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LOCUS XM_017156551 4957 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017156551 VERSION XM_017156551.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017156551.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4957 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4957 /gene="Fas2" /note="fasciclin 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins" /db_xref="GeneID:108067511" CDS 414..3047 /gene="Fas2" /codon_start=1 /product="fasciclin-2 isoform X2" /protein_id="XP_017012040.2" /db_xref="GeneID:108067511" /translation="MGELRKSLPLNSVGVFLALLLCSCSLIELCQAQSPILEIYPKQE VQRKPVGKPLILTCRPTVPEPSLVADLQWKDNRNNTILPKPNGRNQPPMYTETLPGES LALMITSLSVEMGGKYYCTASYANTEILEKGVTIKTYVAITWTNAPENQYPTLGQDYV VMCEVKADPNPTIDWLRNGDPIRTTNDKYVVQTNGLLIRNVQESDEGIYTCRAAVIET GELLERTIRVEVFIQPVIVSLPETLNAVEGKPFAANCTARGKPVPEISWIRDATQLNV ATADRFQVNPQTGLVTISSVTQEDYGTYTCLAKNKAGVVDQKTKLNVLVRPQIYELYN VTGARTKEIAITCRARGRPAPTITFRRWGSEEEFKTGQQFDDPRIILEPNYDQERGES TGTLRIANADRTDDGLYQCIARNSEDKAYKTGHITVEFAPDFSHMKELPPVFSWEQRK ANLSCLAMGIPNATIEWHWNGRKIKDLYDTNLKIVGTGPRSDLIVHPVTRQYYSGYKC IATNIHGTAEHDMQLKEARVPDFVSEAKPSQLTATTMTFDIRGPPTELGLPILAFSVQ YKEALNPDWSTAYNRSWSPDSPYIVEGLRPQTEYSFRFAARNQVGLGNWGVNQQQSTP RRSAPEEPKPLHQPEQHDTEEPVVVSTYSDHFELRWGVPADNGEPIDKYQIKYCPGVK ISGTWTELEDSCNTVEVVETTSYEMTQLVGNTYYRIELKAHNAIGYSSPASIIMKTTR GLDVIQVADRQVFSSAAIVGIALGGVLLLLFVVDFLCCITVHMGVMATMCRKAKRSPS EIDDEAKLGSGQLVKEPPPSPLPLPPPVKLGGSPMTSPLDEKEPLRTPTGSIKQNSTI EFDGRFVHSRSGEIIGKNSAV" misc_feature 522..788 /gene="Fas2" /note="Immunoglobulin domain; Region: Ig; cl11960" /db_xref="CDD:472250" misc_feature 573..587 /gene="Fas2" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409404" misc_feature 621..635 /gene="Fas2" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409404" misc_feature 720..734 /gene="Fas2" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409404" misc_feature 762..779 /gene="Fas2" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409404" misc_feature 840..1052 /gene="Fas2" /note="Immunoglobulin domain; Region: Ig; cl11960" /db_xref="CDD:472250" misc_feature 891..902 /gene="Fas2" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409570" misc_feature 927..941 /gene="Fas2" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409570" misc_feature 993..1007 /gene="Fas2" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409570" misc_feature 1035..1052 /gene="Fas2" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409570" misc_feature 1110..1382 /gene="Fas2" /note="Fourth Ig-like domain from smooth muscle myosin light chain kinase and similar domains; a member of the I-set of IgSF domains; Region: IgI_4_MYLK-like; cd20976" /db_xref="CDD:409568" misc_feature 1110..1121 /gene="Fas2" /note="Ig strand A [structural motif]; Region: