PREDICTED: Drosophila takahashii U2 small nuclear riboprotein

LOCUS       XM_017156256            1464 bp    mRNA    linear   INV 09-DEC-2024
            auxiliary factor 50 (U2af50), mRNA.
ACCESSION   XM_017156256
VERSION     XM_017156256.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017156256.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1464
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1464
                     /gene="U2af50"
                     /note="U2 small nuclear riboprotein auxiliary factor 50;
                     Derived by automated computational analysis using gene
                     prediction method: Gnomon. Supporting evidence includes
                     similarity to: 6 Proteins"
                     /db_xref="GeneID:108067292"
     CDS             147..1397
                     /gene="U2af50"
                     /codon_start=1
                     /product="splicing factor U2AF 50 kDa subunit"
                     /protein_id="XP_017011745.1"
                     /db_xref="GeneID:108067292"
                     /translation="MGYDDRERDRERRRHRSRSRDRHRDRSRDRRHHRNSRRKPSLYW
                     DVPPPGFEHITPMQYKAMQASGQIPASVVPDTPQTAVPVVGSTITRQARRLYVGNIPF
                     GVTEEEMMEFFNQQMHLVGLAQAAGSPVLACQINLDKNFAFLEFRSIDETTQAMAFDG
                     INLKGQSLKIRRPHDYQPMPGITDTPAIKPAVVSSGVISTVVPDSPHKIFIGGLPNYL
                     NDDQVKELLLSFGKLRAFNLVKDAATGLSKGYAFCEYVDLSITDQSIAGLNGMQLGDK
                     KLIVQRASVGAKNAQNAANTTQSVMLQVPGLSNVVTSGPPTEVLCLLNMVTPDELRDE
                     EEYEDILEDIKEECTKYGVVRSVEIPRPIEGVEVPGCGKVFVEFNSVLDCQKAQQALT
                     GRKFSDRVVVTSYFDPDKYHRREF"
     misc_feature    <261..1394
                     /gene="U2af50"
                     /note="U2 snRNP auxilliary factor, large subunit, splicing
                     factor; Region: U2AF_lg; TIGR01642"
                     /db_xref="CDD:273727"
     polyA_site      1464
                     /gene="U2af50"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 gttcttcgct tttcacgtgt tctgttttat atcgtttcac aaatttctgt attaatatac
       61 gcaatagggg atacactttt catcggcatt tatttagtaa aaattgtttt catttaaaga
      121 gtagatattt tgttttgagt acgacaatgg gatatgatga tcgtgaacgt gatcgcgaga
      181 gacgccgcca ccgatcccga tcccgtgacc gccatcgcga tcgctccagg gatcgccgcc
      241 atcaccgcaa ttcgcggcgc aagccgtcgc tctattggga tgtgcccccg ccgggctttg
      301 agcacatcac cccaatgcag tacaaagcca tgcaggcatc gggacaaatc ccagccagcg
      361 ttgtcccgga tacgccgcaa acggcggtgc ccgtggtcgg atcgacaatc acccggcagg
      421 cgcgtcgctt gtatgtcggc aacattccgt tcggcgtcac cgaggaggaa atgatggagt
      481 tcttcaacca acagatgcat ttagttggcc tcgcccaggc ggccggcagt cccgtcttgg
      541 cctgccaaat caatttggac aaaaactttg ctttcctcga attccggtca attgacgaaa
      601 ccacccaggc aatggcattc gatggcatca atttgaaggg gcagagctta aagattaggc
      661 gtccgcatga ttaccaaccg atgccgggca ttacagacac gccggccatt aagcccgccg
      721 ttgtttctag tggagttatt tcgacagtgg ttccggactc gcctcacaaa atctttattg
      781 gaggtctgcc aaactattta aatgacgatc aggttaagga actgcttttg tcgtttggca
      841 agcttcgagc gtttaacctt gttaaggacg ctgccactgg attgagcaag ggttatgcct
      901 tctgtgaata tgtggatcta agcatcaccg atcagtcaat tgctggcttg aatggaatgc
      961 agctgggtga caagaaacta attgtccaac gagccagtgt gggtgccaag aatgcccaga
     1021 acgctgccaa caccactcag tccgtaatgc tgcaagtgcc aggcctgtca aatgtggtga
     1081 cctccgggcc gcccaccgag gtgctctgct tgctcaacat ggtcacaccg gatgaacttc
     1141 gggacgagga ggagtatgag gatattttgg aggacatcaa ggaggagtgc acgaaatacg
     1201 gagtcgttcg aagcgtggaa attccccgtc ccatcgaggg cgtagaagtt ccgggatgcg
     1261 gcaaggtttt tgtcgaattt aactcggttc tcgactgtca gaaggcccag caggcgctta
     1321 ctggaagaaa attcagcgat cgcgttgtcg ttacatcata tttcgatcct gacaaatacc
     1381 atagacgcga attctaaata caagtaaatc atatttctca cattcaccga ttgtccaata
     1441 aatatcacac aataaaagta acaa