PREDICTED: Drosophila takahashii loricrin (LOC108068019), mRNA.

LOCUS       XM_017157359            1172 bp    mRNA    linear   INV 09-DEC-2024
ACCESSION   XM_017157359
VERSION     XM_017157359.2
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq; includes ab initio.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Oct 18, 2021 this sequence version replaced XM_017157359.1.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
            
            ##RefSeq-Attributes-START##
            ab initio :: 1% of CDS bases
            ##RefSeq-Attributes-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1172
                     /gene="LOC108068019"
                     /note="loricrin; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 1 Protein"
                     /db_xref="GeneID:108068019"
     CDS             1..966
                     /gene="LOC108068019"
                     /codon_start=1
                     /product="loricrin"
                     /protein_id="XP_017012848.2"
                     /db_xref="GeneID:108068019"
                     /translation="MKVFICLLATICACNATFLSFLGGGGGGGLGGGLGGGSKTTYNV
                     IATPSSGGGGGYGYAQGHGGHGHGAGGGSSQIIKVILQEGQGYSNAGGSGGGYSHGYA
                     QQEHHHQQAQIYKIIEQQAPAPVAPAPAPIPIPISIPAPAPVAPIAYHASSGASSGYS
                     YGQGHSYGQSYAAGHGYGGASASFDAQQFNAILPQILQLVLQEDSFGGGIGGSSAANV
                     ADINGQLINAYGSKGKAIILKADQAQGDFFKSGHVVQRGTLKVMRVQEQQQQQSQGGS
                     KGGWGAGGSSSGGWSSGGGSSSGGWSSGGGSSSGGWSSGGSSSAW"
     misc_feature    217..609
                     /gene="LOC108068019"
                     /note="Domain of unknown function (DUF4766); Region:
                     DUF4766; pfam15973"
                     /db_xref="CDD:435045"
     polyA_site      1172
                     /gene="LOC108068019"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atgaaggtct ttatctgcct gttggccacc atctgcgcct gcaatgccac cttcctgtcc
       61 tttttgggtg gcggaggagg aggaggattg ggaggcggat tgggaggagg cagcaagacc
      121 acctataatg tgatagccac gcccagttcg ggaggcggtg gaggttatgg ctacgcccag
      181 ggacatggcg gccatggaca cggagcagga ggaggctcct cgcagatcat caaggtgatt
      241 ctgcaggagg gtcagggcta tagcaacgcc ggaggatcag gaggaggtta cagtcatggt
      301 tatgcccagc aggagcatca tcatcagcag gcccagatct acaagatcat cgagcaacag
      361 gctccggctc cagttgctcc cgctcccgct cccattccca ttcccatctc gattcccgcc
      421 cctgctcccg tggctcccat tgcctatcat gcgtctagtg gagcatcctc tggctactcc
      481 tacggccagg gtcactctta cgggcagagc tatgccgccg gtcatggtta tggaggagcg
      541 tccgcctcct tcgatgccca gcagttcaac gccatcctgc cgcagatcct ccagctggtg
      601 ctgcaggagg actcctttgg cggtggaatc ggtggctcct ccgccgccaa tgtggccgac
      661 atcaatggcc agctgatcaa tgcctacggc tccaagggca aggccatcat cctgaaggcc
      721 gaccaggcgc agggcgactt cttcaagagc ggtcatgtcg tgcagcgcgg cactttgaag
      781 gtgatgcgtg tccaggagca gcagcagcag cagtcgcaag gtggctccaa gggcggctgg
      841 ggtgcaggtg gatcctcttc cggtggctgg agctccggag gaggctcctc ttccggcggc
      901 tggagctccg gaggaggctc atcttccggc ggctggagct caggcggctc ctcttccgcc
      961 tggtaaatgc actgcatccc cagttatccc tagttagtta gaccaaatga attgcctttt
     1021 tttttcgcta tcctctattc tatcgttatg tatttttttt cctaggctaa tccttcacag
     1081 tcattatcga aattatcaac cacgaaaaaa agatcaacaa aacatccatc attattaacc
     1141 taaattattt gttaataaac aatttgaaac aa