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LOCUS XM_017157409 6255 bp mRNA linear INV 09-DEC-2024 (LOC108068044), transcript variant X1, mRNA. ACCESSION XM_017157409 VERSION XM_017157409.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157409.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6255 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6255 /gene="LOC108068044" /note="YLP motif-containing protein 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108068044" CDS 165..5825 /gene="LOC108068044" /codon_start=1 /product="YLP motif-containing protein 1 isoform X1" /protein_id="XP_017012898.2" /db_xref="GeneID:108068044" /translation="MWGHWQTATGAVAPMGMGMGMGMGMAMPMGMGMGAPPPQPSVPP PLPDAPPPPPPADGGGAAAGGAPGAATQLTDSSSATPSASTFNPYASGGQAAEGGEAA GGNPYKQYTAAQYAAMTPEQQYALQHHWHQWQTYQAEYAKWHAQYGEQYKREMAAAAA VAATGGVQGVQGVPAPVAAAPSPAAAPVAAPVAAPPGPQAYPVAQNYYQAAPAASPSA PSAVSTTTPNSGPPLPGKIMAQPQMYNQPPPPPPQKSNYNQQNQSSNDLWSQPPPSNR YGGQNNQMNYNSNNAGPSDNQGSGGGFPNLQQPPPSLQRPPPQQENQWGNNNQQRGNN NSNNRNSWESSGPSTDNSGQQNRWDGPPPQNEMNNRWNGPPQGNQNNSNNNTNNNNDN NNRRWDGSSNQTQSGGDRDQQSRWMSGPPPGEQNRWMSGPPPSLSDQDQQDNQQQNNN NQQQNPRQNRWQSNSNNNSNSDMGNNSKQNNFQNNRKSWLSAEERGGGNPSQNPFNKN SQSSDFDQDQSSGNNNNNFGQQRGNFGGYNNQGNSYNNQDQGGGGGNNFGGNQGTRGR DNFGNSNNNFNNNRRQSNRWDTNRNQNQNQGYSDSGGNNDSGGGNYNQNRGNFNQRNA PFQQQQNQSQNQNTNQNQNRQQQQQQTPDLDEASFDRLFDQWEQQFEDWKRANANHPD RDEYRRYEEEFEKQRRRIAERREQMRRRRQQQMGSGSASGSSTDLPKEVGASQTEEQE DDGNFSDQEQGSKSNFSAPAFRGNNQGRQSQYQPASQQELKEKQPVNPTKTPQKVITP APPVAPPMAPVHPASLPPPSEVPGPPAPPVAPPQPPTASNLGKRRQTANPAPTPTPAK QVKQEEEPIFTISLDDDDDTDEDELPAAAAAAETPMGSIFKKSDGIPGLDLVEAEQGE STEAPVAANKNESLSNVLKDPNFLNNLTQAVANVQEREQRDRQQQQQQQGQDAPPDQE RGKDGRPLSFAEWQRKKNGGNDNKSQDSRDSMSPSVAEKPEAGGPGGNTNPNPRSRPN SGPGHGPPNDGPPRFDNFGPNQVPGGNFMDFEGPNGPGPGFGPPGRNFGPRGPNFGPG PGNNFGPGPFGPGGPHFGPGPGPNFRNNGPNFNPNFGPNFGPGGPRNFGPRGGPFGGP RRDDFGGPPFGGPNFGPGGPGGPNQRGFNGPGGPGGPAPNSDNPFRRQGGPPGPNFGD DDLGAGPPRGPRNFPNRNSFGNAGGPGNNQNNNRNKNWNDGPEQQQQQFPNNNNNSHP NEPIYRPMKVFDYSNNPPAAKVIDYGHKSGDGNPIDGPSGGSAVPADRMPDFRPVKTF EYGHSSNRMGMPGVMGMGMGGGPNQGMTGGPGGPGGPGGPGGAPNSKRKNKKKNKQQK REERIQFHQNRQLQSIAVDECTSSNPGQDEQQQQQQQQQAQDEFQDQGDECPSNNEPN DLEDISDGEDNLTPLDCDDDDNEALPPPPSMSRWNQGNAPEQFNQNPFNPFPARQFGG GIDGSAPPPPTMSLFPSAANANEKVPNPVTSTHLEMSVPTSENRNTISVDEVLMNPGR QTRPKRICIILRGPPGCGKSHVARLIKEKELEMGGANPRILSIDDYFIIENDYVEKCP KTGKKIPKKEILYEYDDSMEETYMQYLIKSFKKTLSDNLYDFIIVDCNNNSLRTLNEF YCHAKDSNFVPYIVDLHCDLETCLGRNSHQRTEDEIRVVLDNWCNTPLQYIKLDVSTL LENVVEMEDVEDMATDDNACADDGETAGAAAASEDAAVEETDDSNSADASNDCGFLKS KWECDTTEDNLARLDGTKRLMQNRRTASMADYLQLEDWEPPRTSANGKKRVRWADIEE