gcgcctgtct ggtgcccaag 1261 cgggcgctca aggtcatgga ggcggaggtc aaccgagtgc tgcagctgac ctctaacatg 1321 gtcataccca ttatgtacca ggtgcccagg aagacatatc gcgatttcca tgccgatctc 1381 tatccggaga ccacgggcta caagacggaa ctggtggccg gcgaatggct gaatggcagc 1441 aaccaggcgg tgcccaagat gagcctcgat cccgccaagc gcgagcatgg cgatgagcca 1501 attattattc atcgcggcaa cctaagcgat ttcgttaaga acctggagaa tcagcgggcc 1561 aagagccaaa ccaccgccgc caagcgcaac gataacgagc actttgtcat gctgaacaag 1621 ggcaacaatt tcgaggagaa gaacggcaat gacaacagca gcgagagcaa cggaaagaag 1681 agcactgcct cgcaatccca acagtcgcag ccggatgggg agtgcagtga gctcatccgg 1741 aagttcgagg ccaaatacaa ggtggactcg gagaaggaga aggcggcgaa tgcctacgcc 1801 cagtcccagg aggatgacaa ggagtcgccc accgagcagg aacactcgac gggcagcagc 1861 gaggagcact cctcgcactc atccggcggt ggaatggaca atcactcggc cagcggcagc 1921 cactcgccgc cgaagcccat gccgcgcacc tcgcgcaaca attccctgcc ggaggccagc 1981 gattccgctg gggaatcgag cagcaccacc acgccacgcc cgaggccgcg caccacggct 2041 gcgtctgcct acaagccacg tttgggcccg aagcccttct ccagcaccac gggtgacgtg 2101 tcgttcgaca aggtgttcgc cgttcccctg gcgccgggat cccatgagaa catctcgaac 2161 gtgggccagg aaagcggagt ggcggagctg atcccgcccg cccaggggcc aaagccagat 2221 ctcattgtgg aaatcgaaat caaaaagaaa cacgaaaggg agcctgtggt gggcggaaat 2281 ggagtccaga aatcgctaac cacctcggag cgtcgcaagt cctcggctga cgatgatgaa 2341 tcatccgata agatattcga gcagagctcc gagtcgtcgg agaattcggc ggagggcgaa 2401 gatcgcacgg atgcggatct gcgacgcagc tgctcctcga ggagcagctt tgccgagagg 2461 cggcgcatct acgagaatcg ctccaagagt caggtggacg aaaagcccca gtcgccagtg 2521 ccattgcgtc gcgagcactc caaagtggag ccactgaagc ccagtcaaca gcagcagcag 2581 cagcagatcg acaccaagcg catttcggtg ccggagggca aactaatgga ggagcatcgc 2641 cgcgggaatg gcgccgccgg tttgaagaaa tccgccacgg aggcggcctt cagtgcggcc 2701 agcaccaagc gcacctccac cgtcttcggc aaggtgtcca agttcaggca tttgaagggc 2761 actcccggcc acaagtcgac gcacatcgag aatttgcgca atctgagccg ccagataccg 2821 ggcgaatgca atggcttcca tgccaaccag gagcgcgtgg cggttcccct ctccggaccc 2881 ggcggcaaga tagccatctt cgagttgagc cgaccgggac gactgccgga tggcgtgatt 2941 ccatcgcttg tgaacggcag caacatcatg gacttccagt gggatccctt cgatgcccag 3001 cgtttggccg tcgcctgcga cgatggcatc gtgaagctct ggcacatcga agccggcgga 3061 ctgagtgagc cgacaaattc gccagccggc gagctgaccg ctcacctgga caagatctac 3121 tttatccgtt tccatccgct ggccgccgac gttctgctga ccgccagcta cgatatgacc 3181 atcaagctgt gggatttgcg caccatgagc gagaagtgct cgctgtcggg gcacacggat 3241 cagatctttg acttcgcctg gagtccctgc ggccgtttgg gcgccagcgt gtgcaaggat 3301 ggcaagatta gggtctacaa tccgaggaaa tcggagacgc ccatcaggga gggcaatgga 3361 ccggtgggaa ctcgaggagc tcgcatcacc tgggcgctgg aggggcacta catagtctgc 3421 actggatttg ataaggtttc cgagcgacag attagcgtgt acaatgccca aaagctgtcg 3481 acgccattga acacggccag tttggatgtg tcgccctcga tattgatacc ctactacgac 3541 gaggacagct ccacgctgtt cgtcaccggc aagggcgact cgaccatcta ctgctacgag 3601 atcaccgacg aggagccgta catctgcccg ctgtcgcacc atcgctgcac ctcgctgcac 3661 cagggcctca gcttcctcac caagaaccac tgcgatgtgg ccagcgtgga gttctcgaag 3721 gcctatcggc