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LOCUS XM_017157473 5381 bp mRNA linear INV 09-DEC-2024 (LOC108068075), transcript variant X2, mRNA. ACCESSION XM_017157473 VERSION XM_017157473.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157473.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5381 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5381 /gene="LOC108068075" /note="uncharacterized LOC108068075; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108068075" CDS 766..4377 /gene="LOC108068075" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_017012962.2" /db_xref="GeneID:108068075" /translation="MASLTLHLIVIALLASTALSKAATPTPTTTTPTTSTTTTTVTRQ RGRGVAFQGEGLRLGGVASVSASTTSTEAPTLRAPRQRRPPTTKSIDITVTVTPIRSR GRSGSAATPLPPVSTTTTAAARLLQRRRSSTSSTTTTTGATPAAGRSSRDRGSVRGPR QPRDTPDSSIRRSWQSAQAPTATPYHAQTPTFSSSGSSSSTSSGGTTSSRGALKTPRM IQRLVAGHIHNAQGHSTYEVSAVSANSSSSSYNPSTSASWSSTSTSSSTSSTSSTTTT TRQPPLKSKASSSYRLAKPSIRPRLSSTVAPSRFSNPPSTSRSTTPLPPTSSNTPNPF KDDDNDDEALLNEPDDFDDNWDNGILRLSAGSGKEAEAPAKKAPGGAKEDQKKTLADQ VRDGKYGLIERELFRRVPKRPGVLSYARNSEVPLDNERNYGGLNEEDIWLAEDHLLVI KGGSLNEETDDNQPGGGGLPWPAIDDYDAPGRQIKLPANPAVPPPFPVQLEPHGPLQL IRDNQLEILRPAAGNATLSGMVNHQSDQGAGAGEDLASHPVARTGATAAATSAKSKEA KESPSYVYPAPYAPWLLYPANETTSKGGLLRSPPLLGPWLINGLNGLNASLVSGGDSQ TNLSDFDEDDPSLYYPPAYTFVYKSNYSNPVPPGPLVPGIVLPPPPDHFSRLEGSSTR KPPTSTTSTSSTTSSTTTTTTTTSTTRPPLPIRTSYKPKYNGITYLPPHPRQKQYVER VPVPVAVPIPIYPVNYTPRPQLVFVPSSTEEPGSGSGSRDPPLSKSNPIYYEYFEAKR QPGSIKSNVIDDFLATKPPKRHHHGQSNQIYGHHHHQREHLQHYKASPSPANDVATAA EVVNITPKPRTAQLQLHAEYEASLGQLLRSNLISPQEAGGGVAVGAHPGRFQAPDFDK QPFLPMVNYSADEQDQNAFKAIVYQPNPNPSLNPNPVQRQRHLRVGKQQLQLEPSNLE ASPPQDSYLPGRHFRVGKQQHQQQQQQIYEPQVYSTPIPQFVDDPQQLRPPSPVQSNP LQFWQRPPPQFKRVRPSSKQGHPHVHPHYPPYYVPGYPSAPAGEPLYRLVPVAQHKHW RNKQTQQQQVQSQPIQVQAQHHNQNHNQGYPDRSVNIGHSLAGDILVNYNTNNQFNPQ AELVPQAQLAAPPPPPPPLSYQAQSGQPLWSERERREGDRERDRDRERSVRQSREQQ" misc_feature 943..>1338 /gene="LOC108068075" /note="BDLF3; Provisional; Region: PHA03255" /db_xref="CDD:165513" ORIGIN 1 tggctccccg acttccagcg atcagtcgca attcaaagtg cgcgctgtgc ggagccattt 61 aaatcgctca accgttttcc cccacggttc caggcggttc ttttcgaaac caactgaaac 121 cgaaaacata acaaatggcc cattcggaag ttatcattaa atatatcgag taacacacga 181 ctaacgatac tgggcatgcg cactgccttt aaatgtgatt tttatcagcg ataaagctgt 241 gatttttttt gggtttactt cgccgatcga tcgataatga taaaagggaa aaaacaaggt 301 gcatccagtt agtgaaacaa gccataaatt agcaaaagtt cgttgattga cggtcagaac 361 gccgcgtcat gttgttgctg ccaacggaaa tatgtccagc agcaacagca acaataacaa 421 cagcaacagc agcagcaaca acaaccataa acaacaccaa aagttgccca acgaaaagta 481 atttgcgaaa atcataaaaa agtagcgtaa ataactcccg gctctacgag atccaagtgg 541 agcaaaactc aaaactcaaa acgcaaagag cgaaaagcac aaaggccaag cgcaaaaata 601 gccagaaaat tgctggaaat cttttggttc acaccaaaac aagaaacccc agaaataaga 661 acaatattca agaacaacca