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LOCUS XM_017157458 2657 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017157458 VERSION XM_017157458.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157458.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2657 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2657 /gene="RhoU" /note="RhoU; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108068065" CDS 482..2206 /gene="RhoU" /codon_start=1 /product="uncharacterized protein RhoU" /protein_id="XP_017012947.3" /db_xref="GeneID:108068065" /translation="MTVKLAKLFGSGVEVLDQQQQQQEQHIQQQQQQPLVAQQQQPPP LPPPNANMKSLKYYEHLQATYDCHLMDHDQDQDQDQDDYEDTCMQRNHPYNNSQRPLL GDRRPQLTVMSVVKKGGGGGGGKAGVPLPPLPPLRSYISPYVQQQKRDSAKGLHGFND FDALSQQYNQHLQSSPHIGYPYGSPPSPTAQSSDFCFDRQTTGLVRGTSASVGNQHQV ISSSSSNCSSSHTTSTSSPTRYYPDNSGNIASLYPSRFEDDFCMRRPVVQLDGSPGGG GGVGVAGGPFIFGIAPEEQLTDYGSNPLPPTPPQLKQQQSVISRSPLQQSLSDTSAAS SGKGSKFLLRKRKSKKTTAAAATTTTTAAAEAATTAKKGGKKDAAPSQPSIKCVLVGD GAVGKTNLILSYLENRFNTEHIPTASDIYNADVNVNESPVHLTICDTAGQDTLDPLRE LCYPDSDVFLLCFSVVKPETFRAIKAKWAPKFAKTKAALILVGTQADLRTSPNVLNKL QTNGEKAISYADAWDLATTIGAKYIETSSATQDKVKDVFDTAIWEGLVPTTLPPTPSF WRKLFCLA" misc_feature 1634..2143 /gene="RhoU" /note="Wnt-1 responsive Cdc42 homolog (Wrch-1) is a Rho family GTPase similar to Cdc42; Region: Wrch_1; cd04130" /db_xref="CDD:133330" misc_feature order(1637..1639,1727..1732,1736..1741,1745..1747, 1751..1753,1778..1780,1790..1795,1799..1807,1823..1825, 1832..1834) /gene="RhoU" /note="putative GEF (guanine nucleotide exchange factor) interaction site [polypeptide binding]; other site" /db_xref="CDD:133330" misc_feature 1652..1675 /gene="RhoU" /note="G1 box; other site" /db_xref="CDD:133330" misc_feature order(1661..1678,1793..1798,1802..1804,1964..1966, 1970..1972,2090..2095) /gene="RhoU" /note="GTP/Mg2+ binding site [chemical binding]; other site" /db_xref="CDD:133330" misc_feature 1724..1744 /gene="RhoU" /note="Switch I region; other site" /db_xref="CDD:133330" misc_feature 1727..1729 /gene="RhoU" /note="G2 box; other site" /db_xref="CDD:133330" misc_feature order(1730..1732,1799..1801,1823..1825,1829..1831) /gene="RhoU" /note="putative GDI (guanine nucleotide dissociation inhibitor) interaction [active]" /db_xref="CDD:133330" misc_feature order(1730..1735,1805..1807,1823..1825) /gene="RhoU" /note="putative GAP (GTPase-activating protein) interaction site [polypeptide binding]; other site" /db_xref="CDD:133330" misc_feature order(1733..1738,1823..1825,1832..1834) /gene="RhoU" /note="putative effector interaction site [active]" /db_xref="CDD:133330" misc_feature 1793..1804 /gene="RhoU" /note="G3 box; other site" /db_xref="CDD:133330" misc_feature order(1802..1807,1823..1834,1847..1855) /gene="RhoU" /note="Switch II region; other site" /db_xref="CDD:133330" misc_feature 1961..1972 /gene="RhoU" /note="G4 box; other site" /db_xref="CDD:133330" misc_feature 2087..2095 /gene="RhoU" /note="G5 box; other site" /db_xref="CDD:133330" ORIGIN 1 tgtatcttgt tttcgatcgt cgattctcgt ttgcggttgc ctcgtttttc gctccgcttc 61 gttgttgttt