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LOCUS XM_017156152 3148 bp mRNA linear INV 09-DEC-2024 (LOC108067228), mRNA. ACCESSION XM_017156152 VERSION XM_017156152.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq; corrected model. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017156152.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## ##RefSeq-Attributes-START## frameshifts :: corrected 1 indel ##RefSeq-Attributes-END## PRIMARY REFSEQ_SPAN PRIMARY_IDENTIFIER PRIMARY_SPAN COMP 1-1854 JARPSC010000001.1 143363-145216 c 1855-2052 JARPSC010000001.1 143108-143305 c 2053-2466 JARPSC010000001.1 142627-143040 c 2467-3148 JARPSC010000001.1 141944-142625 c FEATURES Location/Qualifiers source 1..3148 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3148 /gene="LOC108067228" /note="ATP-dependent DNA helicase DDX11; The sequence of the model RefSeq transcript was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108067228" CDS 115..2688 /gene="LOC108067228" /note="The sequence of the model RefSeq protein was modified relative to its source genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon" /codon_start=1 /product="LOW QUALITY PROTEIN: ATP-dependent DNA helicase DDX11" /protein_id="XP_017011641.2" /db_xref="GeneID:108067228" /translation="MAQYTPHQPLATPTAQEFGFPYTPYGIQEQLMQEVFQVLENRKI GIFESPTGTGKSLTLTCGALTWLARHEDLVRSEMLARIRRVQLEVVKLEQDGKQARDW LESQGNCRLQEEELRKLQHLQGLLDQQEHQLAEIRKRAKIHKKQRREEHPPKPEDLDK DLESNSDSDSEHETADGPQGTSEDRYRPVQIFFCSRTHSQLTQIVAELRKTPHAQSVR CISLGSRQQLCGNPQVRSLRQVGLMNERCLEMASQKAQPNPSKKSRLTAGAGSRCPFK APSLVESLRDLALTEPMDIEELASEGVACGACSYYASRSALEQAQLILLPYQLLLQKS ARNQLGINLKGSIVIVDEAHNLLDTLAQLHGAEINRQQLERAKLEISGYKEHFQKRFS TKNLLKINQLIFIVRQLLKMLDRDEDRAQLHTSRMLRTYELTAEGDFFNIDLSELLDF CARTRFARKVQGHAVKMQREPRHSENQPPVSSARSQILQRLASEQKQKEQPKQPVKRK LEIFQEKVKEPTKIPVLEVIPSPVRPLLAFLGTLTSNAEDGRILLDSQEGTVKYILLD PAEQFADIVGEARAIVIAGGTMQPTQELKEQLFASCQDRLVERFYSHVVPDDAVLPFV VSNGPKGAPLCFKFAQRASIEMLQELSMILQNLCQVIPGGVVCFLPSYEYLDKVYKHL EQSSALERIARKKSVFREVSGSADQLLEKYAAAIKVSSGSGGALLLSVVGGKLSEGLN FADDLGRAVLVVGLPYPNRQSPELQQRMRHLDEKLGFGCGNEFYENLCLKAVNQCIGR AVRHINDYACVYLLDERFANPRIQRKLPEWISRHIVQASTGKGGFGAVQAQTARFFKS R" misc_feature 241..>327 /gene="LOC108067228" /note="N-terminal helicase domain of the DEAD-box helicase superfamily; Region: DEAD-like_helicase_N; cl28899" /db_xref="CDD:475120" misc_feature 265..285 /gene="LOC108067228" /note="putative ATP binding site [chemical binding]; other site" /db_xref="CDD:350670" misc_feature <355..567 /gene="LOC108067228" /note="Domain of unknown function (DUF4670); Region: DUF4670; pfam15709" /db_xref="CDD:464815" misc_feature 676..2628 /gene="LOC108067228" /note="DNA repair helicase (rad3); Region: rad3; TIGR00604" /db_xref="CDD:273169" polyA_site 3148 /gene="LOC108067228" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 aagcaacatt ttcatctggc aacactgtca cccgcgtcgt tttgtctttt ggacttctcc 61 atttagctcc ttttcctttt ggaaatgtaa aatcgattca aaagaagccg gaaaatggcc 121 caatacactc cccaccagcc actggccacg cccaccgccc aggagtttgg attcccctac 181 acaccatacg gaatccagga gcagctgatg caggaagtct tccaagtgct cgaaaacagg 241 aagattggca tatttgagag ccccacgggt acagggaaat ccctcacact cacttgtggc 301 gctctcacct ggctggcgag gcacgaggat ctggtgcgat cggaaatgct ggcgaggatt 361 cgccgggtgc aactagaggt