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LOCUS XM_017157434 1935 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017157434 VERSION XM_017157434.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157434.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1935 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1935 /gene="LysRS" /note="Lysyl-tRNA synthetase; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108068056" CDS 3..1829 /gene="LysRS" /codon_start=1 /product="lysine--tRNA ligase isoform X1" /protein_id="XP_017012923.2" /db_xref="GeneID:108068056" /translation="MFARCALKTVQEAWPMVKSTRIWSQTRGFHVSGSQLQPSKQTKL ELKRRLKAEQKAKEKAEKAAAAAPATEGAAGKKKSSAEEEEISPNEYFKLRSAAVQEL KRSPTTDPYPHKFHVSSSLEDFIAKYESSLKEGETLENVQLSVAGRVHAIRESGAKLI FYDLRGEGVKVQVMASAKSYKSEAEFETDTAKLRRGDIIGVVGHPGKTKKGELSVMPS EIKLLSPCLHMLPHLHFGLKDKETRYRQRYLDLILNNKVRENFQIRAKIISYVRQFLD RLGFLEIETPMMNMIAGGATAKPFVTHHNDLKMDLFMRIAPELYHKMLVVGGLDRVYE IGRQFRNEGIDLTHNPEFTTCEFYMAYADYADIMDITEQLVAGMVKAIRGSYKVIYHP EGPEGPEQELDFTPPFKRVSMIKTLEEKLQVKFPAADTFNTPETNQFLSQLCTKHQVE CPAPRTTARLLDKLVGEFIEEFCINPTFICEHPQIMSPLAKYHRSTPGLTERFELFVA KKEICNAYTELNDPVVQRERFEQQASDKAAGDDEAQLVDENFCTALEYGLPPTGGFGM GIDRLAMFLTDSNNIKEVLLFPAMKPEEANRTAAETAPATQQ" misc_feature 225..1784 /gene="LysRS" /note="lysyl-tRNA synthetase; Region: PLN02502" /db_xref="CDD:215278" misc_feature 858..872 /gene="LysRS" /note="motif 1; other site" /db_xref="CDD:238398" misc_feature order(954..956,1020..1022,1026..1028,1044..1046, 1056..1058,1512..1514,1533..1535,1542..1544,1554..1556, 1710..1712) /gene="LysRS" /note="active site" /db_xref="CDD:238398" misc_feature 1017..1028 /gene="LysRS" /note="motif 2; other site" /db_xref="CDD:238398" misc_feature 1701..1712 /gene="LysRS" /note="motif 3; other site" /db_xref="CDD:238398" polyA_site 1935 /gene="LysRS" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ttatgtttgc ccgctgcgcc cttaaaaccg tgcaggaggc gtggccaatg gtcaagtcga 61 cacggatttg gtcacagacc agaggtttcc acgtgagcgg cagccaactg cagccgagca 121 agcagaccaa acttgagctg aagcgccgcc tgaaggccga gcaaaaggcc aaggaaaagg 181 cggaaaaggc agccgccgct gctcctgcga ccgaaggagc tgctggcaag aagaagagca 241 gcgcagagga ggaggaaatc tcccccaacg aatacttcaa gctccgctcc gccgccgtcc 301 aggagctgaa gcgttcaccc accaccgatc cctatcctca caagttccat gtgagcagtt 361 cactagagga cttcatcgcg aagtacgaga gcagcttgaa ggaaggcgaa accctggaga 421 atgtccaact aagcgtggcg ggacgtgtcc atgccatccg cgagtcgggc gccaagctca 481 tcttctacga tctgcgcggc gagggcgtca aggtgcaggt gatggctagc gccaagtcct 541 acaagtcgga ggcggaattc gagactgaca cggccaaact gaggcgaggc gatatcatcg 601 gcgtcgtcgg acatcccggc aagaccaaga agggtgaact ctccgtgatg cccagcgaga 661 tcaagctgct gtcgccctgc cttcacatgc tgccccatct gcatttcggg ctcaaggaca 721 aggagacgcg ctaccgccag cgctacctgg atctcatcct caacaacaaa gtgcgcgaga 781 acttccagat tcgcgccaag atcatctcct acgttcgcca gttcctcgat cgcctcggct 841 tcctggagat cgagacgccc atgatgaaca tgatcgccgg cggagccact gccaagccct 901 tcgtaaccca tcacaacgac ctcaagatgg acctgttcat gcgcatcgct ccggagctct 961 accacaagat gctggtggtc ggcgggctcg accgcgtcta cgagatcggt cggcagttcc 1021 gcaacgaggg catcgacctc acccacaatc ccgaattcac cacttgcgag ttctacatgg 1081 cgtatgccga ttacgccgac attatggaca tcaccgagca gttggtcgcg ggcatggtga 1141 aggccatccg cggatcctac aaggtcatct atcacccaga gggtcccgag ggacccgagc 1201 aagaacttga ctttacgcca ccctttaagc gggtgtccat gatcaaaacg ctggaggaga 1261 agctgcaggt caagttcccg gctgccgata ccttcaatac gcccgagacg aatcagttcc 1321 tctcgcagct atgcaccaaa caccaggtcg agtgccccgc gccgcggacc accgcccgtt 1381 tgctggacaa gctggtgggc gagtttatcg aggagttctg catcaatccg acgttcatct 1441 gcgagcatcc gcagattatg tcgccgctgg ccaagtacca tcgcagcacg cccggcctga 1501 cggagcgctt cgagctgttc gtggccaaga aggaaatctg caacgcgtac accgagctga 1561 acgatcccgt cgtgcagcgc gaacgcttcg agcagcaggc cagcgataag gcggctgggg 1621 atgacgaggc ccagctggtc gacgagaact tctgcacggc cctggagtac ggtcttccgc 1681 ccaccggcgg tttcggcatg ggcatcgatc ggctggccat gttcctcacg gactccaata 1741 acatcaagga ggttcttctc ttccccgcca tgaagccgga ggaggccaac cgcacggcgg 1801 cggaaactgc tccggccact cagcagtaga gggccaccgc tcacccactc aaccccaatc 1861 cttgtacgtt acgctggtcc cgggctagac ccagttgcta agttattcga caaataaacc 1921 tttcctttcc aataa