PREDICTED: Drosophila takahashii Fumarase 1 (Fum1), transcript

LOCUS       XM_017156809            1696 bp    mRNA    linear   INV 09-DEC-2024
            variant X1, mRNA.
ACCESSION   XM_017156809
VERSION     XM_017156809.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017156809.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1696
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1696
                     /gene="Fum1"
                     /note="Fumarase 1; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 31 Proteins"
                     /db_xref="GeneID:108067669"
     CDS             106..1593
                     /gene="Fum1"
                     /codon_start=1
                     /product="fumarate hydratase, mitochondrial isoform X1"
                     /protein_id="XP_017012298.2"
                     /db_xref="GeneID:108067669"
                     /translation="MVLPLLQRSSLRGVQQITKPWAAIGSLRLASQEFRVESDTFGEL
                     KVPADKYYGAQTMRSQINFPIGGATERMPKPVVQAMGILKKAAAEVNKEFGLDSKVSE
                     AISKAADDVISGKLYADHFPLVIWQTGSGTQSNMNVNEVISNRAIELLGGKLGSKTPV
                     HPNDHVNKSQSSNDTFPTAIHISVALQLNNNLKPAIKTLHDALRAKSEEFKDIIKIGR
                     THTMDAVPLTLGQEFSGYAQQLAYAQERIDACLPRVYELALGGTAVGTGLNTRKGFAE
                     KCAAKIAELTNLPFVTAPNKFEALAARDAMVEVHGVLNTIAVSLMKIANDIRFLGSGP
                     RCGLGELSLPENEPGSSIMPGKVNPTQCESLTMLSAQVMGNQVAVTIGGSNGHFELNV
                     FKPLIVSNVLRSIRLLSDGSRTFTANCVNGIQANRENIAKIMNESLMLVTALNPHIGY
                     DKAAKIAKTAHKNGTTLKEEAINLGYLTEEQFNDWVRPEQMLGPK"
     misc_feature    196..1584
                     /gene="Fum1"
                     /note="Fumarate hydratase class II [Energy production and
                     conversion]; Region: FumC; COG0114"
                     /db_xref="CDD:439884"
     polyA_site      1696
                     /gene="Fum1"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gttgttgttt tttgttgttg ttgtggtggg ctcgtccgcg aaagatcact tggcaaactt
       61 aatttattta ttaactaccg atccgactaa gaaataagca taaagatggt gctaccgtta
      121 ttgcagcgtt ccagccttcg cggcgttcag cagataacga aaccatgggc tgccatcgga
      181 agtttgcgtc tggcctccca ggaatttcgc gtggagagcg acacctttgg tgaactgaag
      241 gttccggcgg ataaatacta tggcgcccag acgatgcgat cccagatcaa tttccccatc
      301 ggcggagcca ccgaacggat gcccaaaccc gtcgtccagg cgatgggcat cctgaagaag
      361 gccgccgccg aggtgaacaa ggagttcgga ctggacagca aagtgagcga ggcgatctcg
      421 aaggcagcgg acgatgtgat ctccggcaag ctgtacgccg accacttccc gctggtcatc
      481 tggcagacgg gttccggcac ccagagcaac atgaatgtga acgaggtaat cagcaatcgc
      541 gccatcgagc tgctgggcgg caagctgggc tccaagacgc ccgtgcatcc caacgaccat
      601 gtgaacaagt cgcagagctc caacgacacc ttccccacgg ccatccacat ttcggtggcc
      661 ctgcagctga acaacaacct caagccggcg atcaagacgc tgcacgatgc gctgcgcgcc
      721 aagtcggagg agttcaagga catcatcaag atcgggcgca cgcacacgat ggacgcggtg
      781 cccctgactt tgggccagga gttcagcggc tatgcccagc agctggccta cgcccaggag
      841 cgcatcgatg cctgcctgcc gagggtctac gagctggcct tgggcggcac tgcggtggga
      901 acgggtctga atacgcgcaa gggcttcgct gagaagtgcg cggccaagat tgccgaactc
      961 accaacctgc ccttcgtgac ggcgccgaat aagttcgagg ctctggccgc cagggatgcc
     1021 atggtggagg tccatggagt gctgaacacc atcgccgtga gcctgatgaa gatcgccaac
     1081 gatatccgct tcctgggctc cggtccgcgt tgcggtttgg gcgaactgtc gctgccggag
     1141 aacgaaccgg gcagctccat catgcccggc aaggtgaatc ccacgcagtg cgagtcgctg
     1201 accatgctct ccgcccaggt gatgggcaac caggtggcgg tgaccatcgg cggctccaac
     1261 gggcacttcg agctgaacgt cttcaagccg ctgatcgtgt ccaatgtgct gcgctccatt
     1321 cggctgttgt ctgatggcag ccgtaccttc actgccaact gcgtgaacgg cattcaggcc
     1381 aatcgcgaga acattgccaa gatcatgaac gaatccctga tgctggtgac ggccttgaat
     1441 ccgcacattg gctacgacaa ggcggccaag atcgccaaga cggcgcacaa gaacggaacg
     1501 acgctcaagg aggaggccat caacctgggc tacctcaccg aggagcagtt caacgactgg
     1561 gtgcggcccg agcagatgct gggacccaag tagtaggcca tctgtcaacc atttcatcta
     1621 gcctgtcggg cttaagttcg ttcgtttgtc aagagatcag agatcaatca ataataaccg
     1681 aaaatgctga agcaaa