Ig strand A" /db_xref="CDD:409568" misc_feature 1137..1148 /gene="Fas2" /note="Ig strand A' [structural motif]; Region: Ig strand A'" /db_xref="CDD:409568" misc_feature 1161..1187 /gene="Fas2" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409568" misc_feature 1203..1217 /gene="Fas2" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409568" misc_feature 1224..1235 /gene="Fas2" /note="Ig strand C' [structural motif]; Region: Ig strand C'" /db_xref="CDD:409568" misc_feature 1254..1268 /gene="Fas2" /note="Ig strand D [structural motif]; Region: Ig strand D" /db_xref="CDD:409568" misc_feature 1278..1295 /gene="Fas2" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409568" misc_feature 1317..1343 /gene="Fas2" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409568" misc_feature 1350..1382 /gene="Fas2" /note="Ig strand G [structural motif]; Region: Ig strand G" /db_xref="CDD:409568" misc_feature 1413..1697 /gene="Fas2" /note="Immunoglobulin like; Region: IG_like; smart00410" /db_xref="CDD:214653" misc_feature 1479..1532 /gene="Fas2" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 1593..1607 /gene="Fas2" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409353" misc_feature 1635..1652 /gene="Fas2" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" misc_feature 1764..1970 /gene="Fas2" /note="Immunoglobulin domain; Region: Ig; cd00096" /db_xref="CDD:409353" misc_feature 1764..1778 /gene="Fas2" /note="Ig strand B [structural motif]; Region: Ig strand B" /db_xref="CDD:409353" misc_feature 1803..1817 /gene="Fas2" /note="Ig strand C [structural motif]; Region: Ig strand C" /db_xref="CDD:409353" misc_feature 1884..1898 /gene="Fas2" /note="Ig strand E [structural motif]; Region: Ig strand E" /db_xref="CDD:409353" misc_feature 1926..1943 /gene="Fas2" /note="Ig strand F [structural motif]; Region: Ig strand F" /db_xref="CDD:409353" misc_feature 1998..2282 /gene="Fas2" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(1998..2000,2199..2201,2244..2246) /gene="Fas2" /note="Interdomain contacts [active]" /db_xref="CDD:238020" misc_feature order(2247..2252,2256..2261) /gene="Fas2" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" misc_feature 2343..2630 /gene="Fas2" /note="Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all...; Region: FN3; cd00063" /db_xref="CDD:238020" misc_feature order(2595..2600,2604..2609) /gene="Fas2" /note="Cytokine receptor motif [active]" /db_xref="CDD:238020" polyA_site 4957 /gene="Fas2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcgttcagtt acgtttcgac ggccaacgcg tcgagttgca acttttccgc ctgaaaaata 61 aaaatagcca ctggattgga agacagaact cagttctccc actctctcgc gctctcttca 121 ctgtctgtgt taacggtcgt ggcgcgtcgc gtgcgtgtgt gttagtgtgc cagttaaaca 181 atgagaaatt gattcacaca ccaaaacagc taaacaaaaa caccaaaaga