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LOCUS XM_017156560 7047 bp mRNA linear INV 09-DEC-2024 variant X5, mRNA. ACCESSION XM_017156560 VERSION XM_017156560.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017156560.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7047 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7047 /gene="tyf" /note="twenty-four; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins" /db_xref="GeneID:108067516" CDS 444..5831 /gene="tyf" /codon_start=1 /product="pneumococcal serine-rich repeat protein isoform X2" /protein_id="XP_017012049.2" /db_xref="GeneID:108067516" /translation="MNNEQTPSSSDTSADRVGGSGSGSGSLSGTGSESAIKLPIPDTP IVSIAAGTMSESTTTTTATKTTPTPFPQEQLITMMSDHVAQLDEASVSQEAKGAVAAT NHVATKKSSSPSNSHSHATNHAAAAEAGKDSGAAAAAAGGDTFSTVFAMLNDTQGEEL SRPNRRVLQYGATAKGKTQDDQNVGKRQKKKKTKYDTWEDSDFNDLDDASLKKLLEEA YWYRNPGDRKNKSERFLQMLKKAEYDEEISYRAIKSCLTLNPSALASSAAAAAAGSSG GGSSSAGHNSGYSSTSTSTNHRSTDPGQQRHKQGGSLQDLVEAAHRSELATTSAAAAA ATAAASQRFNCDYQLSGRSNRRQQQQQQQHNQNATSSATASASKKIKNSSVSGRQREG GSLPSSVNFEPAAAMDAKQQQKQQQQEGSGSSAAGGSKNHSCSSLPSHLGDRDPEAGI QFDMDEDEATGGVAISGVPHDYLLEQLEPQNPSMTFLLDALSGQQPKQPKQPAEAREG GAAKEFLIDDPLHFSVLEVSARSQLQQQAHYLAALTGQFGLGLEEQKRKVEAGYVSLN DNYTACSSVYGGGAGSPAAIEGSKPSTSSATSSGGSNCGGGASSSSDALSGELRPAKI GRMVAGAASTAAASMGGKATTRQLDENGNALSDGFGGATGVATSSNGNQFTALITTTV GGSATTSSSSAAHRQNSVSTLLSTGTNTTTTAMAAAAVAASYSQLQQAPSGGAVAAGP GIGIGIQQNPTKQKAKKKSQQERNTTTVDVESVAGYRGNDPVEQLVKYIENDVNGGGG NTAAGQRKKERKKQNKLKKSNSLEELRSCSKMEVDDLKRQSATTEMMRQKKGPNNAGP SGTSSSAAAAGGKHNSASVADINKNCNKEQQQVQVQVRNSSSNPGGTQQRKGERRSWG TEELQYLGDRQEMSAAWSEPESLAQKPLTSLPALTRMSELDALNTVLSETAEFHVVTK KKKPKKQRAVTMDDAAVAVAAAATTGGNLQRMQQITKSASSNMMSQRMHYYTSSNNNG GGAGVATYKQQQEHYQAQQGQHHHHHHHHHHHHHHHGGSAVSNQVDGSRRKSTSSMPP SEKSDSSDLDSVHSLPIQTGKKKSLGGGGGNNKQRAAQAASQRQAKQNNSSPAPISYA DIARNKQEALNQAAASDTELELKGSKSKSRPDFPELPAGNQQQQQPIVVSNQNTAPSS SSSISYSQSLNATPASSSSDAESLNSPELQVVACSLATSTSSCGSGSSSSSSSASTSS TASSSASPPALQKSKSVEHDASYSCTSSNLDQQYPALEKTVKRHSTNNVSVAVASSSA SLYNFAAAAKQQLAEKAAAATTTTSTAVSVPAAPGSSSTPSPAVKLKAKPKELSPSSS SSSKKPPKEEATSSSSKATISTSTTTTTTQKTTAATQTEGAKKLSSSSCIAKGAGAVL EATAGRRAVIILNDDREAGRSNNEFIFGDFNEDELKLFDDNLEDEVQAANKQQQTEAE DEAEDADQTEVESREKESQQLNDSGAASDAVNSSASLDMLSISAETGQSSPSAASLIN SSTPSGSSSASASTSTSSSSISSSSSSGSNGNGAACLASISGMLGQSVANQSGDSGIY AAANTSIKEQVNNFLSKASSSEETLPSTNSISMQQLETCNDIEAAIIAAARAAAAARS TSCSRSNSQEQEQQAKTIRSNSNTNSNPNPNPETKVALPVFMNYNDDDEEDDESLQEL SFMADLKDAAATTSAEAEAQEVTVLPPPPPSRPAMMTNTELIVDYIANTWNAIANSKY VTYYNEREQET" polyA_site 7047 /gene="tyf" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 ggcgcatacc tgcgcccgtg tgtgtgtgcc tgtgcctgtg tgtgtgtgcg tgtgagtgcg 61 cagaaagtta tacagctgta ttcgactggc gtatttatca ataaataact actgtgatcg 121 ccggaaaact ccaattactg gggacctacg