gagcaacaac agcaaaacag caaacagcaa gtgtcgccgt 721 tttcttaggc acaaaaacca ttctgtgata tctcaagacc caaagatggc atcgttaacc 781 ttgcacttga tagtgatagc tctgctggcg tcgactgcgc tgtcaaaggc ggcgacacca 841 acaccaacaa caaccacacc aacaacatct acaacaacaa caacagtgac gcgacagcgc 901 ggcagaggcg tcgccttcca gggggagggg ctgcggctgg ggggcgtggc atctgtatct 961 gcatccacaa ccagcacaga ggcgccaacg ttgcgggcac cgcgtcagcg tcgtccgccc 1021 acgacgaaat cgatcgatat aacggtgacg gtgaccccga ttcgcagtcg cggtcgcagt 1081 ggcagcgcag cgacgcctct gccgccggtc agcacaacaa caactgctgc tgctaggctg 1141 ctgcagcgac gtcgcagcag cacttccagt acaacaacaa caacaggagc aactccagca 1201 gctggaagat cttccaggga tcgtggaagt gtgagggggc cacgacaacc gcgcgatacg 1261 cccgattcga gcattcgacg gagttggcag tccgcccaag cgcccaccgc caccccctac 1321 cacgcccaaa cacccacttt cagttccagt ggcagttcca gttccacttc cagtggcggt 1381 accacttcca gtcgaggcgc actgaaaacg ccgcgaatga tccagcgcct ggtggccggt 1441 cacatccaca atgcccaggg acactccacc tacgaggtgt cggcggtcag tgccaacagc 1501 tcctcgtcta gttataatcc ttcgacgagt gccagttgga gttccacttc cacttccagt 1561 tccacttcct ccacttcctc cacgacgacg acgacgaggc agccgccttt gaagagcaag 1621 gcgagcagca gctaccgact ggccaaaccc tcgatcaggc cgagattgag cagcacagtg 1681 gcccccagtc gcttcagtaa tccgcccagt acctcgagat ccaccactcc cctgccgccg 1741 acgagttcca ataccccgaa tccttttaag gacgacgaca acgatgatga ggcgctgctg 1801 aacgaaccgg atgacttcga cgacaactgg gacaatggga tcctgcggct gagcgccggt 1861 tcgggcaagg aggcggaggc gccggccaag aaggccccag gaggagccaa ggaggaccag 1921 aagaagacgc tggccgacca ggtgagggac ggcaagtatg gactgatcga aagggagctc 1981 ttccgtcgcg ttcccaagcg tccgggagtg ctgagctatg cccgcaactc ggaggttccg 2041 ctggacaatg agcgcaacta tggaggcctc aacgaggagg acatctggct ggccgaggat 2101 cacctgctgg tgatcaaggg tggctccctc aacgaggaga ccgatgacaa tcagccgggg 2161 ggtggtggcc tgccctggcc ggccatcgat gactacgatg cgccgggaag gcagatcaag 2221 ttgccagcca atccagctgt gccgcctcca tttcccgtgc agctcgagcc gcatgggccg 2281 ctgcagctta tccgagataa tcaactcgag atcctccgtc cggcggctgg caatgcaacg 2341 ctatccggga tggtcaacca ccagagcgac cagggcgccg gcgccggcga agatctcgca 2401 tcgcatcctg ttgcccggac gggagcgact gcagcagcta cgtcggctaa gtccaaggag 2461 gccaaggaat ccccctccta tgtttatccc gcgccctatg ccccctggct gctctacccc 2521 gccaacgaga cgacgtccaa aggcgggttg ctgagatcgc cgccgctttt gggaccctgg 2581 ctgatcaacg ggctgaatgg cttgaatgcc tctctagttt ctggcgggga ttcccaaacg 2641 aatctgagcg atttcgacga ggacgatccc tcactctact atccaccagc ctacacgttt 2701 gtctacaagt ccaactactc gaatccggtg ccaccgggtc ccttggtgcc cggcatagtc 2761 ctgccaccgc cgccggatca cttcagtcga ctggagggca gcagcaccag gaaaccaccc 2821 acaagcacta cttctacaag tagtactact tctagcacta ctactactac tactactacc 2881 agtaccacac gaccaccgct gcccattcgc acctcgtaca agcccaagta caatgggatc 2941 acctatctgc cgccgcatcc gaggcagaaa cagtatgtgg agcgagtgcc cgttccggtg 3001 gcagtgccca tacccattta ccccgtcaac