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LOCUS XM_017157435 1961 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017157435 VERSION XM_017157435.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157435.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1961 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1961 /gene="LysRS" /note="Lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108068056" CDS 128..1855 /gene="LysRS" /codon_start=1 /product="lysine--tRNA ligase isoform X2" /protein_id="XP_017012924.2" /db_xref="GeneID:108068056" /translation="MAAASGELSKNELKRRLKAEQKAKEKAEKAAAAAPATEGAAGKK KSSAEEEEISPNEYFKLRSAAVQELKRSPTTDPYPHKFHVSSSLEDFIAKYESSLKEG ETLENVQLSVAGRVHAIRESGAKLIFYDLRGEGVKVQVMASAKSYKSEAEFETDTAKL RRGDIIGVVGHPGKTKKGELSVMPSEIKLLSPCLHMLPHLHFGLKDKETRYRQRYLDL ILNNKVRENFQIRAKIISYVRQFLDRLGFLEIETPMMNMIAGGATAKPFVTHHNDLKM DLFMRIAPELYHKMLVVGGLDRVYEIGRQFRNEGIDLTHNPEFTTCEFYMAYADYADI MDITEQLVAGMVKAIRGSYKVIYHPEGPEGPEQELDFTPPFKRVSMIKTLEEKLQVKF PAADTFNTPETNQFLSQLCTKHQVECPAPRTTARLLDKLVGEFIEEFCINPTFICEHP QIMSPLAKYHRSTPGLTERFELFVAKKEICNAYTELNDPVVQRERFEQQASDKAAGDD EAQLVDENFCTALEYGLPPTGGFGMGIDRLAMFLTDSNNIKEVLLFPAMKPEEANRTA AETAPATQQ" misc_feature 128..1810 /gene="LysRS" /note="lysyl-tRNA synthetase; Region: PLN02502" /db_xref="CDD:215278" misc_feature 884..898 /gene="LysRS" /note="motif 1; other site" /db_xref="CDD:238398" misc_feature order(980..982,1046..1048,1052..1054,1070..1072, 1082..1084,1538..1540,1559..1561,1568..1570,1580..1582, 1736..1738) /gene="LysRS" /note="active site" /db_xref="CDD:238398" misc_feature 1043..1054 /gene="LysRS" /note="motif 2; other site" /db_xref="CDD:238398" misc_feature 1727..1738 /gene="LysRS" /note="motif 3; other site" /db_xref="CDD:238398" polyA_site 1961 /gene="LysRS" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 catttgaatt cagcgcgtct ggcagccctg gttgtgtact ttatttttac atttgtggcg 61 cttcacattt gcgccgcttt tcgagaattc cggcttaacc aggcgagcaa cgtagaccgg 121 caacagcatg gccgctgcaa gtggagaact gtccaagaat gagctgaagc gccgcctgaa 181 ggccgagcaa aaggccaagg aaaaggcgga aaaggcagcc gccgctgctc ctgcgaccga 241 aggagctgct ggcaagaaga agagcagcgc agaggaggag gaaatctccc ccaacgaata 301 cttcaagctc cgctccgccg ccgtccagga gctgaagcgt tcacccacca ccgatcccta 361 tcctcacaag ttccatgtga gcagttcact agaggacttc atcgcgaagt acgagagcag 421 cttgaaggaa ggcgaaaccc tggagaatgt ccaactaagc gtggcgggac gtgtccatgc 481 catccgcgag tcgggcgcca agctcatctt ctacgatctg cgcggcgagg gcgtcaaggt 541 gcaggtgatg gctagcgcca agtcctacaa gtcggaggcg gaattcgaga ctgacacggc 601 caaactgagg cgaggcgata tcatcggcgt cgtcggacat cccggcaaga ccaagaaggg 661 tgaactctcc gtgatgccca gcgagatcaa gctgctgtcg ccctgccttc acatgctgcc 721 ccatctgcat ttcgggctca aggacaagga gacgcgctac cgccagcgct acctggatct 781 catcctcaac aacaaagtgc gcgagaactt ccagattcgc gccaagatca tctcctacgt 841 tcgccagttc ctcgatcgcc tcggcttcct ggagatcgag acgcccatga tgaacatgat 901 cgccggcgga gccactgcca agcccttcgt aacccatcac aacgacctca agatggacct 961 gttcatgcgc atcgctccgg agctctacca caagatgctg gtggtcggcg ggctcgaccg 1021 cgtctacgag atcggtcggc agttccgcaa cgagggcatc gacctcaccc acaatcccga 1081 attcaccact tgcgagttct acatggcgta tgccgattac gccgacatta tggacatcac 1141 cgagcagttg gtcgcgggca tggtgaaggc catccgcgga tcctacaagg tcatctatca 1201 cccagagggt cccgagggac ccgagcaaga acttgacttt acgccaccct ttaagcgggt 1261 gtccatgatc aaaacgctgg aggagaagct gcaggtcaag ttcccggctg ccgatacctt 1321 caatacgccc gagacgaatc agttcctctc gcagctatgc accaaacacc aggtcgagtg 1381 ccccgcgccg cggaccaccg cccgtttgct ggacaagctg gtgggcgagt ttatcgagga 1441 gttctgcatc aatccgacgt tcatctgcga gcatccgcag attatgtcgc cgctggccaa 1501 gtaccatcgc agcacgcccg gcctgacgga gcgcttcgag ctgttcgtgg ccaagaagga 1561 aatctgcaac gcgtacaccg agctgaacga tcccgtcgtg cagcgcgaac gcttcgagca 1621 gcaggccagc gataaggcgg ctggggatga cgaggcccag ctggtcgacg agaacttctg 1681 cacggccctg gagtacggtc ttccgcccac cggcggtttc ggcatgggca tcgatcggct 1741 ggccatgttc ctcacggact ccaataacat caaggaggtt cttctcttcc ccgccatgaa 1801 gccggaggag gccaaccgca cggcggcgga aactgctccg gccactcagc agtagagggc 1861 caccgctcac ccactcaacc ccaatccttg tacgttacgc tggtcccggg ctagacccag 1921 ttgctaagtt attcgacaaa taaacctttc ctttccaata a