taaatgccac ggccagagat tcgagattcg 181 cgattcgaga ttcccagtga cgacaggcct gtcaagtgca gcaggagtcc cgagtgatac 241 gccataggtg ggcccccctg taactcacag tcaggaatcc gggaatccag gaatccagga 301 atccaggcgg cagagcactt gcagccgcgg tggcgaccac acggcggctg ggcagctggg 361 cttcctagga aaaccgagga gaggcaacag ttaattcgag caattcgaat ggcatttgtt 421 tgtttccacc aaacgaccaa aagatgaaca atgaacaaac gccgtcatca tcggacacat 481 cggcggatcg tgtgggagga tctggatctg gatcaggttc tttatctggt actggatccg 541 agtcagctat caagctgccc attccggaca cgcccatcgt ctcgattgcc gctgggacga 601 tgagcgagag caccacgacg accaccgcca ccaagacgac gccgacgccg ttcccgcagg 661 agcagctcat caccatgatg tcggaccatg tggcgcaact tgacgaggct tctgttagcc 721 aggaggccaa gggagcagtg gcggctacca accatgtagc aaccaagaag tcatcatccc 781 ccagtaatag ccatagccac gctactaacc acgctgcagc ggcagaagct ggcaaagatt 841 caggagcagc agcagcagca gcaggagggg atacattctc gaccgtcttc gccatgctga 901 acgatacgca aggcgaagag ctgtcgcgac caaaccgcag agtcctccaa tacggggcca 961 ctgccaaggg caagacccag gacgatcaga atgtcggcaa gcgacagaag aagaaaaaga 1021 caaaatacga tacctgggaa gatagcgatt ttaatgatct cgacgacgca tcattgaaga 1081 aacttctcga ggaggcatat tggtatcgaa atcctggcga caggaagaac aagagcgagc 1141 gatttctgca aatgctcaaa aaggctgagt acgacgagga gatctcttat cgtgccatca 1201 aatcctgcct cacactcaac ccatccgcac tagcgtccag tgcagcagcg gcggcagcag 1261 gctcgagcgg cgggggcagc agcagtgcag ggcacaacag cggctacagc tccacctcca 1321 cctccaccaa tcaccggtcg acggatcccg gccagcagcg gcacaagcag ggcggctccc 1381 tgcaggatct cgtcgaggcg gcgcaccgca gtgagctggc caccacctcg gcggcggcgg 1441 ctgcagcgac ggcggcggca agccaacgtt tcaactgtga ttaccagctg agtggccgct 1501 ccaatcgccg ccagcagcag cagcagcagc agcacaacca aaacgccacc tcctccgcaa 1561 ctgcatccgc atctaagaag atcaagaact catccgtctc gggccggcag cgcgaaggag 1621 gcagcctgcc cagcagcgtt aactttgagc cggcagctgc catggatgcc aagcagcagc 1681 agaagcagca gcagcaggag ggatccggat catcggcagc aggtggcagc aagaaccaca 1741 gctgcagcag cctgcccagc catctgggcg atcgggatcc cgaggcgggc atccagttcg 1801 acatggacga ggacgaggcg acgggcggcg tcgccattag cggcgtccca cacgactacc 1861 tgttggagca attggagccc cagaatccct cgatgacgtt cctgctcgac gccctcagtg 1921 gccagcagcc caagcagccg aagcagccgg cggaggcccg ggaaggcggt gccgccaaag 1981 agttcctaat cgacgacccg ctgcacttct ccgtcctgga ggtttcggcc aggagccagc 2041 tgcagcagca ggcccactat ctggccgccc taaccgggca attcggtctc gggctggagg 2101 agcagaagcg caaggtggag gccggctatg tgtcgctcaa cgacaactac acggcctgct 2161 cctcggttta cggcggcggc gctggttcgc cagctgccat cgagggcagc aagccctcga 2221 cttcctccgc gacctcttcc ggcggcagca actgcggcgg cggcgcctcc tcctcctccg 2281 acgcgctctc cggcgagctg cgtcccgcga agattggacg catggtcgct ggagcagcgt 2341 cgacggcagc tgcgtcgatg ggtggcaagg ccacaacgcg ccagctggac gagaatggca 2401 atgccttgag cgatggcttt ggaggagcca ctggagtggc caccagcagc aatggaaacc 