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LOCUS XM_017157497 3389 bp mRNA linear INV 09-DEC-2024 2 (Dna2), mRNA. ACCESSION XM_017157497 VERSION XM_017157497.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157497.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3389 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3389 /gene="Dna2" /note="DNA replication helicase/nuclease 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068094" CDS 87..3389 /gene="Dna2" /codon_start=1 /product="DNA replication ATP-dependent helicase/nuclease DNA2" /protein_id="XP_017012986.2" /db_xref="GeneID:108068094" /translation="MATKRVLTPSKSDNGAAPPPANPLKKFKEQLDFAPDELENIDWG DDDEDFALAALGAVEAIGSHRLDLSVWQRCEVLQVEQLAKKSEGLRLHVRRISGGDAE TGVCQLLPPWNHMTLEPGDTVSLLGRWEPAASCHVVDKEQGYCVSQPDFLISGTTVTG SLFCKRKSVLQERFRGLDAGSSVMVIGTLVHELLQKVLLQQLSAKADILSALQEMLRS SSLAHLLYASQLSQPEMEEQLLKFIEPICSFISQYIKGDIPDVLPPEVYRGRIAEIRD IEENLWVPQLGLKGKVDVSVRVRKSKQQEEQIIPLELKTGRASFSMEHKGQLLLYQLM HSAQGRDTQSGLLLYLKEGLLREVPSGRNEQRDLVILRNELAYWLTREMVVPSGKEDP LEQLQLPEPVYHHSACGNCAYNTICSSFASRDESLNLSASHPLKKLMPQLLSHLQEAD HSYVHHWCSLLALEEQHNRLSSQSRYFWTEDPEKRQKQGRAVCHLKLVKNQRVKAEEG RYRQSLELAEEAEAHRDLSLSGFDLGEYVVISSTARLAIASGFIVSLSARRLDLRLER DLGQLYPEETFIMDKHESQSFATFNFTNLGLLLSDGQRFQELREIIVARKQPEQHKVL PKILLTKGAAMLVQLNKVQKTAALRALTTSSHLLIKGLPGTGKTQTLVSLIRLLHLLG KTILITAQTHSAVDNLLLRLLPFDLPMMRLGSSSRIHSQLEGISEERLTRDCKTLEEL EKCLEKPSIVGVTCLGCNHPIFQRRQFDYCIVDEATQVLQPTVLRPLMHCSRFVLVGD PEQLPPIVRSKEARQRGADETLFQRLDSPAATAVLSLQYRMNKTITRLANELTYGGEL KCASEEVSSARFQLELGNPAPRWVQRALLTHLEQAVTLINTGDCQERCQEFVQASQRL VATCSSIEQSYGEDREQENRSKKRVSKYTNYCEAAVVMHLLRQLLKSGYEASGIGVIA PYRAQVELLKKLAARLDSQLECNTVDQFQGRDKNLIIYSCSKTGGEPGDMERSREAEI LEDQRRLTVAITRAKNKLILLGDVRCLEQYGPFRRLFKHIPERCRLTLEEGRMEFTWQ RVQEDLLTLLDT" misc_feature 546..1226 /gene="Dna2" /note="Nuclease domain of the nuclease/helicase DNA2 and related nucleases; Region: DNA2_N-like; cd22318" /db_xref="CDD:411722" misc_feature order(546..554,633..638,645..650,657..659,951..959, 963..965,1020..1022,1026..1034,1077..1079) /gene="Dna2" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:411722" misc_feature 1998..2600 /gene="Dna2" /note="DEXXQ-box helicase domain of DNA2; Region: DEXXQc_DNA2; cd18041" /db_xref="CDD:350799" misc_feature order(1998..2006,2013..2015,2082..2093,2187..2189, 2595..2600) /gene="Dna2" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350799" misc_feature order(2154..2162,2343..2345,2349..2351,2499..2501) /gene="Dna2" /note="nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:350799" misc_feature 2535..3251 /gene="Dna2" /note="AAA domain; Region: AAA_12; pfam13087" /db_xref="CDD:463780" ORIGIN 1 gtctcactaa ttgcgccaaa atatttggag gcaaaactga aaataggaaa tgcttgttta 61 aatagttaaa ttaatgaatt aaaagtatgg ccaccaaacg tgtgctgacg cccagcaagt 121 cggacaatgg cgccgcccct ccgcccgcca atccgctgaa gaagttcaag gagcagctgg 181 atttcgcgcc ggacgaactg gagaacatcg attggggcga cgacgacgag gacttcgctt 241 tggcggccct tggagctgtg gaggcgatag gaagccaccg gctggatctc agcgtttggc 301 agcgatgcga ggtgctgcag gtggagcagc tggccaagaa gtccgagggt ctgcgactgc 361 atgtgcgtcg gatttctggc ggggatgcgg aaaccggagt ttgccaactg cttccgccct 421 ggaatcacat gaccctggag cccggcgaca ctgtcagcct gctgggcagg tgggaacccg 481 ccgcctcctg ccatgtggtg gacaaggagc agggctactg cgtctcccag ccggatttcc 541 tcatttccgg caccacagtc accggttcgc tcttctgcaa