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LOCUS XM_017155311 3363 bp mRNA linear INV 09-DEC-2024 (Neto), transcript variant X1, mRNA. ACCESSION XM_017155311 VERSION XM_017155311.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017155311.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3363 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3363 /gene="Neto" /note="Neuropilin and tolloid-like; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108066694" CDS 285..2792 /gene="Neto" /codon_start=1 /product="uncharacterized protein Neto isoform X1" /protein_id="XP_017010800.2" /db_xref="GeneID:108066694" /translation="MRGRRSTGGVQQPQQRPHEQQQQPNQRLIHGPRCSLLMLLIVGH AVYASAGSEVITNRSTPTDESLTLPLTLPLTLPLTGDRPPNVTLSRLFSRPFREPDVA EGEGEGGDWGEAQLPQTISRPPRAGRSARQAEEDQVDRCRLFVEGDPTKNELYSPEYP NLYPKNINCTRVITAPKGQIIRLDFRNSFNIEDKEECKFDFLEIRDGQYGFSQLLGKF CGTNFPPELTSKERYLWLHFHSDETIEYTGFSAVYEYLDRNREAASTDLNCTIEKGGF EGFINSTDVPAEIREQVIHSKIALDCIWRIQVKENWKIYLKFLDFKLSKPNDCDTNFL DIFPEQTVMPRRVKNFCGSAGESITAESNILHLRFYADQIAINSTFGILFTAFRDKGP AGACAEDEYDCEDATCISKDLKCNNLDNCKFRWDEEDCKGDANGQSEHVVIIVTVFGL ILGGMVLTFIVNCTRKIIRDQKIIREHIRESKESKLDEMGRNSKGRSRENISRQKHSQ TSLQILDDVSNRYYREAVPLSTQSSKADFKEKEHSILRRHADMTQTSLCEDDGESSST TTATHELMTKAAMSAVPSNACDMGCQTRESLFVNSPGIGPSAGVGVAVGIGIAVAPGG GVATLMRQKSSSSSLGGHSGSGGGAMMMPPPPQRFFSTFGYEPSGSPAVATLTRRSMH QQHPQQQQQQQHHQLPRQESMEMEERHSGRSHYGGLLVASTVKQPQEICHHHHQHQQQ HQQQQQQQQHIQQQQQQQRMHHAHPHPPSIAARLPTMKGHGAMGQTTILPGGNKQQHH QQQQQQQQQQHQQKNEESKVFIDIRNSAPDVIIMTSH" misc_feature 741..1046 /gene="Neto" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; Region: CUB; cd00041" /db_xref="CDD:238001" misc_feature order(741..743,747..749,828..830,846..848,960..962, 1032..1034,1038..1040,1044..1046) /gene="Neto" /note="heterodimerization interface [polypeptide binding]; other site" /db_xref="CDD:238001" misc_feature <1182..1442 /gene="Neto" /note="CUB domain; extracellular domain; present in proteins mostly known to be involved in development; not found in prokaryotes, plants and yeast; Region: CUB; cd00041" /db_xref="CDD:238001" misc_feature 1470..1574 /gene="Neto" /note="Low Density Lipoprotein Receptor Class A domain, a cysteine-rich repeat that plays a central role in mammalian cholesterol metabolism; the receptor protein binds LDL and transports it into cells by endocytosis; 7 successive cysteine-rich repeats of about...; Region: LDLa; cd00112" /db_xref="CDD:238060" misc_feature order(1485..1487,1509..1511,1542..1547) /gene="Neto" /note="putative binding surface [active]" /db_xref="CDD:238060" misc_feature order(1521..1523,1530..1532,1542..1544,1560..1565) /gene="Neto" /note="calcium-binding site [ion binding]; other site" /db_xref="CDD:238060" misc_feature 1551..1565 /gene="Neto" /note="D-X-S-D-E motif; other site" /db_xref="CDD:238060" ORIGIN 1 agagcgcaga ggcaacaaaa acaaataaaa acaacaattt gaaaaaccga ccgaaggaga 61 taaacataaa taaataatct gaagtggatg gttggatagt cgggaaaact aaggactggc 121 aaattaaaaa ataaatggcg catgattaac aaacggtctg ctgctcgtcg ggatttttgc 181 gttacgtgtg aaggactctc actgccagcg gagaagtgag aggaggctag agagagaggg 241 agacggagac aataagactg aaaagctggc aaaccttaca caaaatgcga ggaagaagaa 301 gcacgggcgg cgtacaacaa ccacagcagc ggccacacga acagcaacag cagccaaatc 361 aaaggttaat ccatggccca cgctgctcgc tgctaatgtt gctaattgtt ggccacgcag 421 tttacgcttc tgccggcagt gaggtaatca caaatcgctc gacgccaacg gacgaatcgc 481 tgacactacc gctgacacta