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LOCUS XM_017155304 6922 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017155304 VERSION XM_017155304.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017155304.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..6922 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..6922 /gene="Set2" /note="SET domain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108066687" CDS 407..6640 /gene="Set2" /codon_start=1 /product="histone-lysine N-methyltransferase Set2" /protein_id="XP_017010793.2" /db_xref="GeneID:108066687" /translation="MEESSSSPAVASRGRGRGRPPKQVAPSQPEPPTATATPPPPDAG EDQCRRSSRKKIIKFDVRDLLNKNRKAHKIQIEARIDSNPGCSSSSSASASRLFSMFD SNQQATSKLPPPPTPPPPIALEIFAKPRATQSLIVAQVSSSEPSARKRGRPRKSQPTV VSSDSDTNSTGTGTSSTSTSGQDGQDGQEEVNRKPKSKLRVSLKRLNLSRRQESSDSG SGSGSGSTFSSPEVEVEVEVEPPALQDDNAMDEQPEPEQQQEQQMVMNEEEGNSDSDS QIIFIEIETESPKRQEEQEEQEPNLDEIMVEVLSGPPSLWSEEDQEEEEPTASSPAPR RSRRSAQPRGGGGGGSSSSQQGKTLEETFAEIAAESSKQILAAEEEVVEEEEESHVLI DLIEDSLSQPANVEEKQNQEFVIEFVEETEKETEKETETQPVVSESESPVPAKELPNQ EAPKPEAAEEIPEKLEPPTEPKDSIESAEEPQPNDEANSNSNSISMAADPKSTSKRIP MNDDIDTKLATMQVSESDTPEEKPALSAREKPPDEAEGLKSPPETETEQQEQKKAETA EPEKEVKSSPAAEERESKPLEKSSSPPEAIILKQKDEPEAIEATNSSLAMEELDKETA KSPTEADTIKKPVTDHSSCKPTKETAKEKGFSPGFVECDAMFKAMDKANAQLRLEEKS KKRQKKVPALGQKKPLGGRGGGKTTTSPPHSPKLERNSSPSSDSNQVSKLMKRSKAKK KLNPRRSTICEEAKERLAASSPVSSSNSSDSSAKRRNLPEQPAAKLDLRRNTICEDHR STPVPLTKRRFSMHPKASANPLHDTLLRSATSSASAAASAAGKKRGRKLGSSRQNSLD SSCSASKKDALLETESSESTAELEATNPLSDIAKFIEDGVNLLKRDYKVEEEEEEQQQ QEDEFAQRVANMETPATTPSPSPTQSNPEDPGNPGKLLLQENNSSSGGVRRSHRIKQK PQGQRASQGRGVASAGLAPISMDEQLAELASIEAINEQFLRSEGLNTFQPLRENYYRC ARQVSQENAEMQCDCFLTGDEEAQGHLSCGAGCINRMLMIECGPLCTNGQRCTNKRFQ QHQCWPCRVFRTEKKGCGITAELQMPPGEFIMEYVGEVIDSEEFERRQHLYSKDRKRH YYFMALRGEAIIDATSKGNISRYINHSCDPNAETQKWTVNGELRIGFFSVKPIQPGEE ITFDYQYQRYGRDAQRCYCEAANCRGWIGGEPDSDEGEQLDVSSDSEAEAEAEEVEVE DLDADAEPEKTSKGKTGRSSKIKVKLPLSQAASRKRKPKPKDREYKAGRWLKPTREKA TRKPKVSKFHAMLEDPDVLEELSLLSRSGLKNQLDTLRFSRCLVRAKLLPTRLQLLGV LTRGELPCRRLFLDYHGLRLLHAWISESGSDGQLRMALLDTLESLPIPNRTMLNDSRV YQSVQLWSNSLAEASEASEEQHKRMVALLEKWQALPEIFRIPKRERIEQMKEHEREAD RQQKHVHASTALEDQRERIGESSSNDRFRQDRFRRDTNSSRMTGSKPTRMSGNNTICT ITTQPKGSNGSSDGMARNDNRRRAEMGNPAAEPRRTLSKELRRSLFERKVALDEAEKR VCSEDWREHELRCEIFGADLNTDPKQLPFYQNADTGEWFNSEDMPVPAPQRTELLSQA LLSPETPDNGGSGQAAPPAVEYKLPAGVDPLPPAWHWRMTSDGDIYYYNLRERISQWE PPSPEQRLQTLVEEDATQQQQQPLHELQIDPALLATELIQVDLDYVGSLSSKSLAQFV EAKVRERRELRRSRLVSVRVISPRRDEDRLYNQLESRKYKENKEKIRRRKEFFRRRKI