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LOCUS XM_017155720 4542 bp mRNA linear INV 09-DEC-2024 (hop), mRNA. ACCESSION XM_017155720 VERSION XM_017155720.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017155720.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4542 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4542 /gene="hop" /note="tyrosine-protein kinase hopscotch; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108066927" CDS 403..3936 /gene="hop" /codon_start=1 /product="tyrosine-protein kinase hopscotch" /protein_id="XP_017011209.2" /db_xref="GeneID:108066927" /translation="MALEPPGASAAAAAMDDSSSGRTSLADSASLTNSSLRSGCSSQS ISAYDGTIRIFNLATKGYERFPPHMNCEQICNEMCKLLCIAPTAQLLYGIREHSTSRR PTPLIRLELTWSLPGERLNCQLIYCFRMRFRVPELDNQLESIDGRSHKFLYFQMRHDW LTEQIPEIRYPEHKDKSTGLAVMDMMIDAQEQTEQDQALRDIEKSYKTYLPPSLWRAH SFFVGSKIREVFRNLKANAPSVERLKWHYVHQISHLAPSYLTEQFTCTVQYLPNEEVT RGGSSGIVGSLTQAVSKSTSTLVSSGSTNTLSTLTTSAPQVGKKGKRRSASAGIDVYV RVFPHDSLEPGLKVARVTSEATLKWNLVGAVEGIFMISKINETSVRLEIVGLPKGYEM QFQTDKEMKSFISYLGIYIRLSSKWMQDLCHSYRTPSLEELGALYCHGPIGGAYSLMK LHENGDKCGSYIVRECDREYSIYYIDINTKIMAKNTDQERCKTETFRIVRKDSQWMLN YNNAVHTLNSLHEVAHFIQADSPDRYRIPASKYDKPPLLLLLLPKNLKAKKTDLQLSE AELQRRNPQIFNPKTDLQWYPDSISLSDDGMMFTMRGDWLQQSPVKDVSVTMKMLKSD GNFMEFFRLAQTWSLIQSPQFLKLYGLTLADPYTMVMEYSKYGPLNKFLHTVPNVTLH CLLDLMHGLVRGMHYLEDNKIIHNYIRCSNLYVTKYDPNSYVLDVKISDPGYPRPYRE SDSPWVPTKYYRNLQAAKLDQYTQLWAFATTIYEIFSRCKEDLRNLKQEQLLRQRNTD GNILKMLDPDLCPTLMFETIMDGWSDDEEKRFSHHDIFSRLNTMKAEILPNYQPPPVA TNGAGEEEEVVERSDMPRNYPFPRSNMLMAITLTSECRVIYNMENMIGQGHYGTVFKG HLEFNDKDQPREQVAIKMLNTMQVSTDFHREIGIMRSLVHPNIVKFRYWAEKSHCIIM EYLSGSFDTYLRFEAPNLKDARLVAFALDIAQGMKYLSGMGLIHRDLAARNILVDHNG DGDCVKISDFGLAQFVNSDGYYYVKSKRDIPIKWYSPEAISTSRFSSYSDVWSYGVTL FEMFTRGEVPNLVPMQTSQEDFLNRLMNGERLNRPASCPDFMYELMQLCWHATPRSRP SFADIVEMITNEVATKISHPSDGHQPPPEAE" misc_feature 544..1191 /gene="hop" /note="Band 4.1 homologues; Region: B41; smart00295" /db_xref="CDD:214604" misc_feature 1672..1962 /gene="hop" /note="Src homology 2 (SH2) domain in the Janus kinase (Jak) family; Region: SH2_Jak_family; cd09921" /db_xref="CDD:198177" misc_feature order(1732..1734,1792..1794,1870..1872,1876..1878) /gene="hop" /note="phosphotyrosine binding pocket [polypeptide binding]; other site" /db_xref="CDD:198177" misc_feature order(1873..1875,1957..1959) /gene="hop" /note="hydrophobic binding pocket [polypeptide binding]; other site" /db_xref="CDD:198177" misc_feature 2164..2922 /gene="hop" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature order(2182..2193,2200..2202,2206..2208,2251..2253, 2257..2259,2338..2340,2383..2394,2521..2523,2533..2538, 2542..2544,2590..2595) /gene="hop" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" misc_feature 3073..3879 /gene="hop" /note="The protein kinase superfamily is mainly composed of the catalytic domains of serine/threonine-specific and tyrosine-specific protein kinases. It also includes RIO