KRSQEKMRAIGFVVGQTDWNRMMDPNAGSRALNKTKYIERIKRR" misc_feature 4845..5273 /gene="LOC108068044" /note="AAA domain; Region: AAA_33; pfam13671" /db_xref="CDD:463952" polyA_site 6255 /gene="LOC108068044" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tttcaagcca aaaatggcga agttttcagt ttttttctcg tcccgattgc aagtgatttt 61 gtgaagcgct cttagttttc cggatagccc gtgttttccg tgttttccgg caaacgagaa 121 ctaaacagag agtgagcgag aagagccgcg agtgaaagcg cagcatgtgg ggccattggc 181 agacggccac cggcgcagtg gctccgatgg gaatgggcat gggcatgggc atgggcatgg 241 ccatgccaat ggggatggga atgggtgctc cgccgccgca gccttcggtg ccgccgcccc 301 tgcccgacgc cccgcccccg ccgccgccag cggatggagg gggagcagca gcaggaggag 361 ctcctggagc agctactcaa ctcaccgata gcagcagcgc taccccttcc gcttccactt 421 tcaaccccta tgccagcggc ggccaggcgg cggagggggg cgaggcggcc gggggcaacc 481 cctataagca gtacacggcc gcccagtatg cggcgatgac cccggagcag cagtacgccc 541 tgcagcacca ctggcaccag tggcagacct accaggcgga gtacgccaag tggcatgccc 601 agtacggcga gcagtacaag cgtgaaatgg ccgctgccgc cgccgtggcc gccactggag 661 gagttcaggg cgtccaggga gttcctgctc ccgtggcggc ggctccctcg cccgccgctg 721 ctcccgtagc cgctcccgtg gctgctccac cgggtccaca ggcctatccc gtggcccaga 781 attactacca ggctgccccg gctgcctcgc catccgctcc atcggctgtt tccaccacca 841 ctcccaattc cgggccaccg ctgcccggta agatcatggc ccagccgcag atgtacaacc 901 agccgccgcc gccgccaccg caaaagagca actacaatca gcagaatcag agcagcaatg 961 acttgtggtc gcagccgccg ccttctaacc gatatggcgg tcaaaacaac cagatgaact 1021 acaatagcaa caatgctgga ccatcggaca accagggaag cggaggagga tttcccaatc 1081 tccagcagcc gccgccttcg ctgcagcgtc cgccgccgca gcaggagaac cagtggggca 1141 acaacaacca acaacgcggc aacaacaaca gcaacaatcg taactcctgg gagtccagtg 1201 ggccatcaac cgataattct gggcagcaaa atcgctggga tggacctccc ccgcaaaatg 1261 aaatgaataa tcgctggaat ggaccgccgc agggcaacca aaacaacagc aacaacaaca 1321 cgaacaacaa caacgacaac aacaatcgcc gctgggatgg cagctcgaat caaacgcagt 1381 ctggcgggga tcgggatcaa cagagccgct ggatgagcgg cccgccgcct ggcgaacaga 1441 accgctggat gagcggacca ccgcctagct tgagcgacca ggatcagcag gataatcagc 1501 agcagaacaa caacaaccag cagcagaatc cccgccagaa tcgctggcag agcaacagca 1561 acaacaacag taattccgat atgggaaata acagcaagca gaacaatttc caaaataatc 1621 gaaagagctg gttgtcagca gaggagcgag gagggggcaa tcccagccag aatccattta 1681 acaagaactc ccagtcatct gatttcgatc aagatcaatc ctccggcaat aacaacaaca 1741 actttggcca gcaaagaggc aactttggcg gttataacaa ccaggggaat agttataaca 1801 accaggatca aggaggagga ggaggaaaca actttggagg caaccaggga acccgaggaa 1861 gagacaactt tggcaatagc aataataact tcaacaacaa tcgccgccag agcaatcgct 1921 gggatacgaa tcgcaatcag aatcaaaatc agggatattc