DAASAQPNSSTNPDDAAADSSNSLPIQAYLYSSDEDAPADAAPAGAAEPPLADGQTAA QAEELDSLNLAPSTSHAALAALGKTTVVGSQAAAQSAGASGKRKLPMPPNAAAAVKKH RQEHRSKKSKSSHSLLTTTSGREAHEKFRFEISGHVADFLRPYRKDSCQLGRITSDED YKFLIKRLSHHITTKEVRYCDVTGNPLSCTESVKHKSYDFINQYMRKKGRVYRKPAES TIF" misc_feature <1715..2239 /gene="Set2" /note="Prolipoprotein diacylglyceryl transferase; Region: LGT; cl00478" /db_xref="CDD:469786" misc_feature 3524..3682 /gene="Set2" /note="associated with SET domains; Region: AWS; smart00570" /db_xref="CDD:197795" misc_feature 3680..4105 /gene="Set2" /note="SET domain (including post-SET domain) found in SET domain-containing protein 2 (SETD2) and similar proteins; Region: SET_SETD2; cd19172" /db_xref="CDD:380949" misc_feature order(3713..3721,3770..3772,3800..3802,3812..3814, 3824..3826,3839..3859,3908..3922,3941..3949,3992..3994, 4025..4039,4043..4057,4061..4075,4100..4102) /gene="Set2" /note="active site" /db_xref="CDD:380949" misc_feature order(3713..3721,3839..3850,3908..3922,4031..4033, 4061..4075,4100..4102) /gene="Set2" /note="SAM binding site; other site" /db_xref="CDD:380949" misc_feature order(3770..3772,3800..3802,3812..3814,3845..3859, 3941..3949,3992..3994,4025..4039) /gene="Set2" /note="polypeptide substrate binding site [polypeptide binding]; other site" /db_xref="CDD:380949" misc_feature order(3926..3928,4067..4069,4073..4075,4088..4090) /gene="Set2" /note="Zn binding site [ion binding]; other site" /db_xref="CDD:380949" misc_feature 5501..5590 /gene="Set2" /note="WW domain; Region: WW; pfam00397" /db_xref="CDD:459800" misc_feature 6350..6610 /gene="Set2" /note="SRI (Set2 Rpb1 interacting) domain; Region: SRI; pfam08236" /db_xref="CDD:462404" polyA_site 6922 /gene="Set2" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 agaataaaaa ctcattcgat tgcagacttg tagtgtagtg tagtgcagac atgctgtttt 61 cctaaccgcc taatgaatgc ccccaatatt ctagctaaac aagcgcatac agaagacgaa 121 gaagaaggag aagaagggca gagcagagca gagaaggaaa atcgaaggga acaataacaa 181 ttaatcgaaa atcgaatgcg aatgcaagtg cagttagaaa gttagaggct gttctaactg 241 ttaactgtaa atacccgcta actttgcgat ggccccgcga aaattgttca attgaattgg 301 ccgtgtgtga aaaacaaaag ccgtacggct gctcctcctt ctgctttctg cttttaccac 361 ccacctactg cgcctactgc cagactgccc aacaaaccca gcagagatgg aggaatcctc 421 atcctcgccc gctgttgcgt cacgtggccg cggacgcgga aggccgccga aacaagtcgc 481 tcccagtcag cccgagccgc ccactgccac tgccacgccc ccgcccccgg atgctggcga 541 ggatcagtgc cgtcgcagtt cgcgcaagaa gatcatcaag ttcgatgtgc gggatttgct 601 caacaagaac cgaaaggcgc acaaaattca