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LOCUS XM_017157519 2135 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017157519 VERSION XM_017157519.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157519.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2135 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2135 /gene="p-cup" /note="presidents-cup; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108068113" CDS 131..1987 /gene="p-cup" /codon_start=1 /product="outer dynein arm-docking complex subunit 4 isoform X1" /protein_id="XP_017013008.2" /db_xref="GeneID:108068113" /translation="MSWSSGLNNAGVCSLLPQLRPWQRIEWRPCIQSQIYRDWGVYYT RRLLNHTALESFGRAVAVCKEEEAPRFSPSAHGGVAEPGVCLEDYKSLFLRGRCHRSL ARPDLALLDVQRAQKALRSVMKSSSVSEAAHIIAEKCDNLFEANEFESTLTTLHSEGR PFGGQLAHGRFRLIKEKTLDVFEDTLGESLRPFMHEHGGVLEEVSRRQKELAAHDPRP LWKTLRERRQCDVQSVLIKQPAQLTPLEKARRRSSERLYNYNYMGRSAVDIALLRQLR SDKNLLDPLRIQTTPSMRQLSEEQYAIVRRFMKMLHARNPLYNRRYVRQRKGGVCEQE RRRRREMHLFHTQYQTRRDCLRMLHEVHRLRREGDVERLSDYVEHIMSGFVGLKTQRT LPWKWELLNDIYNALAMAHCDRCAVPANVDFLEAQNRHVLYLLRPEKVRDMSVSFGGP NIYLEIEREEERHSRITQKLEHLENRLRHSRYPIERSYLFFEMARCHFKESRFDKCLV IARKAYNEARVCNCLIWRFNSIFLGCQVHAVLNRFERLKESLAKANQLASDLKAPKLV AYIAICISVNNYDLALRQMRQQQDVLVPKFRKRSPISTVTSISSHTTNSSSE" ORIGIN 1 ttggctttgc tccattagtt aaagttcctg ttttcgtgac cccgtttgtg tgtttcttcc 61 ttgccaaatt ctagttggcc aaaattagtg tgttctttga taaattagcc gtaggatcag 121 aatctctacc atgtcctggt cgagtggcct taacaatgcg ggcgtgtgct ccctgctccc 181 ccaactgcgc ccctggcagc ggatcgagtg gcgcccctgc atccagtcgc agatctacag 241 ggactggggc gtctactaca ctcgccgtct gctgaatcac acggccctgg agagtttcgg 301 ccgggcggtg gccgtttgca aggaggagga ggcgcctcgc ttcagtccat ccgcccatgg 361 gggcgtggcc gagccgggcg tttgcctcga ggactacaag tcgctatttc tgcgcggtcg 421 ctgccaccga tcgctggccc gtccggactt ggccctgctg gatgtccagc gggcccagaa 481 ggcgctcagg tcagtgatga agtcatccag cgtttcggag gccgcccata tcatagccga 541 gaagtgcgac aatctcttcg aggccaacga attcgagagc accctgacca cgctgcactc 601 agagggacgc ccctttggcg ggcaattggc ccacgggcgg ttccggttga tcaaggagaa 661 gactctcgac gttttcgagg acaccttggg cgaatcgctg cgtcctttca tgcacgagca 721 cggcggcgtc cttgaggagg tcagccgccg gcagaaggag ctggccgccc acgacccccg 781 gcccctttgg aagacgctgc gagagcggcg gcaatgcgac gtccagagcg tcctcatcaa 841 gcagccggct cagctgaccc cccttgaaaa agcccgtcgg cggtcgagcg aacgtctgta 901 caactacaac tacatgggcc gcagcgccgt ggacattgcg cttttgcggc aactgcgcag 961 cgataagaac ctgctcgatc ccctgcgaat ccagaccacg ccgtccatgc gacagctgag 1021 cgaggagcag tacgcgattg tccggcggtt tatgaaaatg ctgcatgccc ggaatccgct 1081 gtacaaccgg cggtacgtga ggcagcggaa ggggggcgtc tgcgagcagg agcggcgtcg 1141 ccgcagggag atgcacctgt tccacacgca ataccagaca cgtcgcgact gtctgaggat 1201 gttgcacgag gtgcacaggc tgcgcaggga gggcgatgtg gagaggctct ccgactatgt 1261 ggagcacata atgtccggct ttgtggggct gaagacccag cgcacgctgc cctggaagtg 1321 ggagctgctc aacgacatct acaatgccct ggcaatggcc cactgtgacc gctgcgccgt 1381 gcccgccaac gtcgacttcc tggaggccca gaatcggcac gttctgtacc tgttgcggcc 1441 ggagaaggtg cgcgacatga gcgtgagctt cggggggcca aacatctacc tggagatcga 1501 gcgggaggag gagcggcaca gtcgaatcac ccagaagctg gagcatctgg agaatcggct 1561 gcgccactcc cgctacccca tcgagcgatc ctacttgttt ttcgaaatgg cgcgctgcca 1621 cttcaaagag tcgcgattcg acaagtgcct ggtgatagcc cgcaaggcct acaatgaggc 1681 ccgggtctgc aactgcctga tctggcggtt caacagcatc ttcctcggct gtcaggtcca 1741 tgccgttctg aatcgcttcg agaggctgaa ggagtcgctg gccaaggcca atcagttggc 1801 cagcgatctg aaggccccca aactggtggc ctacatagcc atctgcatta gcgtgaacaa 1861 ctacgacttg gccctgcggc agatgcggca gcagcaggat gttttagtgc ccaagttccg 1921 gaaacgaagt cccattagca ccgttacttc gataagctcg catacgacta atagcagttc 1981 ggaataggaa tattatatgc tactgagcca ggggctcttg gctttgaatt cccctggaat 2041 ttttccctgg aatataaagc taagagcttc tgtttttagg ctcctcatag actatcaaat 2101 ttaatgcact tttacctttg tgatttctaa ataaa