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LOCUS XM_017155749 3455 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017155749 VERSION XM_017155749.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017155749.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3455 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3455 /gene="HP5" /note="Heterochromatin protein 5; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108066944" CDS 284..2761 /gene="HP5" /codon_start=1 /product="neurofilament heavy polypeptide isoform X1" /protein_id="XP_017011238.2" /db_xref="GeneID:108066944" /translation="MDIFDMVKAAPPPQTIAPVDRKISTPSPIAPDSPYNSDLLESGN LSNDEDLDKQATPDDSSFHLPSNQSSKTEESPFKMPKKVKKKEELGSIDLKSSSDEEQ DEPTFKKPRKSEEYHKSPAKPHKKRAAETLEDSKDSSEEEQKNPGPTKTKAQQKMFND PEIRECRVRVRRLTQLEIDAAFESLAKSPFADSSPRKMGRGRPRKTNPSPPQKKQNKI HIKVPLQNGAKKRAMHHQLARGHTPPPSLSRRGNKSPEKPKQKLKAKQKKPLRGRNAS QALIQRFGARFFDCVVRIKRTPWPNPLGKKGRSRKSNLSVSFSEAVEILGSAEGHSRR ATFGSISAKSSPKPTRLQRVDATGNVLEDIALTSTPLTPLAQSAGPSTSSGGSREKGK RRSCNGSPMGGRLKRPHQRLPLSSLASLRLDDGPNSGEDEEYIVPNELPGIKRPATPP LKKKKISFTTTISDDEDEKPPLPKKPKDGPKKQPKVLKESVIKKAEKSHKEKERKQEK SNEIVKEKLPLPEIKAADKVEVKPPENEANEVERDGEAQKKSETEAAEEKRDESEEEK PEEEEKLEDKTKENPQEAQEEEAPKEETSEAVEENAEETSENLNESLQNPTEEEKPGE EEEKEELRQLASPKSQLPLLVPSATEDNEEDILEIQTSLDDVRQLHTPSSRLSTPKPR SRLDSGESDCSFKSASDHDKQAAVMEATEEQEEREAEEEQQQAEETLEDQLTAAAITD DELELPANELPAELMTPPSAPRTTNGGDPTSGSSASAPYYSPIESIPTLDDEVLGQLV EPDFQLNSSRHAISRGTLDDIMTALES" polyA_site 3455 /gene="HP5" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgcaatttcg cgggtatttt cccaggcgac ggtcacaccg cgtgatggcg tctttaaaag 61 tctaaaaatt atcagcgttt tagctgaatg aaaacgcgat tttcgaggcg catgcggtaa 121 ttgggtgggc gaaataaact aaaatcgcgc gccaggaatt gtaggcggtt aaaggagccc 181 ccttaagcgg gcgaacgagc agctaattgg gcaaataaaa cgagtgttcc gcagcgcttt 241 tcattttttg tgggaaaatc gcaacgggcg gcattctgcg ataatggaca tttttgatat 301 ggtaaaagcg gcgccgccgc cgcaaacgat agctccggtg gaccgaaaga tctccacgcc 361 gtcgccaata gcgccagatt ctccctataa ctcggacctt ctggagagtg gaaatctatc 421 gaacgacgag gatttggata agcaggctac tcccgacgat tccagctttc atttaccttc 481 caaccagagc tcaaaaacag aggaatcgcc ttttaagatg ccgaaaaaag taaagaaaaa 541 ggaggaactc ggttccatag atctaaagag ctcctccgat gaggagcagg atgaaccgac 601 gttcaagaag ccgcgcaaga gcgaggaata ccacaagtcc ccagcgaaac cgcacaagaa 661 gagggcagcg gagacgctgg aggactccaa ggactcctcc gaggaggagc agaagaatcc 721 cggacccacc aaaaccaagg cccagcagaa gatgttcaat gatcccgaga ttagggagtg 781 ccgggtgcgg gtgcgtcgcc tcacccaact agaaatagat gccgccttcg aatcgctggc 841 caagtcaccc tttgccgact cctcgcctcg caaaatgggg cgtggcaggc ccaggaaaac 901 caacccatcg ccgccccaga aaaagcagaa caaaatccac atcaaagttc ctctgcagaa 961 tggcgccaaa aagcgggcga tgcatcatca gttggcccgt ggacacacgc cgccgcccag 1021 tttgtcgcgt cgtgggaata aatccccaga gaaaccgaaa cagaagctta aggccaagca 1081 