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LOCUS XM_017155727 3398 bp mRNA linear INV 09-DEC-2024 ACCESSION XM_017155727 VERSION XM_017155727.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017155727.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3398 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3398 /gene="Lim1" /note="LIM homeobox 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108066932" CDS 774..2276 /gene="Lim1" /codon_start=1 /product="LIM/homeobox protein Lhx1" /protein_id="XP_017011216.1" /db_xref="GeneID:108066932" /translation="MAFGAVLHTSQHNIGRSEPPVGVGDPCAGCNKPILDKFLLNVLE RAWHASCVRCCECLQPLTDKCFSRESKLYCRNDFFRRYGTKCSGCGQGIAPSDLVRKP RDKVFHLNCFTCCICRKQLSTGEQLYVLDDNKFICKDDYLLGKAPSCGHNSLSDSLMG SASEDDDDDDPPHLRATALGLGVLGPNGPDSAGGPLGTSDISVQSMSTDSKNTHDDSD QGSLDGDPDGRGDSQAENKSPDDANGSKRRGPRTTIKAKQLEVLKTAFNQTPKPTRHI REQLAKETGLPMRVIQVWFQNKRSKERRMKQITSMGRPPFFGGARKMRGFPMNLSPGG LDDGPGFPYFAADAKFEFGYGGPFHPHDGPYFPGHPGGPMPFNAPGGPMDHSGPIPMV NEFGLTPEATFLGQAGGPPMQLQSAVGPPPPPPPPSAEHLMAAAAAAAQQQAAQQQQQ QQQQQQNAQQAANQTQQQQQQNGPRTNSPEFMSSANFSEPQNMQNEGLVW" misc_feature 852..1007 /gene="Lim1" /note="The first LIM domain of Lhx1 (also known as Lim1) and Lhx5; Region: LIM1_Lhx1_Lhx5; cd09367" /db_xref="CDD:188753" misc_feature order(852..854,861..863,915..917,924..926,933..935, 942..944,993..995,1002..1004) /gene="Lim1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188753" misc_feature 1029..1196 /gene="Lim1" /note="The second LIM domain of Lhx1 (also known as Lim1) and Lhx5; Region: LIM2_Lhx1_Lhx5; cd09375" /db_xref="CDD:188761" misc_feature order(1029..1031,1038..1040,1095..1097,1104..1106, 1113..1115,1122..1124,1182..1184,1191..1193) /gene="Lim1" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:188761" misc_feature 1326..1745 /gene="Lim1" /note="Homeodomain-containing transcription factor [Transcription]; Region: COG5576" /db_xref="CDD:227863" misc_feature 1515..1685 /gene="Lim1" /note="Region: Homeodomain; pfam00046" /db_xref="CDD:459649" polyA_site 3398 /gene="Lim1" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcagtttttg tttgacgttc gcgtgaagcg cccgcaaaac gcaaaacgca cgaggaaacc 61 gctcgacagg gaggcaacgc agtcgattta ccgtttaccg tttaccgtta gtcagctgtt 121 tccgctccgc cgcgaaatcg aatcgaatcg agaatttttg cgttgttcaa atttttttgc 181 aagtgagagt cttgaacaac aagaagaagc atataaatat atatacgaaa accaagaaat 241 cgcagaaaag ctaaaagtgc aaagtgctaa aaaatagaaa ttaagaaata tatacaacta 301 aatactggaa tacaaggaag cgcaaagaga attactcaaa gaggagcgga atttcgcgct 361 ttgtttttgt tttgccaaat ttgccgccgg cacacacgtg ctattcccct ctcgctcgca 421 cctgccccca cggtctctat gtgcgttaac cgttaagtgt gtaggtgggg tttaacccgc 481 tcctctatct ctctccccct ctctccgtct cgctttcacc cctacgcaca cgcacacaca 541 cacacgcaca ctcgcacgcg ggacttaacc cactgaggcc cccccgaaaa aaggcaacca 601 ccccccccaa aaaaaaaaca acaaaaactc catcccccgg catcaagata ttcgacaaca 661 aaattctcac cgaggcctca aaagcgcccc tgagggccgt cgcactggcg tcatttctgg 721 gcgacgggtt cgccgccctc ggtagccgcg cccccccgcc caaggaccat ctgatggcgt 781 tcggggcggt cctacacacc agccagcaca acatcggtcg cagcgaaccg