tatacgccgc gtccccagct ggtctttgtg 3061 cccagctcca cggaggaacc gggatcgggt tcgggatctc gagatccccc gctctccaag 3121 tcgaacccca tctactacga gtacttcgag gccaagcggc agccgggctc catcaagtcc 3181 aacgtcatcg acgacttcct ggccaccaag ccgcccaagc ggcatcatca tggccagagt 3241 aaccagatat atggccacca tcaccatcag cgggagcatc tgcagcacta caaggcgtcg 3301 ccgagtccgg caaacgatgt ggccaccgcc gccgaggtgg tcaacatcac gcccaagccc 3361 aggaccgccc agctgcagct gcacgcggag tacgaggcgt ccctgggcca gctgctcagg 3421 agcaacctca tctcgcccca ggaagcagga ggaggagtgg cagtcggagc ccatccgggg 3481 cgattccagg cccccgactt tgacaagcag cccttcctgc ccatggtgaa ctacagtgcg 3541 gacgagcagg accagaacgc cttcaaggcc atcgtttacc agcccaatcc caatcccagt 3601 ctgaatccca atcccgtcca gcggcagcgt cacctgcgtg ttggcaagca gcagctgcag 3661 ctggagccca gcaacttgga ggcctctccg ccgcaggact cctatctgcc gggtcgccac 3721 ttccgggtgg gcaagcagca gcaccagcag cagcagcagc agatctacga gccgcaggtc 3781 tacagcaccc caattcccca gtttgtggac gatccgcagc aactaaggcc cccatctccg 3841 gtccaatcga atcctttgca gttctggcag cgacctccgc cgcagtttaa aagggtgcga 3901 cccagcagca agcagggtca ccctcatgtc catccccatt atccgccgta ctatgtgccc 3961 ggctatccca gtgctccggc gggggaaccc ctgtaccgcc tggtgcccgt ggcccagcac 4021 aagcactgga ggaacaagca gacgcagcag cagcaggtgc aatcgcagcc catccaggtg 4081 caggcccagc atcacaatca gaatcacaac cagggttatc ccgatcggag cgttaatatt 4141 ggacacagtc tcgccggcga catcctcgtc aactacaaca ccaacaatca gttcaatccg 4201 caggcggaac tggtgcccca ggcccagttg gccgcccccc ctccgccgcc gccgccgctg 4261 tcctatcagg cccaaagtgg ccagcccctg tggtccgaaa gggagaggag ggagggagat 4321 cgggagcggg atcgggatcg ggagcgatcg gtgagacagt ccagggaaca gcagtagtac 4381 ttatatatct taaaaatccg agtaatcatg tcgataatga tggtttctat gtcattgata 4441 aacgtagtgt caaaatgtga tctataggga ggccaatccg caattctttt tcattcaata 4501 ccatttcata tcattcacaa ccaatcccga ttatggtctc attttcgtat ttgaacattt 4561 ttatttttat aacccgaaat attcctctcg aaatcgctga aaaattgaat tcttcaaaat 4621 gatttctttt attcgataaa atcatcattt taatgggtgt tttgtgggcg tttcttcttt 4681 gccgcttcca tttcgacttt tatttaagct cccagtttat ttcgcgttct ttgctaccac 4741 taacaaatag ttacgttacg tagagctggt catttaagag ataaaccccg atttggtcct 4801 gctgtgctgc caacgtctcg atggcgatcg acaatcgata catatcgcca atcgctgaca 4861 gagttgcaac aagcaaatac acatacatat atatttatac catatataag tgtagctata 4921 tccctatgcg gtaataatat atattcacaa acctatgtaa ataaaaaacg agtgtaggcg 4981 ctaccgacac cacttagtcc taggggcagt aaaatatgtg catcaatgta tgtatacttt 5041 atcgataccg ttaccgatgt cgatatcgaa cgaaggatcc ttcgcttagc cgtagctatc 5101 tgttttatcc tgcacacaca ctatatgtat tatttttttc tatttattgt aatctgtttt 5161 tgaatgtttt ccaaaatcat tgcaaaactt tgtataaaag ccataacaac taaggtcact 5221 ataagttaaa atcacgctat tcagctaatg aaaactacgc gttaattata cctttagttt 5281 gtataccgtg cataaaaata tacctatatt tttttttgtt aattgtaaac gaataaaata 5341 atttgtagac gcaaattctt attatcgaaa taaagcaaat t