aaagaaaccc ttgaggggcc gcaatgccag ccaggcgttg atccagcgct ttggcgcccg 1141 tttctttgac tgcgtggtga ggatcaagcg aacgccttgg ccaaatccgc tgggcaagaa 1201 gggccgctcg aggaaatcca atctatcggt gtccttcagc gaggccgtcg aaattctggg 1261 cagcgccgag ggacattcgc gtcgggcgac cttcggttcg atatcagcca agtcgtcgcc 1321 gaagcccaca cgtttgcagc gcgtcgatgc cacgggaaat gtgctcgagg acatagcatt 1381 gacctccacg ccgctcacgc cgctggccca aagcgcggga ccttcaacct ccagtggcgg 1441 atcgcgcgag aagggcaaac ggcggtcgtg caacggctca ccgatgggcg ggcggctcaa 1501 gcggccgcac cagcgactgc cgctctccag tttggccagc ctgcgcctgg acgatgggcc 1561 caattccggc gaggacgagg agtacatagt acccaacgaa ctgccgggca tcaagcgacc 1621 tgccactccg ccgctcaaga aaaagaagat atccttcacc acgaccatca gcgacgacga 1681 ggacgagaag ccgccgctgc caaagaagcc gaaggatggc ccaaaaaagc agccaaaggt 1741 cctcaaagag agcgtcatca agaaggctga gaaatcgcac aaggagaagg agagaaaaca 1801 ggaaaagtcc aatgagattg ttaaggaaaa gctgcccttg cccgaaatta aagccgccga 1861 taaagtggag gttaaaccgc cagaaaatga agcaaatgaa gtagaaagag acggagaagc 1921 gcagaagaaa tcagaaacag aggcagctga ggaaaagcga gatgaaagtg aggaggaaaa 1981 gccagaggaa gaggaaaaac tagaagacaa aacaaaggaa aatccacaag aagcacaaga 2041 agaggaggct ccaaaggagg aaacatcaga agcagttgaa gaaaatgcgg aggaaacctc 2101 ggaaaacctc aatgaatccc tgcaaaatcc cacagaagag gaaaagcccg gggaagaaga 2161 ggaaaaggag gagcttaggc agttggccag ccccaaaagc caactaccac tcctcgtccc 2221 gtccgccacc gaagataatg aggaagatat cctcgagata cagacgtccc tggacgatgt 2281 ccgccagctg cacacgccct catcccgcct cagtacgccc aagccgcgca gtcgcttgga 2341 ttctggtgaa tccgattgca gcttcaagtc cgccagcgat cacgacaagc aggcggcagt 2401 aatggaggct accgaggagc aggaggagcg ggaggcggag gaggagcaac agcaagcgga 2461 ggaaaccctc gaggatcaac tgacagcggc tgccattacc gacgacgaac tcgagctgcc 2521 cgccaacgaa ctgcccgccg agctaatgac cccgccctcg gcgcccagga caacgaatgg 2581 cggcgatcca accagcggat ccagtgcctc ggcgccctac tactcgccca tcgagtccat 2641 acccacgctg gacgacgagg tccttggcca gctagtcgag cccgactttc aattgaactc 2701 cagccgccat gctatttccc ggggcactct ggacgacata atgactgcgt tagaatccta 2761 ggaagctggc taatttcgca tccacaacta acagatacac gagaagcatt cacagacata 2821 gatacacact cacatccaca aacagaagcg attagaaggt gaattaagga gcgattaggt 2881 ttgaacttag tctggctttt aaatatgttc cccgcgaatg atcaagaaat agtcgtacgt 2941 ttacttttaa agacaccttc attttccaca cggtactcaa attaaaaata ctaaagtatt 3001 ttttttaaga gaaagcttga aagctggcaa acttgaataa tttgcactca aataggttgc 3061 tgatctagtc agctaaactg gacttaaacc ttaaacacaa ctcaattact catatttctg 3121 tgtgaacaag aaacaattgt ggaaataaat taattagtca ggaaaattaa agaagtttta 3181 gatgaagaaa aaacatataa ttaatttgta atgtttaagt tgcttaaaca gatcgttatg 3241 ttagttatac gcgctaaagg aatacgtatt gttcatttcc cccctttttt ttgacaacct 3301 agatttccta agtataaaat tgcattctac tgcacatata ttatataaat atatttaagt 3361 aaaaatcatc ttaaaatagt tgtaaattca atgtattaat gagcaaaata atatgtatgt 3421 attgtaaaaa gaaaaaaaaa acagagtata aaata