cgaaaagtgt 241 taaccaaaaa aaataaataa tttgtgcaat cgcaaggaac gaaaagagac tacaattttt 301 taaacatttt tttcgtgtgc aaccgtaaac caaaccaaag aagctgaaaa gagagcaatc 361 aatttgcgag cggggaaaac tactactaat actgcaaaaa aaaagcgata aaaatgggtg 421 aactgcgaaa atcgctgccg ctgaattcgg tcggcgtctt tttggcgctg ctcctctgca 481 gctgctcttt aatagaactg tgccaggctc agtcgcccat cctggagatt taccccaaac 541 aagaggtgca gcgcaagcca gttggcaagc ccctgattct cacctgccga cccacagttc 601 ccgagccctc gctggtcgcc gatctgcaat ggaaggataa ccggaacaac accatcctgc 661 ccaagccgaa tggacgcaac cagccgccga tgtacacgga aacgctgccc ggcgaaagtt 721 tggccctgat gattacctcg ctgtcggtgg aaatgggcgg caagtactac tgcaccgcct 781 cctatgcaaa taccgagatc ctcgagaagg gcgtcacaat taaaacttac gtggccatta 841 cctggacaaa tgcccccgag aatcagtatc ccaccttggg ccaggattac gtggtgatgt 901 gtgaggttaa ggccgatccc aatccgacaa tcgactggct gcgcaacgga gatccgatcc 961 gcaccaccaa cgacaagtat gtggtgcaaa cgaacggcct gctgatccgc aatgtccagg 1021 agagtgacga aggcatctac acctgccggg cggcggtgat cgagacgggc gagctgctgg 1081 agcgcaccat tcgcgtggag gtcttcatcc agccggtgat tgtatcgctc ccggagactc 1141 tcaacgcggt cgagggcaaa ccctttgcgg ccaactgcac ggcgaggggc aaaccggtgc 1201 cggagatcag ctggattcgg gatgcgaccc aattgaacgt ggccaccgcc gatcgcttcc 1261 aggtgaatcc ccagacgggt cttgtgacca tcagttcggt tacccaggag gactacggca 1321 cctacacctg cttggcgaag aacaaggccg gcgtggttga ccagaagacc aagctgaatg 1381 tcctggtgcg tccgcagatc tacgaactgt acaatgtgac cggtgccagg accaaggaga 1441 tcgccatcac ctgccgcgcc cgcggacgtc cggcaccgac gatcaccttc cggcgttggg 1501 gcagcgagga ggagttcaag accggccagc agttcgacga tccccgtatt attttggagc 1561 ccaactacga ccaggagcgc ggcgagagca ccggcaccct gcgcatcgcc aatgccgatc 1621 gcaccgacga cggactgtac cagtgcattg cccggaattc ggaggacaag gcctacaaga 1681 ccggacacat caccgtcgag ttcgcccccg acttcagcca catgaaggag ctgccgccgg 1741 tcttctcgtg ggagcagcgc aaggccaatc tcagctgcct ggccatgggc atcccgaatg 1801 ccaccatcga atggcactgg aacggtcgca agatcaagga tctgtacgat accaatctga 1861 agatcgtggg cacgggacct cgcagcgatc tgattgtcca tccggtgacg aggcagtact 1921 actcgggcta caagtgcatt gccacgaata tccacggaac cgccgagcat gatatgcagc 1981 tgaaggaggc acgtgtccct gattttgtgt ccgaggctaa gcccagccaa ctgaccgcca 2041 ccacgatgac cttcgacatc cgaggcccgc ccaccgaact gggtctgccc attctggcgt 2101 tcagtgtgca gtacaaggag gccctcaatc cggactggtc gacggcctac aaccgcagct 2161 ggtcgcccga ttcgccgtac attgtggagg gactgcgacc gcagacggag tacagcttcc 2221 gcttcgccgc ccgcaaccag gtgggactgg gcaactgggg cgtcaaccag cagcagtcga 2281 cgccacgccg ctcggctccc gaggagccca agccactgca tcagcccgag cagcacgaca 2341 ccgaggagcc ggtggtcgtc tcgacctact ccgatcactt cgagctgcgc tggggggtgc 2401 cggccgacaa tggagagccc atcgacaagt accagatcaa atactgtccg ggcgtcaaga 2461 tcagcggcac ctggacggaa ctggaggact cctgcaatac cgtcgaggtg gtggagacca 2521 cctcctacga gatgacacag ctggtgggca acacctatta tcgcatcgaa ctgaaggcgc 2581 acaatgccat cggctattcg