gatcgaagcc cgcatcgact cgaatcccgg 661 atgcagctcc tcctcctccg cctccgcgag ccgtctgttc tccatgttcg atagtaacca 721 gcaggcaacc agcaagctac cgccacctcc cactcctcct cctcccatcg ccttggagat 781 cttcgccaag ccgcgggcca cccaaagtct gattgtggcc caggtgagca gcagcgaacc 841 cagcgcccgg aagcggggac gtcccaggaa gagccagccc accgtcgtat catccgattc 901 ggacaccaat tccacgggca cgggcacgag ctccacgagc accagtggcc aggatggcca 961 ggatggccag gaggaggtca accggaagcc caagtccaag ctgcgcgtct cgctgaagcg 1021 cctgaatctc tcccgccgcc aggagtcgtc cgattccggc tctggatcgg gatcgggttc 1081 caccttctcc tcgccggagg tggaagtgga ggtggaggtg gagccgccgg cactgcagga 1141 tgacaacgct atggacgagc agccggagcc ggagcagcag caggagcagc agatggtgat 1201 gaacgaggag gagggtaact ccgattccga ttcgcagatc atattcattg aaatcgaaac 1261 ggagagtccc aaaaggcagg aggagcagga ggagcaggaa ccgaatctcg acgagatcat 1321 ggtggaggtg ctcagtgggc cgcccagcct gtggtcggag gaggatcagg aggaggagga 1381 acccaccgca tcctcgccag ctccacggcg cagcaggcga tcggcacagc cgcgcggcgg 1441 cggcggcggc gggagcagca gcagccagca gggcaagacg ctcgaggaga cgttcgccga 1501 gatagccgcc gagagcagca agcagatcct ggcagcggag gaggaggtgg ttgaggagga 1561 ggaggagtcc catgtgctca tcgatctcat cgaggacagt ctcagtcagc cggcgaatgt 1621 cgaggagaag cagaatcagg agtttgtcat tgaatttgtt gaggaaacgg aaaaggaaac 1681 ggaaaaggaa acggagaccc agccagtggt ttccgaatcg gaatcgcctg ttccagcgaa 1741 agaactgccc aaccaggagg caccaaagcc agaagcagcc gaagagatcc ctgagaaact 1801 ggaaccacct acggaaccaa aagattcgat agaaagtgcg gaggagccgc agcccaatga 1861 tgaagcgaat tctaattcga attcgatttc aatggcagct gatccaaagt cgacgagtaa 1921 acgaattccg atgaacgacg atatcgacac caagttggcc acgatgcaag tgtcagaatc 1981 tgacacccca gaagaaaaac cagcactgtc agccagggaa aagcctccag atgaagcgga 2041 aggcttaaaa tccccgccag aaactgaaac agaacagcag gagcagaaga aagctgagac 2101 agctgagcca gagaaagaag ttaaatcctc accagcagct gaggaaaggg aatctaagcc 2161 actggagaaa tcctcctccc ctccagaggc gatcattctg aagcaaaaag acgagccaga 2221 agcaatagaa gccaccaatt cttcattagc gatggaggag ctcgataaag aaactgccaa 2281 aagtccaaca gaagccgaca caatcaagaa gcccgtaacc gatcattcct cctgcaagcc 2341 gactaaggag acggccaagg agaagggatt ctcgcccggc ttcgttgagt gcgatgccat 2401 gttcaaggcc atggacaagg cgaatgccca gctgcgtctc gaggagaaga gcaagaagag 2461 gcagaagaaa gtgcccgctc ttggccaaaa gaagccgctg ggaggcagag gaggaggcaa 2521 gaccaccaca tcaccacctc attcgcccaa gctggagagg aacagctcgc cgagctccga 2581 ttccaaccaa gtgagcaagc tgatgaagcg ttcgaaggcc aaaaagaagc tcaatccgcg 2641 acgcagcacc atttgtgagg aggccaagga gaggctggcc gccagttcgc ccgtttcctc 2701 ctcgaattca tcggattcct ccgcgaagcg