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LOCUS XM_017157358 3796 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017157358 VERSION XM_017157358.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157358.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3796 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3796 /gene="btd" /note="buttonhead; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108068018" CDS 1374..3335 /gene="btd" /codon_start=1 /product="transcription factor btd" /protein_id="XP_017012847.2" /db_xref="GeneID:108068018" /translation="MIDAACNYLNLNLNPNPYVQQQQQAAQQQAAQQQQHHLHMQQAQ QQLHLSQQQHQQHMQHLPQQQQMQQQQMQQQQQPQQQPHDFLLSAPSSLSGSSSGSSS GGSPIYNSSGSGSSKAPMKLELPYPQASSTGTASPNSSIQSAPSSASVSPSIFPSPAQ SFASISASPSTPSTAATHLAPPTAATSSSPSSSSSSSSSAASASAAAAAAAAAAAAAD LGAAAVASAAYGWNTAYSGLGPPRSQFPYAQYASDYYGNAVGAMSSSAAWFSHQERLY QPWSSQSYPGFNFDDIAFQTQLQRRSVRCTCPNCTNEMSGLPPIVGPDERGRKQHICH IPGCERLYGKASHLKTHLRWHTGERPFLCLTCGKRFSRSDELQRHGRTHTNYRPYACP ICSKKFSRSDHLSKHKKTHFKDKKSKKALAAEAKEQAAAAIKQEKKEKKAGKQPLVTP VEFKQEQPEVAAPLVNYAPYANLYQQSSGGSANALPPPPPLFQQHHHQQQMASSSSSA AAGYVEQQPWSSRAIQQPAAAVVTTSANSTTSTASSAASSPATAAAAAVAASSPAASA TALAAQHHYAALAMQSESQLAAEYGLTMSGLASGASQDSSSSCHMKSEYAASYPAEFG AGTASYGYPHPHPHHHNAWAAAYHPHATA" misc_feature 2379..2438 /gene="btd" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(2391..2393,2397..2399,2403..2405,2409..2414, 2421..2426,2433..2435,2475..2477,2481..2483,2493..2498, 2505..2510,2517..2519,2559..2561,2565..2567,2571..2573, 2577..2582,2589..2594,2601..2603) /gene="btd" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 2412..2489 /gene="btd" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 2460..2522 /gene="btd" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2496..2573 /gene="btd" /note="Zinc-finger double domain; Region: zf-H2C2_2; pfam13465" /db_xref="CDD:463886" misc_feature 2538..2606 /gene="btd" /note="Zinc finger, C2H2 type; Region: zf-C2H2; pfam00096" /db_xref="CDD:395048" misc_feature 2544..2606 /gene="btd" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" ORIGIN 1 tcgacattaa cttttacaat atttcgctca catcactcac atcgcataca tctcaactaa 61 attttattaa acaaaaataa cgaaatggat aaagtttata tgactctaag aaaccgagtt 121 gtgtactaca ccgaaccaac aagaagagtg cgaaggacca gaagggtgca gagacaagca 181 gatcaaaatg atatgcaagt ggtaaagcca atcgagccat cgccgttacc ggcagaaaat 241 gggagtgacc aatcgagtga tagcgaaatg gatctggaga tcccctgata taaggttata 301 tttgcttaaa gttggaggtg cgttaaatat gttgtaattt ttgttaatat tttagtgcga 361 gtgaaattca aattccagtt gtatttttag ttgaagttta atttaaattc tggtacaaca 421 acaacaacca caacagcaat atgagagcac caaggagcaa caacaacaac aacagcaacc 481 caattgcttt gacacacaaa cccacacata gaaattaaaa caaaacgccc gcggcagcag 541 cagcagcagc aaaaacaaca ataccaaagg caaggagaga gcaccaccaa ctactcagtg 601 cgcgaaaaag agagccagag agtgctgttc cagggagtca cagttagttg gccatggcaa 661 agcagagcga gcgagacaaa gcgagcgtgc ccggaaggca cgaagaaaaa aaaacaacca 721 ccatgattgt cgtcccccca gcatggccac agagagagcg agcgagagag cgcgcgagag 781 ggcgcgtggc gagagcagca tggcggagcg taagccaaag caggacagca ctagcgctgc 841 gctgctgctg ctgctctctg ccccgctcgc tgcccgcgcc gctgcccgca gccaagtgat 901 tcgttttgta cgttgttaga ctctctcgcc gcgttttgga attcagtcgg caatcgacga 961 taattaccgg tggttctatc acatcacgcg cagcagcagc agcacgaaga agaagaagaa 1021 gaggcagtag