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LOCUS XM_017156855 6402 bp mRNA linear INV 09-DEC-2024 (LOC108067704), transcript variant X2, mRNA. ACCESSION XM_017156855 VERSION XM_017156855.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017156855.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6402 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6402 /gene="LOC108067704" /note="uncharacterized LOC108067704; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108067704" CDS 740..4285 /gene="LOC108067704" /codon_start=1 /product="uncharacterized protein" /protein_id="XP_017012344.2" /db_xref="GeneID:108067704" /translation="MESDEQQQEVVGGSAPLCRICITTHHQQPNNNTNNTTASPANLP MIPIFGEDALWQKITTLANVKISKNDTLPQQVCVACAKSAISACVFKKKCEEADHFYR QQLRLQKIEGADPLETSASAGDQAKSSGCSSGSGSSSASGSGSGSSSSSSSSSDDEDE DNDQDQEQDQEQELDEVEAGEAGHKRLQNGYSPVINGHRGDGVQEEELMDDHHHAAGH EEEEQDEQDHHRNGLELAEVNPEDEDDDDVEEVNPMNHHHHHHDNNDDDGEITGHAGH PKEPFDFNSIRLMQEYMQHQMNKFPNGSAAGGHPDMELDLDQQQHHHHHHDDDDEDMS LPLIPEIELITPGDEAPADASNHNDLDLVNGVGVGVGVVQGMRGPGFQCPHCYQIFEM KQILKAHMQSVHGAPGPVYECSNCRKTYFYKRFLEKHIRRGRCVKKRRNQTRPMQCSD CHVLFPTGHHLGWHKRTGCPSKAAKMPLQQLFKQNIVQFNNFPKRIAAGGGGGGGGGA ARKPTAPELHINNRKLGLANKRKGRTRIKLDAKKIALAKQLILREATTTVIANELNIS RTFAWRLRKSLVNGVSLHERVVDPSQEEQHLQQLQQQQHHHHQQLQLQQQEEQQQQQR EREQHHLSSLPYSHLGLGLIKEERQDSEDEEQQQQQRQHHHHSLGLVDECGADEIGAE ETAGYMGDEDAVSGLLHNGGYDPDPDSDPIEHDPFEGTENHEHPANGSVSPAAKLVPP SGVPVPVPVQVHAAAAAAAAARSDVEVYKRLLAESQHFPHIVNAQQLQMQQQHRERER EQRDRERAREREREREQLQQQQKVHNGGMPMLTRYPPAVMHALPVNLSLRSMPPHMNS NESNGSSSSNTAAPVPVPVAGSSAATSTGATPTGKKPRKPNVFIDDEKYAMAKLLVAQ NSSTMEIARALNVSQMTAWKVRDAILKGVPLSYRNKRSDGRHSEEFSVKEQQQQQQQQ QEQQQRQQEMQRQQQQQMEQMELIKQQRQQQELLLQQQQQQQQQQQQQQQQQQQQLRH HSTPADTSHYQQQAAPKMLHPRRRLKAAERELRDKEITREILELIKEDSNIQYWKVSA RLAEKGINISPSSVCQKLKSMGIHRRWKPGDKPPMLAISQLKAATVAAAAAAAGLAGV GGSAGLAGNSFGLADDGYEQQQFDMGGHFLSAFTR" misc_feature 788..1048 /gene="LOC108067704" /note="Zinc-finger associated domain (zf-AD); Region: zf-AD; smart00868" /db_xref="CDD:214871" misc_feature 1886..1951 /gene="LOC108067704" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature order(1901..1903,1907..1909,1913..1915,1919..1924, 1931..1936,1943..1945,1991..1993,1997..1999,2009..2014, 2021..2026,2096..2098,2102..2104,2108..2110,2114..2119, 2126..2131,2138..2140) /gene="LOC108067704" /note="putative nucleic acid binding site [nucleotide binding]; other site" /db_xref="CDD:275368" misc_feature 1976..2032 /gene="LOC108067704" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" misc_feature 2081..2140 /gene="LOC108067704" /note="C2H2 Zn finger [structural motif]; Region: C2H2 Zn finger" /db_xref="CDD:275368" polyA_site 6402 /gene="LOC108067704" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgaatggcgg tacaagtgga aatgccatgt tgtaccgcat ttttgttttg gttctcgacg 61 tgaacggacg tgtgtgctcg tgtgatgcgg cgccagttgg cagacattca aggcaactac 121 tttaaaaaaa gcagtaataa atacaatttt acacattcac attccatttt gattctgttg 181 tgtgtgaaaa acttataaga gaaaaacaac aaaaacaacg aaaaccaacg gcaaataaca 241 aaaagtatca acggcaacaa taacaacaac aacaacagtg agcagcatag caaagcagcg 301 aagtcaacgt caaaaccgaa gaagaagaag caagataaat acatagcaat ttcgactaaa 361 taaagtttac caaacgtcgt cggtacaatc ggaacgttcc gttcctgcgt ttcagttctt 421 cctttccgtt cgttccgcgc gctcctctct cgcgtgagag agagtgctgc cacttgttgc 481 cggctcggct tggggacact ctctcttccc attccatcat tccatcgaag cacggatacg 541 ataacgctac cgattgatcc aatccgatcg gatccgatct gttcgatcca catccaccca 601 ctaccggcgg agatttggaa gcagtagacg cctgaaccat tggaagaggc atgcagttga 661 tggccagcgg ttactcctgc agcagctcca tctccttcag atccttcagt tccagttccc 721 tccggtccaa actctcgcga tggagagcga tgaacagcag caggaggttg tgggcggaag 781 tgcaccgtta tgtcgcatct gcatcaccac ccaccatcag cagccgaaca acaacaccaa 841 caacacgaca gcatccccag ccaacctgcc aatgataccc atcttcgggg aggatgcgct 901 ctggcagaag attaccacgc tggccaacgt caagatcagc aagaacgaca ctctaccgca 961 acaggtgtgc gtcgcctgtg ccaagtcggc tatttcggcc tgcgtgttca agaagaagtg 1021 cgaggaggcg gaccattttt accgccagca actgaggctc cagaagatcg agggcgcgga 1081 tccgctggag acgagcgcct ccgccggcga ccaggccaaa agcagcggct gcagcagcgg 1141 cagcgggagc agcagcgcca gcggcagtgg cagcggcagt tcctccagca gcagttcctc 1201 ctccgacgac gaggacgagg acaatgatca ggatcaagag caggatcagg aacaggaact 1261 ggatgaagtg gaggccgggg aggctggcca caagcggctg cagaatggct acagcccggt 1321 tatcaatggc catcgaggtg atggcgttca ggaggaggag ctgatggatg accatcatca 1381 cgcagctggc cacgaagagg aggaacagga tgagcaggat caccatcgca atgggctgga 1441 gttggcggag gtaaatcccg aggatgagga cgatgacgac gtggaggagg taaatccaat 1501 gaaccaccac catcaccacc acgataataa cgacgacgat ggcgaaataa ccggccatgc 1561 cgggcatccc aaggaaccgt tcgacttcaa ctcgattcgc ctgatgcagg agtacatgca 1621 gcatcagatg aacaagttcc ccaatggctc cgccgccggt ggtcacccgg atatggagct 1681 cgatctcgac cagcagcagc atcatcatca tcatcatgat gacgatgacg aggacatgtc 1741 gctgccgctg atacccgaga tcgagttgat cacaccgggc gatgaggcgc cagcggatgc 1801 ctcgaatcac aatgacttgg acttggtcaa tggcgtgggc gtgggtgtgg gcgtggtcca 1861 ggggatgcgg ggaccgggct tccagtgccc ccactgctat cagatcttcg agatgaagca 1921 gatcctcaag gcgcacatgc agagtgtcca tggagcaccg ggaccggtgt acgagtgcag 1981 caactgccgc aagacctatt tctacaagcg tttcctcgag aagcacatac gacgtggtcg 2041 ctgtgtgaag aagcgtcgca