PREDICTED: Drosophila takahashii Regulatory particle triple-A

LOCUS       XM_017157055            1416 bp    mRNA    linear   INV 09-DEC-2024
            ATPase 4 (Rpt4), mRNA.
ACCESSION   XM_017157055
VERSION     XM_017157055.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017157055.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1416
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1416
                     /gene="Rpt4"
                     /note="Regulatory particle triple-A ATPase 4; Derived by
                     automated computational analysis using gene prediction
                     method: Gnomon. Supporting evidence includes similarity
                     to: 3 Proteins"
                     /db_xref="GeneID:108067821"
     CDS             102..1295
                     /gene="Rpt4"
                     /codon_start=1
                     /product="26S proteasome regulatory subunit 10B"
                     /protein_id="XP_017012544.1"
                     /db_xref="GeneID:108067821"
                     /translation="MTVTATPLPDNLRVKAFSDYRKKLLEHKEIEGRLKEKREEIKEL
                     TKLYDKSENDLKALQSVGQIVGEVLKQLTEDKFIVKATNGPRYVVGCRRQLDKAKLKS
                     GTRVALDMTTLTIMRYLPREVDPLVYNMSHEDPGDVTYSAIGGLTEQIRELREVIELP
                     LLNPELFLRVGITPPKGCLLYGPPGTGKTLLARAVASQLDANFLKVVSSAIVDKYIGE
                     SARLIREMFNYARDHQPCIIFMDEIDAIGGRRFSEGTSADREIQRTLMELLNQMDGFD
                     SLGQVKMIMATNRPDTLDPALLRPGRLDRKIEIPLPNEQARLEILKIHALKIAKHGEI
                     DYEAIVKLSDNFNGADLRNVCTEAGLFAIRAEREYVIQEDFMKAVRKVSDNKKLESKL
                     DYKPV"
     misc_feature    138..1262
                     /gene="Rpt4"
                     /note="proteasome-activating nucleotidase; Provisional;
                     Region: PRK03992"
                     /db_xref="CDD:179699"
     polyA_site      1416
                     /gene="Rpt4"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 cacactgcac tacacaaaaa actgcaattc actaccgaaa ctttgggcat ttaattgaat
       61 tgaatttaag caaaagtagc aaaagtaaat ccgccaacaa gatgaccgtg accgccacgc
      121 cgctgcccga caatctgcgg gtgaaagcct tctccgacta ccgaaagaag ctgctggagc
      181 acaaggagat cgagggacgc ctcaaagaaa agcgcgagga gatcaaggag ctgaccaagc
      241 tgtacgacaa gtcggagaac gacctaaagg ccctgcagag cgtgggacag attgtgggcg
      301 aggtgctgaa gcagctgacc gaggataaat tcattgtgaa ggccaccaat ggaccgcgct
      361 acgtggtcgg ttgccgccgg cagctggaca aagcgaagct caagtcgggc acccgtgtgg
      421 ccctcgacat gaccactttg accatcatgc gctacctgcc gcgcgaagtg gatcccctgg
      481 tgtacaacat gtcgcacgag gatcccggcg atgtgaccta ctcggccatc ggcggcctca
      541 ccgagcagat tcgcgagctg cgcgaggtca ttgagctgcc tttgctcaat ccggagctct
      601 tcctgcgcgt cggcatcacg ccgcccaagg gctgcctgct ctacggaccg ccgggcacgg
      661 gcaaaacgct cctcgcccgc gctgttgcct cccagctgga cgccaacttc ctgaaggtcg
      721 tctcctcggc catcgtggac aagtatatcg gcgagagtgc ccgcctgatt cgcgagatgt
      781 tcaactatgc ccgcgatcac cagccctgca tcatttttat ggacgagatc gacgccattg
      841 gcgggcggcg cttctccgag ggcacctccg ccgatcgcga gatccagcgc acgctgatgg
      901 agctgctcaa ccagatggac ggcttcgatt cgctcggcca ggtgaagatg atcatggcca
      961 ccaatcggcc ggacaccctg gatccggcac tcctgcgtcc gggtcgcctg gacaggaaga
     1021 tcgagattcc gctgcccaac gagcaggcga ggctggaaat cctcaagatc cacgctctga
     1081 agatcgccaa gcatggagag attgactatg aggccattgt caagctgtcg gacaacttca
     1141 atggcgccga tctgcgtaat gtgtgcacgg aggcgggtct ctttgccatt cgtgccgagc
     1201 gggagtacgt catccaggag gacttcatga aggcggtgcg caaggtgtcg gacaacaaga
     1261 agctggagag caagctggac tacaagcccg tctaaaggag agggaagaac cgcccgccca
     1321 tagagataaa ccacttttac acacatatac agatatatat attagatgct gctctgctgc
     1381 tccatatgct aattaaatgc tatgtaaaga tttaaa