2461 agttcacggc cttgataacc accacagtgg gcggcagtgc caccacctcc tcctcgtcgg 2521 ccgcccaccg tcagaatagc gtgtccacgc tgctctccac gggcacgaac accaccacca 2581 cggccatggc agccgcagcg gtggctgcat cctacagcca gctgcaacag gcgcccagcg 2641 gtggagctgt tgctgccggg ccgggaatag gcattggcat ccagcagaat cccaccaagc 2701 agaaggccaa gaagaagtcg cagcaggaga ggaatacgac caccgtggac gtggagtcgg 2761 tggccggcta tcggggcaac gatcccgtcg agcagctggt caagtacatc gagaacgatg 2821 tgaatggcgg aggcgggaac actgcagcgg ggcagcgcaa gaaggagcgc aagaagcaga 2881 acaagctcaa gaagagcaac tcgctggagg agctgcgcag ctgctcgaaa atggaggtgg 2941 acgatttgaa gcgccagtcg gcgaccacgg agatgatgcg tcagaagaag ggcccaaata 3001 atgctggccc aagcggcact tcctcctccg ccgccgccgc cggtggcaag cacaattcgg 3061 cctccgtggc ggacataaac aagaattgca acaaggagca gcagcaggtg caggtgcagg 3121 tgcggaattc gagcagtaat ccgggcggaa cgcagcagcg gaagggcgag cggcgatcgt 3181 ggggcaccga ggagctgcag tacctgggcg accgccagga aatgtctgca gcctggtcgg 3241 aacccgaatc cctggcccag aagccactca cttcgctgcc cgccttaacg cgcatgtccg 3301 agctggacgc cctgaacact gtgctctccg aaacggccga gttccatgtg gtgaccaaga 3361 agaagaaacc aaagaagcaa cgcgccgtca ccatggacga tgcggcggtg gcggtggcgg 3421 cggcggccac cacgggtggc aatttgcagc gcatgcagca gatcaccaag tcggcctcct 3481 cgaacatgat gtcccagcgg atgcactact acaccagtag caacaacaac ggaggaggag 3541 caggagtagc tacctacaag cagcagcagg agcactacca ggcgcagcag ggccagcacc 3601 atcatcatca tcatcatcac caccaccatc atcaccatca tggcggctcg gcggtttcca 3661 atcaggtgga tggatcgcgt cgcaagtcca cctcctccat gccgccgtcg gagaagtccg 3721 actccagtga tctcgactcg gtccactcgc tgcccatcca gacgggcaag aagaagagcc 3781 tgggcggcgg cggcggcaac aacaagcagc gggcggcgca ggccgccagt cagcggcagg 3841 cgaagcaaaa taatagctca ccggcgccca tttcgtatgc ggatattgcg cgcaacaagc 3901 aggaggcttt gaaccaggcc gcggccagcg acacggaact ggagctcaag ggcagcaagt 3961 ccaagtcgcg gcccgacttt ccagagctgc cagcagggaa tcagcagcag cagcaaccga 4021 tcgttgtcag caatcaaaat acggcgccgt cctcgtccag ttcgattagc tactcgcaga 4081 gcctgaatgc cacgcccgcc agcagcagca gcgatgcgga gtcgctcaac tctccagagc 4141 tccaagtggt agcctgcagc ctggccacgt ccacgagcag ctgcggcagc ggcagcagca 4201 gcagcagttc cagcgccagc acctcctcca cagcctcctc ctccgcctcg ccgcccgcgc 4261 tgcagaagtc gaagagcgtg gagcacgacg ccagctacag ctgcacaagc agcaacctgg 4321 accagcagta tccggcgctg gagaagaccg tcaagcggca cagcaccaac aatgtgtccg 4381 tggccgtcgc ctcctcctcg gcttcgctgt acaactttgc agcggcagcc aagcagcagc 4441 tggcggagaa agccgctgca gcaacaacta ctacctcaac tgcagtttca gttccagctg 4501 ctcctggttc gtcctcgact ccctcgcctg ctgtcaagtt gaaggccaag ccaaaggagc 4561 tgtctcccag cagcagcagc agcagcaaga agcctcctaa agaggaggcg acgtcgtctt 4621 cgtccaaggc gaccattagc accagcacca cgaccacgac cacgcaaaag accacggctg 4681 ccacgcagac cgagggagcc aagaagctca gcagcagtag ctgcattgcc aagggagccg 4741 gtgccgtttt