atcaaactcg gcccatgcag tgctccgatt gtcatgtcct 2101 cttccccacg ggccaccatt tgggctggca taagcgcacc ggctgcccct cgaaggcggc 2161 caaaatgccc ctgcagcagc ttttcaagca gaacattgtg cagttcaaca atttccccaa 2221 gcggattgcc gccggcggag gaggaggagg aggaggggga gcggcacgca aaccaacggc 2281 tcccgagctg cacatcaaca atcgcaaact gggcttggcc aacaagcgaa agggacgcac 2341 tcgcatcaag ctggacgcca agaagattgc cctggccaag cagttgatac tgcgcgaggc 2401 caccaccacg gtgattgcca acgagctgaa catctcgcgc accttcgcct ggcgcctgcg 2461 caaaagcctg gtcaacggtg tcagtctgca tgagcgcgtc gtggatccct cgcaggagga 2521 gcagcacctg caacagctgc agcagcagca gcatcatcac catcagcagt tgcaattgca 2581 gcagcaggag gaacagcaac agcagcaacg cgaacgggaa caacatcact tgagcagcct 2641 tccctacagc caccttggcc tgggtctcat caaagaggag cggcaggaca gcgaggatga 2701 ggagcagcag cagcagcagc ggcagcatca ccatcactcg ctcggtctgg tggacgagtg 2761 cggagcggat gagattgggg ccgaggaaac ggctggctat atgggcgatg aggatgccgt 2821 gagcggcctg ctccacaatg gaggctacga cccggatccc gattccgatc ccatcgagca 2881 cgatcccttc gagggcaccg agaaccatga gcatcctgcg aacggttcgg tttcgcccgc 2941 agcgaaactt gtgccgccat cgggggttcc ggtaccggtg cctgttcagg tccatgctgc 3001 tgccgccgcc gccgccgccg ctcggagcga tgtggaggtc tacaagcggc tgctggccga 3061 gtcgcagcac tttccccaca tcgtcaacgc ccagcagttg cagatgcagc agcagcaccg 3121 cgagcgggag agggagcagc gggatcgcga gcgggcaagg gaaagggaga gggaaaggga 3181 gcaactgcag cagcagcaga aggtccacaa cggtggaatg ccgatgctca ctcgttatcc 3241 gcccgccgtc atgcacgccc tgcccgtcaa cctgtccctg cgctccatgc ccccccacat 3301 gaatagcaac gagagcaacg gcagctccag cagcaacacg gcggccccag ttcccgttcc 3361 tgttgccggc tcatcggcag ccacctcgac tggcgccacg ccgactggca agaagccccg 3421 caagccgaac gttttcatcg acgacgagaa gtacgccatg gccaagttgt tggtggccca 3481 gaactcctcc accatggaga tagccagggc cctcaatgta tcccaaatga cggcctggaa 3541 ggtgcgcgat gccattctca agggagtgcc gctctcctat cgcaacaagc gatccgatgg 3601 caggcattcg gaggagttta gcgtcaagga gcagcagcag caacagcagc aacaacagga 3661 gcaacagcaa cgccaacagg agatgcagcg acagcagcaa cagcaaatgg aacaaatgga 3721 gctaatcaaa cagcagcgtc agcaacagga gttgctactc cagcagcagc agcaacagca 3781 acagcagcag caacaacagc agcagcagca gcaacaacaa ctgcgtcatc acagcacacc 3841 ggcggacaca tcacactatc agcaacaggc ggcgccaaag atgctgcatc ctcgccgccg 3901 cctaaaagca gcggaacgcg agctgcgcga caaggagatc acacgcgaaa tactcgagct 3961 gatcaaggag gacagcaata tacagtactg gaaggtgtcg gctcgcctgg ccgagaaggg 4021 catcaatata tcgccctcgt ccgtctgcca gaagctcaag tcgatgggca tccaccggcg 4081 ctggaagccg ggcgacaagc cacccatgct ggcgataagt cagctcaaag cggccactgt 4141 ggcggccgca gcggcggcag ctggcctggc cggcgtcggc ggaagcgccg gattggccgg 4201 caacagcttt ggcctggcag acgacggcta