tgattccgga ggcaacaatg 1981 attctggcgg agggaactac aaccaaaatc gtggcaattt caaccagcgg aatgcgccat 2041 tccaacagca gcagaatcag tcgcaaaatc agaataccaa tcaaaatcag aaccgccagc 2101 agcagcagca gcaaactccc gacttggacg aggccagctt tgaccgcctg ttcgaccagt 2161 gggagcagca gttcgaggac tggaagcggg ccaatgccaa tcatccggat cgcgacgagt 2221 atcgccgcta cgaggaggag ttcgagaagc agcgccgtcg cattgcggag cgcagggagc 2281 agatgcgtcg tcgtcggcag cagcaaatgg gatcgggatc agcttctgga tcttctacag 2341 atctacccaa agaagtggga gcttcgcaaa ccgaagagca ggaggatgat ggcaatttca 2401 gtgatcagga acagggatcg aagtccaatt tcagtgctcc cgccttccgt ggcaacaacc 2461 agggaaggca gagccaatac caaccagcca gccagcagga gttaaaggaa aagcagccag 2521 tcaacccgac taaaactccc cagaaggtga taacacctgc tccaccggtg gcgccaccaa 2581 tggctcccgt tcatccggct tccctgccgc cgccaagcga agttccgggt ccgcctgctc 2641 cgccggtggc tcctcctcag cctccgaccg ccagcaatct cggaaagcgt cggcaaacgg 2701 ccaatcccgc acccactccc acgcccgcca agcaggtgaa gcaggaggag gagcccatct 2761 tcacgatttc cctcgacgac gacgacgata cggacgagga tgagctgccc gccgccgccg 2821 ccgctgccga gacgcccatg ggcagcattt tcaagaagag cgatggcatt ccgggcctgg 2881 atttggtgga ggcggagcag ggagaatcta ccgaagctcc agtcgctgcc aacaagaatg 2941 aatccctgag caacgtccta aaagacccga atttcctcaa caatctcacc caggctgtgg 3001 ccaatgtcca ggagcgcgag cagcgcgatc gccagcagca gcagcagcag cagggacagg 3061 atgctcctcc ggatcaggag aggggcaaag atggacgccc actgtccttt gccgagtggc 3121 agcgcaagaa gaacggcggg aatgacaaca aatcgcagga ttcccgcgat tcaatgagtc 3181 ccagtgtggc ggagaagccg gaggcaggcg gaccaggtgg taataccaat ccgaatcctc 3241 gttctcgtcc aaattcggga ccaggtcatg gaccccccaa cgatggaccc cctcgctttg 3301 acaactttgg accgaaccaa gtgcccggcg gcaatttcat ggactttgag ggacccaatg 3361 gtcctggtcc tggttttggt ccgcccgggc ggaactttgg gccacgtgga cccaactttg 3421 gtcccggtcc gggtaacaac tttggacccg gaccctttgg acccggagga ccgcattttg 3481 gacccggtcc cgggccgaat ttccgcaaca atggccccaa ttttaatccc aactttggac 3541 cgaactttgg acccggaggt cctcgcaact ttggaccacg tggcggtccc tttggcggtc 3601 cgcgacgcga tgactttggt ggcccgcctt tcgggggacc caactttgga ccaggaggac 3661 ctggaggacc caaccagcgg ggattcaacg gaccaggagg accaggagga cccgcaccca 3721 acagtgataa tcccttccgc cggcagggcg gaccaccggg tcccaatttt ggcgacgatg 3781 atctgggcgc tgggccacca agaggaccca ggaatttccc caaccgcaac agcttcggaa 3841 atgcaggagg accgggaaat aaccaaaaca acaatcggaa caaaaactgg aatgatgggc 3901 cggagcaaca gcagcaacaa ttccccaaca acaacaacaa tagccaccca aacgagccca 3961 tctatcgacc gatgaaggtg ttcgactatt ccaataaccc acctgccgcc aaggtgatcg 4021 attatggcca caagtcgggc gacggaaacc ccatcgatgg gccttccggc ggaagtgcag 4081 tgcccgccga taggatgccg gatttcagac