ggaggccacc gccggcagga gggcggtgat tatactcaac gatgatcgcg 4801 aggcgggcag gagcaacaac gagttcattt tcggggactt taacgaggat gagctgaagc 4861 tgttcgacga taatttagag gatgaagtgc aggccgcgaa taagcagcag caaacggagg 4921 cggaagatga ggcggaagat gcagatcaaa cagaagtgga gagccgggaa aaggaatcgc 4981 agcagctgaa tgattcgggg gccgcttcag atgcagtcaa cagctcggcc agcctggata 5041 tgctctcgat ttcggcggag acgggacaat cgtcgccgag cgccgccagt ctgattaact 5101 cgtccacgcc ctcgggctct tcgtccgcgt cggccagcac ctccacctcg tcgtcctcga 5161 tttcgtcctc ctcctcctcg ggcagcaacg gcaacggcgc cgcctgtctg gcctccattt 5221 cgggcatgct cggccaatca gtggccaatc agtcggggga tagcggcatc tatgccgcag 5281 ccaatacgtc catcaaggag caggtcaaca atttcctcag caaggcgagc agcagcgagg 5341 agacgctgcc gagcaccaac tcgatttcga tgcagcaact ggagacgtgc aacgacattg 5401 aggcggccat catagccgcc gcccgtgcgg cagccgctgc ccggagcacc agctgcagtc 5461 gcagcaactc gcaggagcag gagcagcagg ccaagacaat taggtcgaat tcaaatacaa 5521 attcaaatcc caatcccaat ccggagacga aagtagccct gcccgtgttt atgaactaca 5581 acgacgacga cgaagaggac gacgagagct tgcaggaact gagcttcatg gcggacctta 5641 aggatgctgc ggccacgacg tccgcggagg cggaggctca ggaggttact gtgctgccgc 5701 cgccgccgcc ctcgcgaccg gcgatgatga ccaacacgga actgattgtc gactacatcg 5761 ccaacacctg gaatgccatt gccaatagca agtatgtcac atactacaac gagcgggagc 5821 aggagaccta gaaatcagat cagcaacagc agcagcagca gcaacagcaa caccaatcgc 5881 aatagcaacg tcagcaatat cggcagctga gaacaggaga gaggagttta gttcgaattg 5941 catgttccga tgtttatatt tcactttttt tttttttact ttgtgctggg ccatcgttta 6001 tacatctacc gatatcgtac atacactata aataattgct ataacaatac gcttttatgc 6061 taattaatgt aacgaatcaa tggattcgag cgcggcagcg gaggatcagg attgtcagga 6121 ttgcaggatt gtcaggattg tcagggtgtg tctgtgtttc cagtatgaat gcgagcgagt 6181 gcctgagatt aggagtatag gatctattta gatgcaggtc gataatcgcc aggagaagat 6241 cgaacacgaa ccctcaaacc gttcgtacag ctgtgaataa gaagggaaac attactagga 6301 aagaggaaat tagaagagaa agtaatcaga agatcagagg atcgaaaaca agctacaagt 6361 ggatatttat ttaacgttag ttgaccgcga tttaacgatg cgatgcatag tgatgttcaa 6421 tcaagcattt ggatctgctt ttgttaattt acaaccttct ggctccttaa aacgcaacgt 6481 tttaccatta ctattactat tactgtactt taattattat tactactatt acgcaagcgt 6541 ttttttttgt ctttgttttt taaacgcccc acgagatcat cggagggcgt gctatattgc 6601 aaaagcagaa attaaaacta atcctagttc ttagacagag tcaacgtcgc gtgtacatat 6661 atatatgaga ccagaagttt aggaggcagt tcgaccattg agtttatgtg ttagagagag 6721 gaaagaaaga aagaaagaaa gccccacgga aaatatttga tatgtgtgtg tatgataacg 6781 actatttaaa gtaaactatg taaggcccgc tccttagctc cggctagcca taaataagcc 6841 tcatgaggaa agtatgttag acagcataac cgcaaaacag aaaacagaaa accacaaaaa 6901 accagcaaaa acactaaaaa ctattatgca cttacgaaaa atgccgccgt ttagcaggga 6961 gagcctcaga aggtctctcc gaagggtaaa aaataaaaga aggatagtag atatcgtaac 7021 cattaaaaca gaaaatcgta aaaaaac