kinases, which are atypical serine protein kinases, aminoglycoside phosphotransferases; Region: Protein Kinases, catalytic domain; cl21453" /db_xref="CDD:473864" misc_feature order(3109..3120,3127..3129,3133..3135,3187..3189, 3193..3195,3274..3276,3316..3327,3454..3456,3466..3471, 3475..3477,3514..3519) /gene="hop" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:270870" polyA_site 4542 /gene="hop" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tgccccctgc atttctccga cggaatccga gtcgcagcta ttcgtggctt ttttttattt 61 ttcgcaattg caattgcctc ggcggttcac tcgcccactc caggccactc gagatctcgg 121 aggcgacact cagccaggtg cacatcctcg gaggagccat ccccgaaacc ccgaaagtgt 181 ttgcaactct ctcgctgttg cttttttggg tgtcttattt cgggggaaag ggaaaagcga 241 gaaaagcgag tgaatttctc gcgaggattg gaggaggagc aggtggattc catgcctgca 301 agaggcacgg gtaagagaac caccaacggc tgaaaactgg gactccagga ggcggcggac 361 gaggagcacc agctgcaccg ccgaccagga ggagcacttc tgatggccct ggagccacca 421 ggcgcctccg ccgccgccgc cgccatggac gacagcagca gcggacgcac ctcgctggcg 481 gacagcgcca gcctgaccaa ctcctcgctg cgcagcggct gctcctcgca gagcatcagc 541 gcctacgacg gcaccattag gatcttcaat ctggccacca agggctacga acgctttccg 601 ccgcacatga actgcgaaca gatctgcaac gagatgtgca agctcctctg cattgcgccc 661 accgcccagc tgctctacgg catccgggag cactcgacat cgcgtcgtcc cacgccgctg 721 attcgtctgg agctcacctg gtcgctccca ggcgagcgac tcaactgcca gctgatctac 781 tgctttcgca tgcgtttccg tgtccccgaa ttggacaacc aattggagtc catcgacggg 841 aggagccaca agttcctcta ctttcaaatg cgacacgatt ggctaaccga acagatacca 901 gagattcgct atccggagca caaggacaag tccacgggac tggccgtgat ggacatgatg 961 atcgatgccc aggagcagac cgaacaggat caggctttgc gggacattga gaagtcgtac 1021 aagacctatt tgccgcccag tttgtggcgg gcgcacagct ttttcgtggg ctccaagata 1081 cgcgaggtgt tcaggaatct aaaggccaac gccccgagtg ttgagcgttt gaagtggcac 1141 tatgtccatc agatctcgca tttggcgccc tcgtacctca ccgaacagtt cacctgcacc 1201 gtgcagtatc tgcccaatga ggaggtgacc cgcggcggaa gctccggcat cgtgggaagc 1261 ctcacgcagg cggttagcaa gtccacctcc acgctggtca gctcgggatc caccaacacg 1321 ctgtccactt tgaccacgag tgctccgcaa gtcggcaaga agggcaaacg acgatccgcg 1381 agcgccggaa tcgatgtcta tgtgcgggtc tttccgcacg actcactgga gccgggactc 1441 aaggtggcca gggtcacatc ggaggccaca ctcaagtgga atctggtggg cgccgtggag 1501 ggaattttca tgatctccaa aatcaacgag acctcagtga ggctcgaaat cgttgggttg 1561 cccaagggct acgagatgca gttccagacg gacaaggaga tgaagtcctt catctcctac 1621 ctgggcatct atatcagatt gtccagcaaa tggatgcagg acctgtgcca ctcctaccgc 1681 acgccctccc tcgaggagct gggcgccctc tactgccacg gacccatcgg cggcgcctat 1741 tcgctgatga agctgcacga gaacggcgac aagtgcggca gctacattgt gcgcgagtgc 1801 gaccgagagt acagcatata ctacatcgat atcaacacca aaatcatggc caaaaacacc 1861 gaccaggagc gctgcaagac ggagacgttc aggatcgtgc gcaaggactc gcagtggatg 1921 ctaaactaca acaatgcggt gcatacgctc aactcgctgc acgaggtggc gcacttcatt 1981 caggccgaca gccccgatcg ctaccgcata cccgcctcca agtacgacaa gccgccgctg 2041 ctgctgctgc tgctgccgaa gaacctcaag gccaaaaaga ctgacctgca