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LOCUS XM_017157014 2941 bp mRNA linear INV 09-DEC-2024 (LOC108067803), mRNA. ACCESSION XM_017157014 VERSION XM_017157014.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017157014.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2941 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2941 /gene="LOC108067803" /note="PHD finger protein 12; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108067803" CDS 183..2777 /gene="LOC108067803" /codon_start=1 /product="PHD finger protein 12" /protein_id="XP_017012503.2" /db_xref="GeneID:108067803" /translation="MSKVDQDPNASLSIMEQIKQLIRPPPNEDEKLVQRSTNTKHPYY RRPGRGHNHDYCDACEEGGNLLCCDRCPSSFHLQCHDPPLSEEDIPSGQWLCHSCRMA KVSQPPASSSSKASSVERVDRVPSAGSGSRGNTPSSSGDLESIPLKIRNLRKRSNSER NSTEKLLAKMPLAIQRALDPNKKPTPLDDVIRAASMLNPQQFSLPPELELHTQFPGNG KVQPVQQSQPSSGGGGTGNGGGIRKCAGNQRRNSKPFELDAQGLVPLPAKTCFYCTRS CKRAPLISCDYCPLYYHQDCLDPPLTALPAGLWMCPNHAENFIDANMTSSISATERVR LWNRFHQPLDHENVKLEFFRRVNTRHPPFRTRIALRPRAHIEVPATVRHHYEHPPALL PSMRQTLRYDRVKRRKNLPTAVEEISRESVTESLLKDLEALRSARAKFREIQREYGSL ETAVEGDSDSDECESLKVRESDQVNGQLETETEEQQPSVVKVESKATLELEMSFEEDE EDGGKAGIIDADLFHLDVDIIKKLAHQRLQQLVAEHPEIVRQYKNRTAARRLRQLAAA PTTQSTALQDHLSPEDMSRFSLLFTSETSSILAQKNGNAADEDPAMALHPALATAAAI AAADAAAESYVPRTRSDTEKAYELASRLELKLLQCKVQARAVITPLGDLLEDSRWFSS LSLDHSIFMRYRSLYIGYGGHYSPSTTLSQMETVDLSAIGYCCRISPQHAIVFYDEFS KSYELINYSEFGTEVNGQLYACDLADRMPTHAGKRMRPDDAELKRRVDDLLDKRRHIQ RQFEQKRPGKERLAPIVKPACRCTNGAPVPMVAGAWEGSAVLAHGSLLRFGCLSFVFS VPSADRRS" misc_feature 345..479 /gene="LOC108067803" /note="PHD finger 1 found in PHD finger protein 12 (PHF12); Region: PHD1_PHF12; cd15533" /db_xref="CDD:277008" misc_feature order(345..347,372..386,396..398,462..464) /gene="LOC108067803" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277008" misc_feature 720..830 /gene="LOC108067803" /note="PHD finger protein 12 MRG binding domain; Region: PHF12_MRG_bd; pfam16737" /db_xref="CDD:465250" misc_feature 990..1124 /gene="LOC108067803" /note="PHD finger 2 found in PHD finger protein 12 (PHF12), yeast Rco1, and similar proteins; Region: PHD2_PHF12_Rco1; cd15534" /db_xref="CDD:277009" misc_feature order(1023..1037,1047..1049,1107..1109) /gene="LOC108067803" /note="putative histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:277009" misc_feature 2163..2753 /gene="LOC108067803" /note="forkhead associated (FHA) domain superfamily; Region: FHA; cl00062" /db_xref="CDD:469597" misc_feature order(2277..2282,2364..2369,2373..2375,2433..2438) /gene="LOC108067803" /note="phosphopeptide binding site [polypeptide binding]; other site" /db_xref="CDD:438755" polyA_site 2941 /gene="LOC108067803" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 atggactgcc tatcgatagg cattcagtgt gaccagtggt tcaggggatg cgcagggctg 61 cacagtgaaa ataccataaa aataccgaat accgtcgccc gcctccgcct ccaaagaaag 121 tgaagagttg cttgccgaga ttgattgtgt acaccggata cgaggagtac tctacgaaaa 181 agatgtctaa agtggaccag gacccgaacg cctcgctgag catcatggag caaatcaagc 241 agctcatccg cccgccgccc aacgaggacg agaagctggt ccagcggagc accaacacga 301 agcatccgta ctacaggcgg ccgggcagag