ccgctgacac taccgctgac cggcgaccgc ccaccgaatg 541 tcaccctgtc gcgcctcttt tcccgcccct tccgggagcc ggatgtggcc gagggggagg 601 gggagggtgg cgactggggg gaggcgcagc ttccgcagac catctcccga ccaccgagag 661 cgggacgcag cgcgcggcag gcggaggagg atcaggtgga ccgctgccgg ctgttcgtcg 721 agggggatcc caccaagaac gagctgtaca gccccgagta tcccaatctc tatccgaaga 781 acatcaactg cacaagggtg ataacagcgc caaagggaca aatcatacgc ctggactttc 841 gcaactcgtt taatatcgag gacaaggagg agtgcaaatt tgattttctc gaaatacggg 901 acggccagta cggcttctcc cagctgctgg gcaagttctg cggcaccaac ttcccgccgg 961 agctcacctc caaggagcgc tacctgtggc tgcacttcca ctccgacgag accatcgagt 1021 acaccggctt cagtgcggtc tacgagtacc tcgataggaa cagggaggcg gccagcactg 1081 atctcaactg caccatcgag aagggcggct tcgaggggtt catcaactcg acagacgtac 1141 cggcggagat ccgggagcag gtcatccaca gcaagatcgc cttggactgc atctggcgca 1201 tccaggtgaa ggagaactgg aagatatatc tcaagtttct ggactttaag ctgagcaagc 1261 cgaacgattg cgacaccaac tttcttgata tattccccga acagacggtg atgccgcgca 1321 gggtgaagaa cttttgtggt tcggctggcg aaagtattac ggccgagtca aacatcctgc 1381 acttgcgctt ctacgcagat caaatcgcga ttaactcgac attcggcatt ctgttcacgg 1441 ctttccggga caagggacct gcgggagcct gcgccgagga cgagtacgat tgcgaggacg 1501 cgacctgcat atcaaaggat ttgaaatgta ataacctaga caattgtaaa tttcgatggg 1561 acgaggagga ctgcaagggc gacgcaaacg gccaatcgga gcatgtggtc atcatcgtga 1621 ccgtgtttgg cctgatactc ggcggcatgg tcctaacgtt catcgtcaat tgcacacgca 1681 agataatacg tgatcagaag ataatacgcg agcacatccg agagtccaag gagagcaagc 1741 tggacgagat gggccgcaac tccaagggtc gttcgcgcga gaacatctcc aggcaaaagc 1801 actcgcagac ctcgctgcag atcctggacg acgtgtcgaa ccgctattac cgcgaggccg 1861 tccccctgtc gacgcagtcg agcaaggcgg acttcaagga gaaggagcac agcatcctgc 1921 gccggcacgc ggatatgacc caaacgagtc tctgcgagga cgacggcgag tccagctcga 1981 cgaccacggc cacccacgag ctgatgacta aggcggccat gtcggcggtg ccctcgaatg 2041 cctgcgatat gggctgtcag acgagggaat cgctgtttgt caacagtccc ggaattggac 2101 cgtcggcggg tgttggcgtt gccgttggca ttggtattgc tgttgctccc ggcggcggtg 2161 ttgcgacgct aatgagacaa aagtccagct cctcatcgct gggcgggcac agcggctcgg 2221 ggggcggggc catgatgatg ccgcccccgc cgcagcgctt cttctccacc tttggctacg 2281 agccatccgg atcgccggcg gtggcaacgc tgacaagacg cagcatgcat cagcagcatc 2341 cgcagcagca gcagcagcag caacatcacc agctgcctcg ccaggagtcc atggagatgg 2401 aggagcgaca cagcggccgc tcgcattacg gcggactctt ggtggcctcg acggtcaagc 2461 agccgcagga gatctgtcac catcatcacc agcaccagca gcagcaccag caacagcagc 2521 aacagcagca acatatacag cagcaacagc aacagcagcg aatgcaccac gcacatccgc 2581 atccgccgag cattgctgcc cgtctgccca cgatgaaggg acacggggcc atgggacaga 2641 ctacgatcct gcccggcggc aacaagcagc agcatcatca gcagcaacag caacagcagc 2701 agcagcagca tcagcagaag aacgaggagt ccaaagtgtt tatcgacata cggaattcag 2761 caccagacgt gattatcatg acgtcccatt gacatttaag gatggcccgc caatcagcaa 2821 cagcaacaac aacggtagag agcaggagca acagcaacag gagcagcagc aacatcggcg 2881 gaagaagcaa ccgttacagc aactggacat cggccaacat attaaccgca gccgcagcgt 2941 cactgatgac acaacaagga caccaaggag gtggttgctt tttgtttcac cccctcgcaa 3001 catgtcactt gcaacccaaa acccccaccc acacccaccg ccccccacat ccggtttgca 3061 ttccgttgca ctcttttcgc gctttctttt ctcctcgttt ttaaagcaag gtgaacgcgc 3121 attcatttaa attgctgcag agtcgggagt ttggagttgt ttcgtaatga agagacacca 3181 aacaccaaac ttcctctgta agcattgttt tttcaaagtt tctaaagcga cttttaagta 3241 tttttcggta aagttaatga ggccacttgc tttggagcga aagataggga actatcagta 3301 tattaataca cacgtacagt tgcgtttagc ttaagaatgt tatttaaaat aatttgtatt 3361 att