gcgcaaatcc gtcctccagg 601 agcgtttccg cggcctggat gcgggcagct cggtgatggt aattggcacc ctggttcatg 661 agttgctgca aaaggtgctc cttcagcagc tctccgccaa ggcggacatc ctttctgccc 721 tccaggagat gctgcgtagc tcctcgctgg cccacctgct ctatgccagc cagctcagcc 781 agccggaaat ggaggagcag ctgctgaaat tcattgaacc catttgcagt ttcatttcgc 841 agtacattaa aggtgatatt ccggatgttc ttcctccaga agtctatcgt ggtcgcatcg 901 cggagatccg ggacatcgag gagaacctct gggtgccgca gctggggctc aagggcaagg 961 tggatgtgtc tgtgagggtg aggaaatcga agcaacagga ggagcaaatc attccgctgg 1021 aactgaagac agggcgagcc agcttctcca tggagcacaa gggccagttg ctgctctacc 1081 agctgatgca ctccgcccag ggacgcgaca cccagtcggg attgctgctg tacctcaaag 1141 agggcctgct gcgcgaggtg cccagcgggc ggaatgagca gcgggatctg gttatcctcc 1201 gcaatgagtt ggcttactgg ttgaccaggg aaatggtcgt tccttccggc aaagaggatc 1261 ccctggagca actgcagctg ccggaacccg tttaccatca cagcgcctgc ggaaactgcg 1321 cctacaacac catctgctct agttttgcta gcagagatga gagtttaaac ctcagcgcct 1381 cgcatccgct gaagaaactg atgccgcagc tattaagcca cctccaagag gcagatcact 1441 cctatgtgca tcactggtgc agccttttgg ccctggagga gcagcacaat cgcctgtcct 1501 cgcaatcgcg ctacttttgg accgaggatc cagagaagcg gcaaaaacag ggcagagccg 1561 tttgccactt gaagctggtg aagaatcagc gggtcaaagc agaggaggga cgctatcgcc 1621 agagcctgga gctcgctgaa gaggcagagg ctcaccggga tctcagtttg agtgggtttg 1681 acctgggtga atatgtggtc atcagttcga ctgcccgcct ggccatcgcc tctggtttta 1741 tcgtctccct gtcagcccgt cgcctggatc tgcgtttgga gcgcgatctt ggccagcttt 1801 accccgagga aaccttcata atggacaagc acgagtcgca gagctttgcc accttcaatt 1861 tcaccaatct cgggctgctg ctctcagatg gccagcgctt ccaggagctg cgcgagatta 1921 tagtggcccg gaagcagccg gagcagcaca aggtgctgcc caagatcctc ctgaccaaag 1981 gagcagcgat gctggtgcag ctgaacaagg tacagaagac agcagccctg cgcgccttga 2041 ccaccagcag tcatctgttg atcaagggtc ttccgggcac tgggaaaacc cagaccttgg 2101 tttccctcat ccgattgctt catctcctcg ggaaaaccat cctgattacg gcccaaaccc 2161 actcggcagt ggacaatctg ctcctgcgac tgctgccctt cgatttgccc atgatgcgtt 2221 tgggttctag ctccagaatt cacagccaac tggaggggat tagcgaggag cggctgacga 2281 gggactgtaa aaccctggag gagctggaaa agtgcctgga gaagccctcc attgtgggcg 2341 ttacctgttt gggctgcaat catcccatct ttcagcgccg ccagttcgac tattgcatcg 2401 tggacgaggc cacgcaggtg ctgcagccca ctgtgctgcg tccactgatg cactgcagcc 2461 gcttcgtgct cgtcggcgat cccgagcagc tgccgccgat tgtccgctcc aaggaggcgc 2521 gtcagagggg cgccgatgag acgctcttcc agagattgga ctcgcccgcg gccaccgctg 2581 tgctgagcct gcagtatcgc atgaacaaga cgatcacccg gctggccaat gagcttacgt 2641 acggagggga gcttaaatgc gcatccgagg aggtctcctc agcccgcttt caactggaac 2701 tgggcaatcc agcaccccgt tgggtgcagc gtgccctgct aacccatttg gagcaggcgg 2761 tgaccctgat aaatacggga gattgccaag aacgctgcca ggaattcgtg caggcatccc 2821 agcgactggt ggccacctgc tcctccatag agcagagcta cggcgaggat agggagcagg 2881 aaaatagaag taaaaagcgc gtttccaagt acacaaacta ctgcgaggcg gcggtggtga 2941 tgcacttgct caggcagttg ctaaagtcgg gctatgaggc ctccgggatc ggcgtgatag 3001 ctccctaccg ggcgcaggtg gagctgctca agaagctggc cgcccggctg gacagccaac 3061 tggagtgcaa cactgtggat cagttccagg gtcgcgacaa gaacctaatc atatatagtt 3121 gctccaaaac aggcggtgaa cctggtgata tggaacgatc ccgcgaggcg gagatcctgg 3181 aggatcagcg acgcctcaca gtggccatta cgcgagccaa gaacaagctc atcctgctgg 3241 gcgatgttcg gtgcctggag caatacggac ccttccggcg gctcttcaag cacatcccgg 3301 agcggtgtcg cctcacgttg gaggagggcc gcatggagtt cacctggcag cgggtccaag 3361 aggatctatt gacgctgctg gacacctag