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LOCUS XM_017157106 3478 bp mRNA linear INV 09-DEC-2024 (IntS4), mRNA. ACCESSION XM_017157106 VERSION XM_017157106.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157106.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3478 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3478 /gene="IntS4" /note="integrator complex subunit 4; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108067850" CDS 177..3212 /gene="IntS4" /codon_start=1 /product="integrator complex subunit 4" /protein_id="XP_017012595.2" /db_xref="GeneID:108067850" /translation="MALAIKKRFGSYVETVDGAPAVKKLRLQTLAADAKAGKAGKAGN AERKLTALSQLDAYVGSLPAAVPPGPPTAPPTAPATTSSAAVVATPTTQNSRELLELL VKITDEISYEDVELAELKEVANKIFQLYQLQASDSDTSIRVKLLELLSGLGCECATEQ AVTLIIDYFIYLLRKECSQKVLAQGMMCLFRIGERRKHLVPISYNTQVAHLAKEQLRS GSTHTQKNAMLVIGRFATKMEGERHYVWKLAFYIDSQDSGVRAQALHALLTLGERGSQ LPAVLYRRAVEAMKDDYECVRKEALRLVFMLGNRHPDYVIPSDRQQEELRMIDAAFSK VCEALCDLSLQIRVLAAELLGGMTAVSREFLHQTLDKKLMSNLRRKRTAHERGARLVT SGEWSSGKRWADDAPQEHLDARSISIIASGACGALIHGLEDEFLEVRTAAVASMCKLA LSRPDFAVTSLDFLVDMFNDEIEDVRLKAIYSLTAIARHIVLREDQLEIMLGSLEDFS VEVREGLHLMLGACRVSTQTCLLMVVQKLLDVLAKYPQDRHSTYACMRKIGQKHPHLV MAVAVHLLYVHPFFETPERDVEDPSYLCVLILVFNAAEHLVPIISLLPTATHRHYAYL RDSMPHLVPQLPIEGASSRIDSAMRQAGSSAEYLQMILSHIEEIFTMADERVELLQTA QSNLQRLGAIDAGMYGTSNFLETFLAAQIQIEQMQRCASTQRSRVPLKESLAALIRNC LKLQHTFSGLNYGDILQVKQLRLRACALHLVLVVRDRSQSALGPCQMLLQTAGDIAEF IKANTKEEEEKPPLEQPEKQSSSSSSGSRDTAQPDSFTRQLLGKLDAISDPKPGRVFR EILPLVQQAPPLALPPANEKIRRCVANILEPCPLQSQDNVIKVTAGLIAAVPFVAEID NLLESQKADMRIKIKYPDQHMHTVVPKRSDFKPIMTEQGEHETNVRLRTTILLSHSVW TESSLVEIQLCLAVRPGSELELCKPAKVLFAPKPVRRGI" misc_feature <1443..1739 /gene="IntS4" /note="HEAT repeat [General function prediction only]; Region: HEAT; COG1413" /db_xref="CDD:441023" misc_feature 1443..1526 /gene="IntS4" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1551..1643 /gene="IntS4" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 1659..1733 /gene="IntS4" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" polyA_site 3478 /gene="IntS4" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgacagtatc gattgtcacg aggccatcgc tagcggcggc tgtcgtcaga ctatcgacag 61 agtgccatct ctaatttgcg gaccacaact tttcggggag cggatttttg atttcatcag 121 atttcttggg aactgccaac aggtggcaga cgagactgcg actccatttg gaaaccatgg 181 cgctggccat caagaagcgc ttcggctcct acgtggagac ggtggacggg gcgccggcgg 241 tgaagaagct gcgcctgcaa accctggccg ccgatgcgaa ggccgggaaa gccggaaaag 301 cgggaaatgc ggagcgcaag ctgacggcgc tcagccaact ggacgcctat gtgggcagcc 361 tgccagcggc tgtcccgccg gggccaccaa ctgctcctcc cactgccccc gccacaacct 421 cctccgccgc cgtcgtggcg acgccaacca cgcagaatag ccgggaactg ctggagctgc 481 tggtgaagat caccgacgag atatcctacg aggacgtcga gctggccgag ctgaaggagg 541 tggccaacaa gatcttccag ctgtaccagc tgcaggcgag cgacagcgac acctccatcc 601 gggtgaagct gctcgaactg ctctccggtt tgggatgcga gtgcgccact gagcaggcgg 661 tcacgctgat catcgactac ttcatctacc tgctgcgcaa ggagtgctcc cagaaggtgc 721 tcgcccaggg catgatgtgc ttgttccgaa ttggcgagcg gcggaagcac ctagtgccca 781 tttcgtacaa cacacaggtg gctcatctgg ccaaggagca gctgcgctcc ggctccacgc 841 acacgcagaa