ccgtgaagac cttcgagtat ggccactcct 4141 cgaatcgcat gggaatgcca ggagtaatgg gaatgggaat gggaggaggt ccaaatcaag 4201 gaatgacagg tggaccagga ggaccgggag gaccaggagg accgggagga gctcctaata 4261 gcaagcgaaa gaataagaaa aagaacaaac agcaaaaaag ggaggagcgc attcagttcc 4321 atcaaaaccg acagttgcaa tcgattgcgg ttgacgagtg cacctcgtcg aatcccggac 4381 aggatgagca gcaacagcag cagcagcagc aacaggcaca ggatgagttc caggatcagg 4441 gcgatgagtg cccatcaaat aatgagccca atgatctcga ggatatttcc gatggagagg 4501 acaatctaac gccactggat tgcgatgatg atgacaacga agctctgccg ccgccgccct 4561 caatgagccg ctggaatcag ggaaatgccc ccgagcagtt caatcaaaat cccttcaatc 4621 catttcccgc ccgtcaattt ggcggcggaa ttgatggatc ggctccgccg ccgccaacca 4681 tgtcactttt tccctcggcc gccaatgcga atgaaaaagt acccaatccg gtgacgtcca 4741 cgcatctgga gatgtcggtg ccgaccagcg agaatcgcaa taccatctcc gtggacgagg 4801 tgcttatgaa tcccggccgc cagacgcgtc ccaagcgcat ctgcatcatt ttgcgcggtc 4861 ctcccggctg cggcaagtcg catgtggcgc gtctcatcaa ggaaaaggag ctggaaatgg 4921 gcggtgccaa tccacggatc ctgtccatcg atgactactt catcatcgag aacgactacg 4981 tggagaagtg tcccaagacg ggcaagaaga tacccaagaa ggagatactg tacgagtacg 5041 acgacagcat ggaggagacc tacatgcagt atctaatcaa gtccttcaag aagacgctca 5101 gtgataatct gtacgatttt ataattgtgg actgcaacaa caactcgctg cgcacactga 5161 atgaatttta ttgccacgcc aaagactcga actttgtgcc ctacatagtg gatctgcact 5221 gcgatctgga gacatgcctc ggcagaaact cgcatcagcg caccgaggac gagatccgcg 5281 tggtgctgga caactggtgc aacacgccgc tgcagtacat caagctggac gtgagcacgc 5341 tgctcgagaa cgtcgtcgag atggaggatg tggaggatat ggctacggac gataatgcat 5401 gcgccgacga tggggagacc gcgggagcag cagcagcatc cgaggatgcg gctgtcgagg 5461 agacggacga cagcaatagc gccgacgcct ccaacgattg cggcttcctg aaaagcaaat 5521 gggaatgtga caccaccgag gacaatctgg cccgcttgga tggcaccaag cgtctaatgc 5581 agaaccgccg gaccgccagc atggccgact atctgcagct ggaggattgg gaaccaccca 5641 ggacctcagc caatggaaag aagcgcgttc gctgggcgga tatcgaggag aagcgctcgc 5701 aggagaagat gcgagccatc ggctttgtgg tgggtcagac cgactggaac cgcatgatgg 5761 accccaatgc gggaagtcgg gccctgaata aaaccaagta catcgagcgc atcaagcgtc 5821 gctagacgcc aattacagcc acgcaactga gacagacaga aaaaaaataa caaacaaaaa 5881 actcgcgtca tttccactaa ccaaaacaaa aaagcgcagg ccatttccat ttccacatac 5941 atactatatg catatgggga ccgccgtgcg ccaacaaaag gctcaaagac cccgaattac 6001 gtttaatcat ctatcatcca aatgctatca gtataatttc gcaacaatca gtcattttta 6061 gtacggcatt tacacaaacg aatattcaat ttcgttcgaa ccacacgaac atccgcgatg 6121 aaaatcctag aaaaatagaa taaatacggg tgtattttaa ttgtaaatta aatcaattcg 6181 cttttagaac cgaatgatgc acccgacaat tttttttagt ttgacaaaat atacgagaat 6241 atatatatat atata