aaggaatctt cccgagcagc cagcagccaa 2761 gttggatctg cgccgcaaca ccatctgcga ggatcaccgg agcactccgg tgccgctgac 2821 caagcgccgc ttctccatgc atcccaaggc ctccgcgaat cccctgcacg acaccctcct 2881 gcgatcggcg acttcatctg catctgcagc tgcatctgcc gccggcaaga agcgtggtcg 2941 aaagctgggt tcgagtcgcc agaactcgct ggactccagt tgcagtgcct cgaagaagga 3001 tgccctcttg gaaacggagt cctccgagtc cacagccgag ctggaggcaa ccaatccgct 3061 cagcgacata gccaagttta tcgaagacgg cgttaatctt ctcaagcgcg actacaaagt 3121 ggaggaggag gaggaggagc agcagcagca ggaggacgag tttgcgcaac gagtggccaa 3181 tatggagacg ccggccacca caccctcgcc ctcgcccacg caatccaatc cagaggatcc 3241 cggcaatccc ggcaagctgc tgcttcagga aaataatagt agcagcggcg gagtgcgtcg 3301 ctcgcatcgc atcaagcaga agccccaggg gcagcgggcc agccagggaa gaggggtggc 3361 cagcgccggg ctggcaccga tcagcatgga cgagcagctg gccgagttgg ccagcatcga 3421 ggcgataaac gagcagttcc tccgcagcga gggactcaac acgtttcagc cgctaaggga 3481 gaactactac cgatgcgcca ggcaggtcag ccaggaaaac gccgagatgc agtgcgactg 3541 cttcctcacc ggcgacgagg aggcccaggg ccatctgagc tgcggcgccg gctgcatcaa 3601 tcgcatgctg atgatcgagt gcggcccgct gtgcaccaac ggccagcgct gcacgaacaa 3661 gcgcttccag cagcaccagt gctggccctg ccgcgtcttt cgcaccgaga agaagggctg 3721 cggcatcacc gcggagctgc aaatgccgcc cggcgagttc atcatggagt acgtcggcga 3781 ggtgatcgac agcgaggagt tcgagcggcg gcagcacctc tattcgaagg accgcaagcg 3841 gcactactac ttcatggcgc tgcgcggcga ggcgatcatc gatgccacct ccaaggggaa 3901 tatatcgcgg tacatcaacc acagctgcga tccgaatgcc gagacccaga agtggacggt 3961 caacggcgag ctgcgcatcg gcttcttcag cgtgaagccc attcagccgg gcgaggagat 4021 caccttcgac tatcagtatc agcggtacgg acgcgatgcg cagcgctgct actgcgaggc 4081 ggccaactgc aggggctgga ttggcggcga gccggactcc gatgagggtg agcagctgga 4141 cgtgagcagc gacagcgagg cggaggcgga ggccgaggag gtggaggtgg aggacctcga 4201 tgcggatgcg gagcccgaga agacgtcgaa ggggaagacg ggcaggtcta gcaaaatcaa 4261 ggtgaagctg ccgctctcgc aggctgccag tcgcaagcgg aagcccaagc ccaaggatcg 4321 ggaatacaag gccggccgct ggctgaagcc gacgagggag aaggcgacgc ggaagccgaa 4381 ggtcagcaag ttccatgcca tgctcgagga tcccgatgtg ctcgaggagc tgtcgctgct 4441 cagccgcagc ggtctgaaga accagctgga cacgctgcgc ttctcgcgct gcctggtccg 4501 cgccaagctg ctaccaacgc gcctccagct gctcggagtt ctaacgcgcg gcgagctgcc 4561 ctgccgccgg ctcttcctcg actaccacgg cctgcggctg ctgcacgcct ggatcagcga 4621 gagcggcagc gatggccagc tgcgaatggc cctgctcgac accctcgagt cgctgcccat 4681 tccgaatcgc accatgctga acgacagccg cgtctaccag agcgtccagc tgtggagcaa 4741 cagcttggcg gaggcgtcgg aggcgtcgga ggagcagcac aaacggatgg tggccctgct 4801 ggagaagtgg caagcgctgc ccgagatctt