tcgccagctt ccatcattat gaagacgaca cgaggactcg 2641 acgttatcca ggtggctgac cgacaggtct tctcctcggc ggccatcgtg ggcatcgcac 2701 tcggcggcgt ccttctgctc ctcttcgtgg tggacttcct gtgctgcatc accgtccaca 2761 tgggcgtcat ggccaccatg tgccgcaagg ccaagcgatc gccctccgag atcgacgacg 2821 aggccaagct gggcagtggc cagctggtaa aggagccgcc accatcgccg ttgccactgc 2881 cgccgcccgt caaactgggc ggttcgccca tgacatcgcc attggacgaa aaggagccgc 2941 ttcgcacgcc caccggcagc attaaacaga actcaaccat cgagttcgac gggcgatttg 3001 tccactcacg cagtggcgag ataatcggca agaattcggc ggtgtaagga ggagcgtttc 3061 cagaactcaa ggacctccag gatccagaat ccagtatcca accgcaatgt gcacaaaaca 3121 tgaaggaggg aagatatata ctatacacat agatatatac ttgtatgatg atctagcgag 3181 aagaagccaa agccaaagct gggggaagaa aactggaata tcgatcgatt ggcacactaa 3241 gttggtttta atttactttc gtacacagcg taaatcttac taaatgtctt actataatac 3301 atacgatatc ttaaaagcat ctaaaacata gtacattaag ctcgaaagac cggaaagcaa 3361 acaagcaaaa aataagaata actccatgtc gcttcatttt actttatatt ttatatcgct 3421 gcatctgctt tgtttctcct tagtcagatt cataaaaatt acaaagaaat tacaaataac 3481 aaataacgat gaacaaaggt gggaagagta aataaaacaa gaggagatga tgagaaacgg 3541 acctagccta agttatatac atatatttaa atatatatgt atgcaagaaa gaaatcttaa 3601 attaatgcct tacaaacaaa aaattacatt tatttagcag ttaaagcgaa gagaagggat 3661 ttatgcatgt aagccgcaag gaatgagaac gatttcttta gtataactaa cttaaacatg 3721 ccataaataa gttttaacat taagtttgcc ccctgatcat catcccccac caattcgtag 3781 tacttaaaac gctgaacaaa agacttgcga gcatttcttt ccccacaacc atgacattaa 3841 atcggataga ttagaagaag aaaggacttg aatatttagt tgatatcgaa atccttggtt 3901 tcctatcgta attcgtatac ttaaccacca gaatgtgtaa tccgcggacg gcacccaatg 3961 aaaaatgctc aatgtacatt aatgttgacg aaattgaaat tgaaatggaa tatttgaaaa 4021 tgtttacaaa ctgcttagct tgactgcttg ctaagcggaa gacgtttccg gatccggttc 4081 atcccacaca agttcaaaca cgatgagaaa attacgaaaa tcgaaactaa ctcaagttaa 4141 ttgctaagtt gtagaaggaa aacggaaaac ggagaactac gagattgcca aacattaact 4201 attcatctta ctttcaaccc acttccatca gacaactgca aatcgctcag ttttgtgtta 4261 aaagtatttt cttatgtatg taaaaattaa acaaattgta gttaagagac ctaaaacgca 4321 ttaatctaac ggatatataa atctaaaata tatatatgta tgtacatgta tttaaattta 4381 ctcgtaagtt tttttttcta cacgaaacaa ataatacaaa ataaatgaaa aaaaaccaaa 4441 acaaaaagcg aactacaaat atgtaaccac gccgatctaa atgtatgtat gttatatcca 4501 tatccccatg gaatgcgcat ttttatttga cccccgcccc gcacaaatcc ccgatcccat 4561 ccgatccgat ccgatccttc gctgagatcc ccaatgagct attgtcgctt ctgttgccag 4621 ttaagtcaag cgccttgtca gagcttttta cctataacta tatatacaca cacgatacta 4681 tacaaagagc ctatcgaata acccacaaag cgaacccaaa tcgagattac aggaggctat 4741 atgaatttga atttgaattt ggatgcaatt gtttacggaa ctgccgacca tgcatatgaa 4801 atatgtttgc aaaaaccgaa cggatctagc cactcgatag ctctgttcgg cggcagagtg 4861 tagcttttta tatgaactaa acaaaattga tgaaaaatta tacactgaaa ctgaaacggg 4921 ggaaaataaa tcgtatttac tgtactataa ttccaaa