gctgagcgag 2101 gcggagctgc agcggcgcaa tccgcagatc ttcaatccga aaacggatct gcaatggtat 2161 ccggattcga tatctctgag cgacgacggc atgatgttca ccatgcgtgg cgattggctg 2221 caacagagtc ctgtgaagga tgtttcggtc acaatgaaaa tgctaaaaag cgacggcaat 2281 ttcatggagt tctttcgact ggcgcaaacc tggagtctca tccaatcgcc gcagttcctc 2341 aagctgtacg gcctcacgct cgccgatccc tacaccatgg tcatggagta ctccaagtac 2401 gggccactga ataagttcct gcacacggtg cccaatgtca cgctgcactg cctcctcgat 2461 ctgatgcacg gactggtgcg cggcatgcac tatctggagg acaacaagat catacacaac 2521 tacatcaggt gcagcaatct gtacgtgacc aaatacgatc ccaattcgta cgtgctcgat 2581 gtgaaaatca gcgatcccgg ctatccgcgt ccctaccgag aatccgactc accgtgggtg 2641 cccaccaagt actaccgcaa tctgcaggcg gccaagctgg atcagtacac ccagctgtgg 2701 gccttcgcca ccaccatata cgagatattc tcgcgctgca aggaggatct gcgcaatttg 2761 aagcaggagc aactgctgcg gcagcggaac accgatggca acatactcaa gatgctcgat 2821 ccggacttgt gtcccacgct aatgttcgag acgatcatgg acggttggtc cgatgacgag 2881 gagaagcgct tcagccacca cgacatcttc tcgcgcctca acacgatgaa ggcggagata 2941 ctgcccaact atcagccgcc accggtcgca acgaatggcg ctggcgagga agaggaggtg 3001 gtggagagga gcgacatgcc ccgcaactat cccttccctc gttcgaatat gctgatggcg 3061 ataacgctga ccagcgaatg ccgcgtcatc tacaacatgg agaacatgat cggccagggt 3121 cactatggca ccgtcttcaa gggccacctg gagttcaacg acaaggacca gccgcgcgag 3181 caggtggcca tcaagatgct gaacaccatg caggtgtcga ccgacttcca tcgcgagatc 3241 ggcatcatgc gctcgctcgt tcatccgaat atcgtcaagt tccgctactg ggcggagaag 3301 tcgcactgca tcatcatgga gtacctgtcc ggctccttcg atacctacct gcgcttcgag 3361 gcgcccaatc tcaaggatgc acgactggtg gccttcgctt tggacattgc acaaggcatg 3421 aaatacttgt ccggcatggg actgatccac agggacttgg ccgcccgcaa cattctggtg 3481 gatcacaacg gcgatggtga ttgcgtcaaa atctcagact ttggcctggc gcaattcgtc 3541 aattcagatg gatattacta cgtgaagagc aagcgagata ttcccattaa atggtactcc 3601 ccggaggcca tctccaccag cagattctca tcctactcgg acgtttggag ctacggcgtc 3661 acgctcttcg agatgttcac ccgcggcgaa gtgcccaatt tggtgccgat gcagacctcg 3721 caggaggact tcctgaatcg cctcatgaac ggtgaacgat taaatcggcc ggccagttgt 3781 ccggacttca tgtacgagtt gatgcagctg tgctggcacg ccacgccccg ttcgcggccc 3841 agtttcgccg acatcgtgga gatgatcacc aacgaggtgg ccaccaagat ttcgcatccg 3901 tcggatggcc accagccgcc gccggaggcc gagtgacagg aggcgcgagt tgcgaatccg 3961 agttcgcaat caacagaatg atatacacat atttaggcat aagttcgttc ttttaagctg 4021 ttagcattta acctgtacgt ttttaaaaca acacaagcga accccaaaac cacttgacgt 4081 caccccccaa aaacccttaa agcttaaagc gctttcggaa gaatcacaaa acacttaaaa 4141 cgaaaaaaaa tcaaaaaaaa aaacacccat ctgtaatctg taatatgtaa aatgtaatat 4201 gtaatctgta atcggtaaca agcccaaaac acacacacaa aacacaaaca ctcacgcctt 4261 cgcaagcctt tttggattct cgccagacct tagttttatt cttgtgctca ccactggccc 4321 cctaaaactc gtctctagcc ccctattaac ccccctctct tgactaagcg gaagacccga 4381 ctttacatat atacgcatat atatttaaac aaattctcaa cctactttgt gttatacatt 4441 ttagcccact ttgttaaata ttgttaagct tgagcttcaa ccttttgtaa tgcccacgca 4501 taaacactaa actaaatact aaatataaag tgtaaataat aa