ttgttatccg tcggtttctt ttagcggagt ttgttttcgg ttttcgatta 121 agttctgttt tcgctttttt tttctgtgcc ccgagttgca cgcaggcgca acagcaaaat 181 aagaggagaa acagcgaaaa tcgttgttgc aagtggctgc gttctccgac gtcgacggcg 241 cagcggcgca ggcgcaacag cagcggaaca acgaatcaaa tggaattgga tttcgcctca 301 acgaacaatt aattggaatt acatttcaac tggaagtgag ttgccttaat ttggaggaag 361 gaaaattgaa ttggctacac aaactggtgg aaacttttcc ccacagcaac tgtcattgtc 421 ttttggcatt gggcaacatt ttaattgaaa aagtttctgg cgagagcagc gaagagaaga 481 gatgactgtg aaattggcca agctgtttgg gtctggagtc gaggtcctgg accagcagca 541 gcagcaacag gagcaacata tccagcagca acagcaacaa ccgctggtag cacagcagca 601 gcaaccgccg cctctgccgc ctccaaatgc gaatatgaag agcctcaagt attacgagca 661 tctgcaggcc acctacgact gccatctgat ggatcacgac caggatcagg atcaggatca 721 ggacgactac gaggacacct gcatgcagcg caatcatccg tacaacaatt cacagcgacc 781 cctgctgggg gatcggcgac cccagctgac ggtgatgagt gtggtgaaaa aggggggtgg 841 tggcggcggt ggcaaggcgg gggtgccact gccccctctg ccgcccctga ggagctacat 901 ctcaccctat gtgcagcaac agaagcggga cagtgccaag gggctgcacg ggttcaacga 961 tttcgatgcc ctttcgcagc agtataatca gcatttgcag agcagtccgc acatcggcta 1021 tccctacggc agtcccccct cgccgacggc tcagtcgagt gacttctgct tcgatcgaca 1081 gacgacggga ttggtcaggg gaacctccgc ctcggtgggc aatcagcatc aggtcatctc 1141 gagcagctcg agcaactgca gcagctcgca caccacatcc acctcctcgc ccacccgtta 1201 ttatccggat aattcgggga atatcgccag cctgtatcct agccgtttcg aggatgattt 1261 ttgcatgcgt cgtcctgtcg tccagttgga tgggtcgcca ggaggaggag gtggagtggg 1321 agtagcaggt ggacccttca tctttggcat tgccccggag gaacagttga cggactatgg 1381 aagcaatcca ctgccaccga cgccgccgca gctgaagcaa caacaatctg tgattagccg 1441 aagtcccttg caacaatcgc tgagcgacac aagtgccgcc agtagtggca agggctccaa 1501 attcttactg cgtaagcgta aatcaaagaa gacaaccgca gcagccgcaa caacaacaac 1561 aacggcagca gctgaggccg caacaacggc caaaaagggt ggcaaaaagg atgctgcccc 1621 ctcacagccg tcgatcaagt gcgttttggt gggtgacggg gccgtgggca agacgaatct 1681 gatcctgtcg tatctggaga accgcttcaa cacggagcac atacccacgg cctcggacat 1741 ttacaatgcc gatgtgaatg tgaacgagag tccggtgcac ctgaccattt gtgataccgc 1801 cggccaggac accctggatc cgctgaggga gctctgctat ccggacagcg acgtcttcct 1861 gctctgcttc tcggtggtga agccggaaac gtttcgggcc atcaaggcca aatgggcgcc 1921 caagtttgcc aagaccaagg ccgccctgat tttggttggc acccaggccg atcttcgcac 1981 cagcccgaat gtcctcaaca aactgcagac aaatggcgag aaagcaattt catatgcaga 2041 cgcctgggat ttggcaacaa caattggcgc aaaatacatt gagacttcgt cagccacaca 2101 ggacaaagtc aaggatgtgt tcgacacagc catttgggag ggcctcgtgc ccaccaccct 2161 gccgcccacg ccctccttct ggaggaagct cttctgcctg gcctgaaact cgaaactgaa 2221 gatcaaccca actctcaaca cacactcgat ttattataat ttttattttt tttggatata 2281 taaccattat ttatattaaa gatttttttt agagattttc gtttagcagt gcttgcacac 2341 agactgatct acacataaac taaagtaaca tatacattta gattttaaac aagaaaatta 2401 taatgcttaa tgcctaatcg tatagatttc atcactttac tcgtaaacat gttcgtggtt 2461 ttctctcatc gccttctttt ttgttttatt ataaaaccta aactatttaa gccttattat 2521 cgcccagatc cacaactatg ttacatcatt ccatccattt ttaagcatta cgttttaagc 2581 aaatatttca aatattgtat atcgaaggca gcagtaaata tagtagcaaa acaaatccac 2641 caattctgga ttgaatt