ggtcaaactg gaacaggatg gtaagcaggc cagggattgg 421 ctagagagtc aggggaactg caggctacag gaggaggagc tccgcaagct gcagcacttg 481 caggggctgc tggaccaaca ggaacatcaa ctggcggaga tcaggaagcg ggcaaagatc 541 cataaaaagc aaaggcggga ggagcaccca cccaagccag aggaccttga taaggacctg 601 gaatctaact ccgactcgga ttcagagcac gaaactgcag atggacccca gggaaccagc 661 gaagatcgct atcggccagt gcagatcttt ttctgcagtc gcacccactc ccagttgact 721 caaatcgtgg cggaactgcg taagacaccg catgcccagt cggtgaggtg catttctctg 781 ggctcccggc agcaattgtg tgggaatccc caggtgcgca gcctccggca agtgggactc 841 atgaacgagc gttgccttga gatggctagc caaaaggcac agcccaatcc cagcaagaaa 901 agtagactga ctgcaggtgc gggcagtagg tgtccattta aagcgccttc tttggtggaa 961 tcccttcgag acttggctct cactgaaccg atggacattg aagagctggc cagcgaggga 1021 gtcgcctgcg gtgcctgctc gtactacgca tccagatccg ctttggagca ggctcaactg 1081 attctactgc catatcagct gctactccag aaatccgccc gcaaccagct gggcataaat 1141 ctcaaaggat ccatcgttat cgtcgatgag gcccataacc ttttagacac tttggcccag 1201 cttcatggcg ctgaaatcaa ccgtcagcaa ttggagcggg ccaaactgga gatctctggc 1261 tacaaagagc actttcagaa acgttttagc accaagaatc tcttgaaaat caaccaactt 1321 atcttcatag ttcgccagtt gcttaagatg ctcgaccggg atgaggatcg ggcccagctc 1381 cacacctcaa gaatgctgcg cacctatgaa ctaaccgccg aaggtgactt ttttaacatc 1441 gatctctctg agcttttgga tttttgcgca cgcactcgtt ttgcccgtaa ggtccaggga 1501 catgcggtta aaatgcaaag ggaaccgcgg cacagtgaga atcagccgcc cgtgtcatcg 1561 gcgaggagtc agattctcca gaggttggcc agcgagcaaa agcaaaaaga gcagcccaag 1621 cagccggtca agaggaaact agaaattttc caggaaaaag tgaaggagcc cacaaaaatc 1681 cctgtgctag aagtaattcc atcccccgta agaccattgc tcgcattttt gggaaccctc 1741 accagcaatg cagaggatgg ccggatttta ttagattctc aagagggaac tgtaaagtat 1801 atactgctcg atcctgccga gcaatttgct gatatcgttg gcgaagctag agcgattgtg 1861 attgctggcg gaaccatgca gcccactcag gagctgaagg agcagctgtt tgccagttgc 1921 caagatcgcc tggtcgagcg tttctacagt catgtggtgc ccgacgatgc ggtcttgccc 1981 tttgttgtgt ccaatggtcc aaagggtgct cctttgtgtt ttaaatttgc ccagagggca 2041 agtatagaaa tgctccagga gctgtcaatg atcctccaga atctctgcca agtgatacca 2101 ggcggtgtgg tttgcttttt gccatcctac gagtatttgg ataaggttta caaacattta 2161 gagcagtcca gtgcgcttga gaggattgcg cgcaagaaaa gcgttttcag ggaggtctcg 2221 ggctcagcgg accagctctt ggagaagtat gccgcagcta ttaaggtatc atctggctcc 2281 ggaggagccc tgctcttgag tgtcgtcgga ggaaagctct ccgagggcct aaactttgca 2341 gacgatcttg gccgggcagt cctggtagtg ggtctaccat atcccaatcg ccagtcgccg 2401 gaactgcagc agcgaatgcg acacctagat gaaaagcttg gttttggatg cggcaatgaa 2461 ttctacgaga atctttgctt gaaggctgtc aaccagtgca ttggacgagc agttcgtcac 2521 atcaatgact acgcttgtgt ttatctgcta gatgaacgct ttgcgaatcc aaggatacag 2581 agaaagctac cagaatggat ttcccgccac attgtgcagg cgagtactgg aaaaggaggc 2641 tttggagctg ttcaagcgca aactgcaaga ttttttaaga gcagataagt caaatccaaa 2701 ccaatcatag atcgaaattt aatcattttt tacatttagt ttttaaatat tcaaagtatt 2761 gtaattatta ctttggtagg aaatccacct agtgataaat tgcaccggga gaacaccatt 2821 gcaatcggac aatttttaga agttataata tttttaagat ttttgggtaa ttttctaatt 2881 tagtgtgtat ggtttgtccg gtctatttaa tctttttatg acctggtttt tttgttaaca 2941 aaacgtttga aacagccgct agtcaaattt aaaataattt ttcgtcacac atactgatat 3001 tacatatttt aatgttgaaa ttatggaatt tattgaatta ttttttttat acaaaaatac 3061 ttttagttac ttgcaaaaat attttaagga atttaatgca aaacagtatg taccacgtta 3121 tcagtataaa aaacaaaaac ttaagaaa