cccgtgggcg 841 ttggcgatcc ctgcgccgga tgcaacaagc ccatcctgga caagttcctg ctgaatgtcc 901 tggaacgcgc ctggcacgcc tcctgcgtcc gctgctgtga atgcctccaa ccgctcaccg 961 acaaatgctt cagccgcgaa tcgaagctct actgtcgcaa cgatttcttc agacgttacg 1021 gcaccaagtg cagtggctgt ggccagggta tcgcgccgtc ggatctggtg cgaaagccca 1081 gggacaaggt cttccacctg aactgcttca cctgctgcat ctgccgcaag caactgagca 1141 caggtgagca gctctacgtg ctggacgaca ataagttcat ctgcaaggac gactatctgc 1201 tgggcaaggc gccatcctgc ggccacaatt cgctgagcga ttcattaatg ggctcggcga 1261 gcgaagacga cgacgacgat gatcccccgc atttgcgggc cacggcactc ggattgggcg 1321 tactggggcc caacggaccc gactcagcgg gcggacctct gggcacatcg gatatatcag 1381 tacaaagcat gagcaccgat agcaaaaata cccatgacga ttccgatcag ggctccttgg 1441 acggcgatcc ggatggacgc ggcgattccc aggcggagaa caaaagtccc gacgatgcca 1501 acggatcgaa gcgacgcggt ccgcgcacca ccatcaaggc caaacagctg gaggtgctga 1561 agacggcctt caatcagacg ccgaagccga cacgccacat cagggagcaa ctggccaagg 1621 agaccgggct gcccatgcgc gtcatacagg tgtggttcca aaacaagcgg tcgaaggagc 1681 gacgcatgaa gcaaatcacc agcatgggcc gtccgccttt cttcggaggc gcccgcaaaa 1741 tgaggggctt cccgatgaac ctctcgcccg gcggactgga cgacggaccc ggcttcccct 1801 actttgcggc ggacgccaag ttcgagttcg gctacggcgg acccttccac ccgcacgacg 1861 gaccctactt tcccggccac cccggcggcc cgatgccgtt caatgcgcca ggcggcccca 1921 tggaccacag cggccccatt ccgatggtga acgagttcgg actgacgccg gaggcgacgt 1981 tcctcgggca ggcgggcggt ccgccgatgc agctgcagtc ggccgttggg ccgccgccac 2041 cgccgccgcc accgagcgcc gagcacttga tggccgccgc agcggcagcg gcgcagcaac 2101 aggcggcgca acagcagcag cagcaacagc agcaacagca gaatgcgcaa caagcggcga 2161 atcagacgca gcagcagcag caacaaaatg gcccccgcac caattcgccg gaattcatga 2221 gctcggcgaa tttcagcgaa ccgcagaata tgcaaaatga agggctcgtt tggtaatata 2281 cgaaacagtt ggcaacgcgg ctgctgctct tcggcagaga gcgagtgcga gagcgggaga 2341 gggagagagc ggcgcagagc gagtgcgagt gagggagata gcaatggctc tcgctgtagt 2401 gccgtctcgc tctcgcccga aggctaagcc ccaccccctc tgctacgttt tgtttttgtt 2461 ataactttat tattattatt attattactg tgctattttt tttgtatttc aattcggcgc 2521 caaaatattt gtaaattata aaaaactaaa caaaacaaaa aaaaaaacaa aatagacaaa 2581 gaaaatctct cttaaatgta taaaaaaaac aaaaacaaat aatgggcgct gcacatagta 2641 aacaattttt tttaacaata aaaaacataa aacaagaaga aaaactctaa aaaaattaaa 2701 ttaaaagcaa acactaaacg tcttgtctgt aattaaaaca aaaatactat ttatgtgtat 2761 cagtgtataa aaaaaaatgc aaaaatctgt agtctaaaaa aagaatgatc ggcataaaga 2821 gatttttttt gtaaattagc acattttatt cgtaactcta aaaattgttt attttctgcc 2881 tgcatttttt gacgaaaaac ttttttttta tattattaca cgtaacatat ggatatatat 2941 tataatcgtt gtctaacaac ataaacgtaa ctaggcatgt actaggtcct aagtctacat 3001 aaaccagata ttatatatac aagagctata tacggcagca cacacgtaca cggcaaaaaa 3061 aacgacaaaa aacaaacaac acatagcaaa ctaaactaaa ctattttttt ttttttgtgg 3121 tcctagaacg taagcgaacg taatttatta taaacaaatc gataaaaaaa agatgagaga 3181 gaagggagag aaagaaggat gatgaggcag tggaaatgct aaaactaaat gtaaacctag 3241 aaaaggatga cacctaaaca aaattacaca tatatataaa aagtatatga gcataaatat 3301 atgaatttcc aattataatg atatagcagc gaaaaaaaac gagaaaaaga gaaaatccca 3361 aatcccccag ctaacaattt tgattattat tatgacga