tgaccaatac caccatcgag ccgctaagct tcacagtgcc ccgcattaag 3781 agcgagctgt tccaagacga tctgttccca cccacacgca tcacctggag cgccacgcta 3841 agcgccgagg actggtttgc cagcaacgat aaggcggcac ccaaggtcag cttgaagccg 3901 gagggcatgg agacattatc ttccatacag caagtgccag cgcagcctgt gaagaaaccg 3961 gatcatcccc agttcggcgg tcagaagtcg gaattcgaga tcaacaaaca gcaggagatc 4021 cagaaatcgg ttagcgcgcg catggagttc accaccaagc tggagcagga cgacatggag 4081 ggcgtggacg agaacgagtg gcaggagtag cagtgcagcc agcgtctgcg gcggacatga 4141 atcagttcac aatttagcgt ttaaccaatg ggcgtaactc ttttttttac caatctagac 4201 atgacagcag cagaagcaac agcaaaagtg ctcgacataa acataaacaa catatatata 4261 cttgtgggcg agcgtatata gagaactcgt agttaagccg aaagtaaaac taacacaaca 4321 cacgacatcc tcatccctcg atcctcattc ctcgatcctc gtcagaatcc cagcatttag 4381 ttcctcgctc ctccgccaat ttactgcagt tgctcaataa ttgccaaatt acaaatcata 4441 agccagtttt gttcgttttg tttgtgttgt ttttttttta aatctatata ttttgtgtgt 4501 attaattttt tttataattt acccatacat atattttgtg ttttttatgt gtgctattta 4561 agtagttagt ccaaaattag tttagcctac ttaggtgttt acacttacga ttaatttcct 4621 gggttctccc cgagtccttc agtttgtgtg gccatatatg tataggatat atggaaggac 4681 ttagatgata ctacttttac atatacgcat atgtatttcc ctctcagttt gtttcatgtc 4741 tgcatgcatg cgagtgagtg agtgagagag cgagagagtg tgtgtctgtc cccctctttc 4801 gcattatttc accccctgta atcctgtaat cccagacacc ttttcattcc cccatccaag 4861 acaagaaact aaaacatata gactgtagcc aaaaaatatt tgctgagaat tacaatcaag 4921 cgagacaaga caatttttgt actgtataat gcgtaaatca aacatactgc aacagccgaa 4981 tcaaaccgaa aagacatgca aacaacaatt ccaaaatgta taacgaaaag acttgaacag 5041 atctgaatgg atctccatcc tctgaatatc ctgcaccccc gaaaaaatcc cctactaacc 5101 cgaaaaagga aagtaataag ttgccattga aatgcgttta taaaaaagtg aaaaatgaaa 5161 aaaggcaata gaacgtaact cgagtagcat acccataggc aataacgttt tgtacttgca 5221 atagaatata cacatttaca catatatata cacgatatat atatagtata tattttgtat 5281 accaatcgta actgaaaacc aaggccaact tccggctgaa acgactgaac tgatccaaca 5341 gcataatagc gaatagagtg gcaaatctat aaaaatcttt cgaaaacaaa acaagaacaa 5401 cataacagac cagaccaatt ctcgggtaac gggcaatatt gtgctagaca aggttctatt 5461 atacagatta tatatacaca cacataccat acgcatagtt ataggcatat aaacgtcgca 5521 aagccaattc tatattccat attccaattc aaaatcaaac tccaagctgc atttaaatcc 5581 aaacgccatg gaacgactga caaaagtatt cgcttaacat tctgatctga tctgatcctc 5641 gactagtact tatatgtcag agattatccc aaaaagaaga cgaatttcca gaggtctgtg 5701 gatatggaat cgatttagat cggggaaaca aagggatcgc agttctataa tgtcctcccc 5761 ccccaaacaa aatcccattc caaattcccc gaaccgaccg cccgcagata ttatgtcatt 5821 ctgtatttat tagccatatt cgattacgat tttcgaacgt ctctcttatt tatatttata 5881 tttatatata tctataacaa taccaatata cgaaaataca acttcaagcg atatataata 5941 cgatgataaa cgagtgaagg acgacgattg attgattgac gattcacgat tgacgagtgt 6001 gtaggcagag agtgaagtag agaagaagta ggatgcagaa gcatcggcag aaggagcaga 6061 atcggaatca gaagcataca cattatttat acaatttatt ttacagtacg agtatatccg 6121 ataaccccca tccgatactc tagcactaag ttataattac aataataata atgaaggcaa 6181 aaatatattt atatacataa ttcaataaaa aaaacaagcg aaaaatataa a