cagtagcaga gaaactcgct cgttttcgga tctatatata tatatatacg 1081 catatatata tgtactacga attttcgttt gcctttaatt tgtttgtgtt ttttccgtgt 1141 tctcctccgc atgtgcatgc aattacgtgc gccgcggcaa aagactataa ttataaaact 1201 aaagtgaaaa gcgtgccata attacacgag cgaatatcaa taagtgcgaa taagagcgaa 1261 gagcaatgtg cgaaaattgc taacgaagta gtagccgaaa aaaaaacata atcgcagatt 1321 ccaaaaagaa aaaaccttaa aatccaacga aagaaaagct accgtttttc aaaatgatcg 1381 atgcggcctg caattacctg aatctcaatc tgaatccgaa tccctatgtg caacagcagc 1441 agcaggcggc gcaacagcag gcggcgcaac agcagcagca tcatcttcac atgcagcagg 1501 cgcagcagca actgcacttg tcgcaacagc agcaccaaca gcacatgcaa cacttgccgc 1561 agcagcaaca aatgcaacag cagcaaatgc aacagcaaca gcaaccgcaa cagcagccac 1621 atgacttcct gctgtccgcc ccctcgtccc tctccggctc aagttccggc tccagttccg 1681 gtggctctcc catctacaac agcagcggca gcggcagcag caaggcgccc atgaagctgg 1741 agctgcccta tccgcaggcc tcctccaccg gcaccgcctc acccaattcc agcatccagt 1801 cggccccctc ctccgcctcc gtttcgccca gcatcttccc ctcgcccgcc cagtcgttcg 1861 cctccatttc ggccagtccc tcgacgccct cgaccgccgc cacccacttg gcgccaccca 1921 cagcggcaac atcctcgtcg ccgtcttcct cctcctcctc ctcgtcgtca gccgcctcgg 1981 catcggcggc agcggcggcg gcagcagcgg cagccgcagc agcggacctc ggggcagcgg 2041 cggtcgccag tgccgcctac ggctggaata ccgcctactc cggattggga cctccaagaa 2101 gccagttccc gtatgcccag tacgcctccg attactacgg caatgcggtg ggcgccatgt 2161 cctcctcggc cgcctggttc tcccatcagg agcgtctcta tcagccctgg agctcccaga 2221 gctatccggg cttcaacttc gacgacatcg ccttccagac gcagctgcag cggcgctccg 2281 ttcgctgcac gtgccccaat tgcacgaacg agatgagcgg actgccgccg attgtgggtc 2341 ccgatgagcg cggtcgcaag cagcacatct gtcacattcc cggctgcgag aggctgtacg 2401 gcaaggcctc ccatttgaag acccacctgc gctggcacac gggcgagcgg cccttcctgt 2461 gcctcacctg cggcaagcga ttctcgcgat ccgacgaact gcagcggcac ggcaggacgc 2521 acaccaacta ccggccctac gcctgcccca tttgctccaa gaagttctcg cgcagcgatc 2581 atttgagcaa gcacaagaag acccatttca aggacaagaa gagcaagaag gctctggccg 2641 ccgaggccaa ggagcaggcg gcggcggcga taaagcagga gaagaaggag aagaaggcgg 2701 ggaagcagcc tttggtgact ccagtggagt tcaagcagga gcagccggag gttgcagcgc 2761 cgctggtcaa ctatgcgccg tatgcgaatc tctaccagca atcgagtggc ggctccgcca 2821 atgcactgcc accaccgccg ccgctcttcc agcagcatca tcatcagcag cagatggctt 2881 cctcctcctc ctccgccgcc gcaggctatg tggagcagca gccctggagc agccgtgcca 2941 tacagcaacc agcagcagca gtcgtcacta cctcagcgaa ctcaaccaca tccacagcct 3001 ccagtgcggc cagttcacca gcgacggcgg cggcagcggc ggtggcggca tcctcgccag 3061 ccgcctcggc gacggcactg gccgcccagc atcactatgc cgctctggcc atgcagagtg 3121 aatcccagct ggccgccgaa tatgggctga ccatgagcgg actggccagc ggagcgagcc 3181 aggactcaag ctccagttgt cacatgaagt ccgagtatgc ggccagttat ccagctgaat 3241 tcggagcggg caccgccagc tacggctatc cgcatccgca tccgcatcat cacaatgcct 3301 gggcagcggc ctatcatccg catgccacgg cctaggattc aaaggattcc tcatccccca 3361 agattgttac agtttaaagt tgaaagaaca aaacgaaatg ccataaagtc ccgaaagaag 3421 gcaaagaaag caagcgtaga acgaacctct agtgtgtgtg ttttttttca gtgtttattg 3481 ttgatatata taaaaataga tgtgaaaatc gaagaaaaaa aaatccacaa ataccgccta 3541 agacattata ttacattaca tattataatt atatattata tatattaact atacatgtag 3601 ctagttctag aaattttttt tcaatttttt ttccccccca aaaacctagt taaggcattt 3661 ttttttgcat gtctgtacat acaaatatat atcgtgtttt tttttaagcc ataccatata 3721 gaatgagaga aaccatctag ttgtgtacca taataattgt taattgtctt taagataaat 3781 tatatacaaa gcaaac