gaacgccatg ctggtgattg gacggttcgc caccaaaatg gagggcgaac 901 ggcactacgt ttggaagctg gccttctaca ttgactcgca ggactcgggt gtgcgcgccc 961 aggcgctgca cgcgctgctc accctcggcg agcggggatc ccagctgccg gcggtgctct 1021 acaggcgggc cgtcgaggcc atgaaggatg actacgagtg cgtgaggaag gaggcgctgc 1081 gcctggtctt catgctgggc aacaggcatc cggactacgt gataccctcg gatcgccagc 1141 aggaggagct gcgcatgata gacgccgcct tcagcaaggt ctgcgaggcg ctgtgcgatc 1201 tctcgctgca gatacgcgtg ctggcggctg agctgctggg cggcatgacg gccgtcagcc 1261 gggagtttct gcatcagacg ctggacaaga agctgatgag caatctgcgc cgcaagcgga 1321 cggcgcacga gcgcggcgcc cggctggtca ccagcggcga gtggtcctcc ggcaagcgct 1381 gggccgacga tgcgccgcag gagcacctgg acgcgcgcag catctcgatc atagccagcg 1441 gcgcgtgcgg cgccctcatc cacgggctgg aggacgagtt cctggaggtg cgcaccgcgg 1501 cggtggcctc catgtgcaag ttggccttgt cgcggccgga ctttgcggtg accagcctgg 1561 actttctggt ggacatgttc aacgacgaga tcgaggacgt gcggctgaag gccatctaca 1621 gtctgaccgc cattgcccgg cacattgtgc tgcgcgagga tcagctggag atcatgctcg 1681 gctcgctgga ggacttctcg gtggaggtgc gcgagggact gcatctcatg ctcggcgcct 1741 gccgcgtctc cacgcaaacg tgcctgctga tggtggtgca gaagctgctg gatgtgctgg 1801 ccaagtatcc gcaggatcgg cactccacgt acgcctgcat gcgcaagatc ggccagaagc 1861 atccgcatct cgtgatggcg gtggccgttc acctgctcta cgtgcatccc ttcttcgaga 1921 cgcccgagcg ggatgtcgag gatccctcgt acctgtgcgt cctcatcctg gtcttcaatg 1981 cggccgagca cctggtgccc atcatcagtc tgctgcccac ggcgacgcac cggcactacg 2041 cctatctgcg cgactcgatg ccgcatctgg tgccccagct gcccatcgag ggcgcctcct 2101 cgcgcatcga ttcggccatg cggcaggcgg gcagctcggc ggagtacctg cagatgatac 2161 tcagccacat cgaggagatc ttcacgatgg ccgacgagcg ggtggagctg ctccagacgg 2221 cccagtccaa cctgcagcgc ctgggagcca tcgatgcggg catgtacggc acctcgaact 2281 tcctggagac cttcctggct gcccagattc agatcgagca gatgcagcgc tgcgccagca 2341 cgcagaggag ccgcgtgccg ctcaaggaat cgctggcggc gctcatccgc aactgcctca 2401 agctgcagca caccttctcg ggcctcaact acggcgacat tctgcaggtg aagcagctgc 2461 gcctaagggc ctgcgccctg cacctggtgc tcgtggtgag ggatcgctcg cagagcgccc 2521 tgggtccctg ccagatgctg ctgcagaccg ccggcgacat tgccgagttc attaaggcga 2581 acacaaagga ggaggaggaa aaaccgccgc tggagcagcc agagaagcag tccagcagca 2641 gcagcagcgg cagcagggac actgcccagc cggacagctt cacccgccag ctgctgggca 2701 agctggatgc catttcggat cccaagccgg gtcgcgtctt ccgcgagatc ctgccgctcg 2761 tccagcaggc tccgccgctg gcgctgccgc cggccaacga gaagatacgc cgctgcgtgg 2821 ccaacatcct ggagccctgt ccgctgcagt cgcaggacaa tgtgatcaag gtgacggccg 2881 gcctgattgc cgccgttccc tttgtggccg agatcgacaa cctgctcgag tcgcagaagg 2941 cggacatgcg gatcaagatc aagtaccccg accagcacat gcacacggtg gtgccgaagc 3001 gcagcgactt caagcccatc atgacggagc agggcgagca cgagacgaat gtgcgcctgc 3061 gcaccaccat cctgctctcg cacagcgtct ggacggagtc ctcgctggtg gagatccagc 3121 tgtgcctggc cgttcgcccc ggcagcgagc tggagctctg caagccggcc aaggtgctct 3181 tcgcccccaa gccggtcaga cgcggcattt agctggctga tctcggggcg gatggagccg 3241 cgggtggacg gagccggcgg cgcaggagcg gattgaggag ctgacaaggc cacacagccg 3301 ctggagaagc agagaatcgg gcggaccgat tttcaactgt tcaagtaaat atgtatatcg 3361 ttgtctaggg aaacagttgg ctagcctatg tatttttgat cttttaaggc ctcagttgtg 3421 tagcatatat catatgtatt tttttccagt ttaaataaag aaagtaataa tcaaaata