tcgcataccc aagcgcgagc gcatcgagca 4861 gatgaaggag cacgagcggg aggccgaccg ccagcagaag cacgtccatg cgagcaccgc 4921 tctggaggat cagcgcgagc ggattggcga gagcagcagc aacgatcgct tccggcagga 4981 tcgctttcgc cgggacacga acagcagtcg catgactggc agcaagccga caaggatgag 5041 cggcaacaat acgatatgca cgatcaccac gcagccgaag ggcagcaatg gatcctcgga 5101 cggcatggcc aggaacgata atcgccgacg ggcggagatg ggtaatcccg ccgcggagcc 5161 acgacgcacg ctgtccaagg agctcaggcg cagtctgttc gagcggaagg ttgccctcga 5221 tgaggccgag aaacgggttt gcagcgagga ctggcgggag cacgagctgc gctgcgagat 5281 ctttggcgcc gatctcaaca cggatcccaa gcagctgccc ttctatcaga acgcggacac 5341 gggcgaatgg ttcaacagcg aggacatgcc agtgccagcg ccgcagcgca cagagctcct 5401 ctcgcaggcg ctgctctcgc ccgaaacgcc ggacaacggc ggcagcggac aggcagctcc 5461 gccggccgtc gagtacaagc tgccggccgg cgtggatccc ctgccgcccg cctggcactg 5521 gcggatgacc agcgacggcg acatctacta ctacaatctg cgcgaacgca tctcgcaatg 5581 ggagccgccc agtcccgagc agcgcctcca gactttggtc gaggaggatg cgacgcagca 5641 gcagcagcag ccgcttcacg agctccagat cgatcccgcg ctcctggcca ccgagctcat 5701 ccaggtggac ctcgattacg tgggctcgct cagctccaag tccctggccc agtttgtcga 5761 ggccaaggtg cgggagcggc gcgagctgcg acgcagtcgc ttggtctccg tccgtgtgat 5821 tagtccgcga cgagacgagg atcgcctgta caatcagctg gagtcgcgaa agtacaagga 5881 gaacaaggag aagatccgcc gtcgcaagga gttcttccgt cgccgcaaga tcgacgctgc 5941 ttctgctcag ccgaattcct cgacgaatcc agacgatgct gccgccgata gcagcaattc 6001 actgcccatt caggcctacc tgtactcatc cgacgaggat gctcccgcgg atgctgctcc 6061 agctggagct gcggagccgc ccctcgccga tgggcagact gcggcccagg cggaggagct 6121 ggattcactt aacttggcgc cgagcaccag tcatgcggct ctggccgctc tcggcaagac 6181 cacagtcgtc ggcagtcagg cggcggcaca atcagccgga gcaagtggca agcgcaagct 6241 gccaatgcca ccgaatgcgg cggcggcggt gaagaagcat cgccaggagc accgcagcaa 6301 gaagagcaaa agctcgcaca gccttttgac gaccaccagc ggacgcgagg cccacgagaa 6361 gttccgcttc gaaataagcg ggcatgtcgc cgactttctg cgaccctatc gcaaggacag 6421 ctgccaactg ggtcggatca ccagcgacga ggactacaag ttcttaatta agaggctcag 6481 ccatcatatt accaccaagg aagtgcgcta ttgcgacgtc accggcaatc ccttgtcctg 6541 cacggagtcg gtcaagcaca agtcctacga cttcatcaac cagtacatgc gaaagaaggg 6601 ccgcgtctat cggaaaccag cggaaagcac tatattctag cacacccaat tcaacggcgg 6661 gaggacatgt ccttcttttt cttcttcact taatacccaa ccaaattgcg catgaactaa 6721 gaactaaaaa cgtataataa ctataactat aactagaatt ttattttaag tgcaaacctt 6781 agataagaac aaacccctta gtatgcgatc taccctcgaa gcgggtagcg tcttaagtga 6841 aaaccactag aacattatga atcttaaaga gagagttaga gaattattaa atacacggaa 6901 aataaatgga aaatcacaca ta