cgagcagcag cagttcgaca tgggcgggca 4261 ctttctcagt gcctttacgc gctagaccag aagtcctgcc catctgggcc tacatttaaa 4321 tactacagtg gattgtaggc atcgtaggca tcatttgact gggaaattgt aggtctaaag 4381 agctgagttt taagttattg aagcctttga gggttgattt tggtttaaga tacatttctt 4441 ttatgaacaa aattataagt agccaatata aaaataattc tactcggcag ctgtttagtt 4501 ttatgttgaa tgtcattgag aaattcattg cagatctacc atttcccagg cgaaatgcct 4561 agaaatttgc ccacaattac cactgtgagt ttaacatata tacatttttg tttttcgagc 4621 caccctaatc catatgcata gaccagcaca gcaacaacaa ggtgtatttt ttatatagta 4681 tttgaaagag agagagcgcg cttgaaatgt atttgtattt gtaatcgtta tgagatagca 4741 tatattgtat gattctgtat tagatttata tatccaatat atatgctaag cattcctaga 4801 atgtcacaca cacacacaca aagaaaatga aaaagaaaaa cgcccattcc aagcgaggaa 4861 atgatttcct ttctttaagt tcagtagctt ccttttcctc ttcctccatc cacacacaca 4921 cacacaaaca cacttagctg ataatgtaat aatttaatta acatatttat tgatcgtatg 4981 tccttgtgag tgtgtgtgtg tgcgctttaa ctgagaaatg tatttaaaga ttttcaccat 5041 ttttaattta tttattttac tcacgcatac acacacacac acatataagc aattattcag 5101 tactgaactt taatttagtt aaattaatgc atcaaacgaa gaaataacaa tcagaacaaa 5161 gcaaacggaa gcagaacaaa cagcagctag agagaaagtt aagaaagcta gcaacataag 5221 tgcaattata aactacatgt gtaaacctaa agaaccagaa gaatgtaaaa tgttttacgt 5281 gtgaccgaaa tagaagatag gagagcgaga gaaggggaga aagagaggga aaattgtcta 5341 tccaatttaa gaccttagca ccactgaaca ttttagaacc aactttcata tcttcagata 5401 tcctaaacta aaagatatct tcattttaaa acgctaactg atgaaaaact tgtgtttttt 5461 ggttaaaagt gtagaaagaa atgttcaaat ttaaaataag tttaggtcaa ttaaaacaac 5521 atttagtttt tactttagaa cgacttttat acattcccaa agacatacca aaattttgtt 5581 tagcactata aacaggctga aaatcgaaac atcacccaca aaaagtttgt tttttgtgtg 5641 tgtttacagt ggtgttgagc cattagttaa taactttgat tgggagaacc aatttaaggt 5701 ttacacttca ctccccaact ttcctcctct tctttctcct ggtcgttttc catatagaca 5761 gctactccga atccatcctc ccaaccaagc cccaatttat gtaagaaagc tatggaaaca 5821 aggcaaacga tcaatttttg aaaacgtcgt agcaaattgt tagttaaaaa tgagaagaaa 5881 actaaataac acaaaagatc aaaagaaaaa agatggaaaa atatgaagac aagctgagga 5941 ctcagaactg tatttattta cagtcaattt taggaacatt tattttatta ttattatttt 6001 tttgttgttg tggatgaaat tctattcgtc tgcgatttat ttttgtatag cttttaaggt 6061 ccgaagttag agcaaaagag atagcaagag agagcgagtg aaggttgata tagtattttt 6121 tttatatttt tgtacaattt gaaattgtaa ctgcttttta tcaatcaatc aatgaatgat 6181 tccctccctc caccaaccca cacacacaca catacacacg catactgtgc aaagtatttt 6241 ctatattcat tacatataaa tatatccata tataactaaa ctaaatttat aaaatagttt 6301 ttttttgttt ttttttttta catcatatat atatttagcc gcagcttata aaatagattt 6361 aaaaataaaa aatgattaca atttttttgt atgaaatgca aa