gccacaatca cgactactgc gacgcctgcg 361 aggagggggg caatctgctg tgctgcgacc gctgcccctc cagcttccac ctgcagtgcc 421 atgatccccc cctgagcgag gaggacatcc ccagtggcca gtggctgtgc cacagctgcc 481 gcatggccaa ggtctcccag ccgccggcct cctcctcctc caaggcgagc tccgtggagc 541 gcgtggatcg ggttccctct gcgggcagcg gttcccgcgg caatacgccc tcctcctccg 601 gcgatctgga gtccataccg ctgaagatcc gcaacttgcg caagcgcagc aacagcgagc 661 gcaacagcac cgagaagctg ctggccaaga tgccgctggc catacagcgt gccctggatc 721 cgaacaagaa gcccacgccg ctggacgatg tcattagggc ggccagcatg ctcaatccgc 781 agcagttctc gctgccgccg gagctggagc tgcacaccca gttcccgggc aatggcaagg 841 tgcagcccgt ccagcagtcg cagccgtcaa gtggcggggg aggcactgga aatggcggtg 901 gaattcgcaa atgcgctggc aatcagcgac gcaactcgaa gcccttcgaa ctggacgccc 961 agggactggt gccgctgccc gccaagacct gtttctactg cacgcgcagc tgcaagcggg 1021 cgccgctcat ctcgtgcgac tactgcccgc tgtactacca ccaggactgc ctggatccgc 1081 cgctaacagc gctgccggcg ggcctctgga tgtgccccaa tcatgccgag aactttatag 1141 acgccaacat gaccagcagc atttcggcca cggagcgcgt gcgcctgtgg aaccgcttcc 1201 accagccgct ggaccacgag aacgtcaagc tggagttctt ccggcgggtc aacacccgcc 1261 atccgccctt ccgcaccagg attgccctgc gtccgcgtgc ccacatcgag gtgccggcca 1321 cggtgcgcca ccactacgag catccgcccg ctctgctgcc ctcgatgcgc cagacgctgc 1381 gctacgatcg cgtgaagcgg cgcaagaatc tgcccaccgc cgtggaggag atatcccgcg 1441 agtcggtcac cgaatcgctg ctcaaggatc tcgaggctct gcgctcggcc cgcgccaagt 1501 tccgcgagat ccagcgggag tacggcagcc tggagacggc cgtcgagggc gacagcgata 1561 gcgatgagtg cgagagtctg aaggtccgcg aaagcgacca ggtgaatggc cagttggaaa 1621 cggaaacgga ggagcagcag ccgtcggtgg tgaaggtgga atccaaggcc actttggagc 1681 tagagatgag cttcgaggag gacgaggagg acggcggcaa ggcgggcatc atcgatgcgg 1741 acctctttca cctcgatgtg gacataatca agaagctggc gcaccagcga ctgcagcagc 1801 tggtcgccga gcatccggag atagtgaggc agtacaagaa tcgcacggct gcccggcgat 1861 tgcgtcagtt ggctgctgct ccaactaccc aatcaactgc cctgcaggat catctttcgc 1921 cggaggacat gagccgcttc tcgctgctct tcaccagcga aacgtcctcg atattggcgc 1981 aaaagaacgg caatgccgcc gacgaggatc ccgccatggc cctgcatccc gctttggcca 2041 ccgcggcggc cattgcagcc gcagatgcag ctgccgaaag ctatgtgccg cgcacgcgca 2101 gcgatacgga gaaggcctac gagctggcct cgcgcctgga gctcaagctg ctccagtgca 2161 aagtgcaggc aagggctgtc atcaccccgc tgggcgattt gctcgaggac agccgttggt 2221 ttagttccct aagcctcgac cattcgatct tcatgcgcta ccgctcgctg tacatcggct 2281 acggcggcca ctactccccg tcgacgacgc tgagtcaaat ggagactgtg gacctctcgg 2341 ccatcggcta ctgctgccgc atctcgccgc agcacgccat cgtcttctac gacgagttct 2401 ccaagtccta cgagctgatc aactactcgg agttcggcac cgaggtgaac gggcagctct 2461 acgcctgcga cctggccgac aggatgccca cgcacgcggg caaaaggatg cggcccgacg 2521 acgccgagct gaagaggcgc gtcgacgatc tgctggacaa aaggcggcac atccagcggc 2581 agttcgagca gaagcggccg ggcaaggagc gactggctcc cattgtgaag cccgcctgcc 2641 gctgcacgaa cggcgcaccc gtgcccatgg tggccggcgc ctgggaggga tcggcggtgc 2701 tggcccacgg cagcctgctg cgcttcggct gcctgtcgtt tgtgttctcg gtgccgtcgg 2761 cggatcggcg atcgtagagg agatccctcc tcctcctcct ccctggaagt tagtttaagg 2821 cagctagcag cttaggatta agattaagtt gaagcatcat cattgccgca ctcacataaa 2881 tcctcccatt aattgtactt ctaattgtat aaataaagtg aaataaaatt gtaagaatta 2941 a