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LOCUS XM_017157537 2216 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017157537 VERSION XM_017157537.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157537.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2216 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2216 /gene="Setd3" /note="SET domain containing 3; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108068130" CDS 177..1820 /gene="Setd3" /codon_start=1 /product="actin-histidine N-methyltransferase" /protein_id="XP_017013026.2" /db_xref="GeneID:108068130" /translation="MGKNNNKRNKKAKQPNGSASGCTASSGEDVDVDQQAARSLPTLN PKKRNQVNKLVEELLELVEKQPANPNEEWRQYEQLQQLLKQLMILEEPLSQAVCPPIS DSASDSPEDQSRLAKVEAFAEWAAQGGVHSEGLEIAIFPGYQLGLRATRPLAAEELVL SVPRQLIFSEESDSDCRLFGNMPQATHLNLAYDLLIEKIRGPFSQWRPYIDVLPAKYN TVLYFSAKQMERLRGTAACSLALRQCRVIAKQFGFLYRYAHILTERSRGLRSLPGDRG LFFTQHGLCYKLYRWAVSTVMTRQNLVPSEKQETADNPKFISALIPYWDMANHRPGKI TSFYGAVSRQLECTAQEACAAGEQFFIYYGDRSNTDLLVHNGFVDVNNLKDYVNIRVG LSPTDALAAKRASILDKLNIRHTAELRVLPAPEFISKELLAFVRVFKMSAEQLDHWCS DLERAGDLLHIDCALETDHETRTWQFLEDRLKLLLAVFDKELREADEAKELAELEIKE GGGGSKPGQEIELMLLLYRRLERSILAGALQYAQEHRKV" misc_feature 531..1310 /gene="Setd3" /note="SET domain found in SET domain-containing protein 3 (SETD3) and similar proteins; Region: SET_SETD3; cd19176" /db_xref="CDD:380953" misc_feature order(603..605,609..611,816..818,1068..1073,1149..1163, 1263..1265,1299..1301,1305..1307) /gene="Setd3" /note="SAM binding site; other site" /db_xref="CDD:380953" misc_feature order(606..611,660..662,1062..1079,1149..1163,1182..1184, 1257..1268) /gene="Setd3" /note="putative active site [active]" /db_xref="CDD:380953" misc_feature 1356..1778 /gene="Setd3" /note="Rubisco LSMT substrate-binding; Region: Rubis-subs-bind; pfam09273" /db_xref="CDD:462737" polyA_site 2216 /gene="Setd3" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcccggc gcagggtcat actgcacaca cagctgatcg gccgccgcgt gttttttttg 61 gaactttcct tatttggcat ttggctgttg ttgttttggg ccgccggtac cgctcaccgc 121 ctaccgctta gcacttcgtc tctctcgctc ccgctctcgc acccgcactc cgcgccatgg 181 gcaagaacaa caacaagcgc aacaagaagg cgaagcaacc gaatggatct gcatctggat 241 gcactgcctc ctcgggcgag gatgtggacg tggaccagca ggcggccagg tcgctgccca 301 ccctgaaccc caagaagcgc aaccaagtca ataagctggt ggaggagctg ctcgaactgg 361 tggagaagca gccggcgaat cccaacgagg agtggcgcca gtacgagcag ctgcagcagc 421 tgctcaagca gctgatgatc ctggaggagc cgctcagcca ggcggtctgt ccgccgatca 481 gtgactccgc ctccgactcc cccgaggatc agagccgcct ggccaaagta gaggccttcg 541 ccgagtgggc cgcgcaaggc ggcgtccaca gcgagggcct ggagatagcc atcttcccgg 601 gctaccagct gggcctgcgc gccacccgcc cgctggcggc ggaggagctg gtgctcagcg 661 tgccccgcca gctgatcttc tccgaggaga gcgactccga ctgccggctc tttggcaaca 721 tgccgcaggc cacccacttg aacctggcct acgacctgct catcgagaag atccgcggcc 781 ccttcagcca gtggcgcccc tacatcgacg tcctgcccgc caaatacaac acggtgctct 841 acttcagcgc caagcagatg gagcgcctcc gcggcaccgc cgcctgctcc ctggccctgc 901 gccagtgccg cgtcatcgcc aagcagttcg ggttcctcta ccgctacgcc cacatcctca 961 ccgagcggag caggggcctc aggagcctgc ccggcgacag gggcctcttc ttcacgcagc 1021 acggactctg ctacaagctc tacagatggg ccgtttccac ggtgatgacc cgccagaatc 1081 tggtgcccag cgaaaaacag gaaacggctg acaatccaaa gttcatttcg gccctgattc 1141 cctactggga tatggcgaac caccggccgg ggaagatcac ctccttttac ggcgccgtct 1201 ccaggcaact ggagtgcacc gcccaggaag cctgtgccgc cggagagcag ttcttcatct 1261 actacggcga tcgatcgaac accgatcttc tggtgcacaa cggctttgtg gacgtgaaca 1321 acctgaagga ctatgtgaat attcgcgtgg gtctcagtcc tacggacgca ctggccgcca 1381 agagggccag cattctggac aagctgaaca tccggcacac ggcggagctg cgcgtgctgc 1441 cggcaccgga gtttatctcc aaggagctgc tggccttcgt ccgggtgttc aagatgagcg 1501 ccgagcagct ggaccactgg tgcagcgacc tggagcgagc aggcgacctg ctgcacatcg 1561 actgcgcctt ggagacggat cacgagacgc gcacctggca gttcctggag gaccgattga 1621 agctgctgct ggcggtcttc gataaggagc tgcgggaggc cgacgaggcg aaggagctgg 1681 cggagctgga gatcaaggag ggcggcggcg gcagcaagcc cggccaggag atcgagctca 1741 tgctgctgct gtaccgccgc ctggagagga gcatcctcgc cggcgcactg cagtacgccc 1801 aggagcatcg caaggtctag ggattacgga gcaccatttt caccctcaca caattcgagt 1861 ggccatcgaa ggatcgacat cagcaaatca gaactctgaa ctcagtctag cattagcaat 1921 tagctatctt ttttttttct accattactt aacttatttt aaccgaaagt tttagtcgag 1981 tgcttctgga gattggatac atggaaacca aattaatgaa tagtttgtac aacgatcgac 2041 tgttgaatat gagcggaata ttcgaaatat tctacgcgat tttacactcg tcctcgtcaa 2101 gtgttgtctg cgcattgtag tttatagcgt ttaattgttt tatgtttgtt tatttttttt 2161 aattttaata ataaccattt ttagtatttt tgaattaaac atgaagtcaa acgcaa