PREDICTED: Drosophila takahashii Troponin T, skeletal muscle (up),

LOCUS       XM_017155299            1645 bp    mRNA    linear   INV 09-DEC-2024
            transcript variant X11, mRNA.
ACCESSION   XM_017155299
VERSION     XM_017155299.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017155299.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1645
                     /gene="up"
                     /note="Troponin T, skeletal muscle; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 1
                     Protein"
                     /db_xref="GeneID:108066684"
     CDS             171..1292
                     /gene="up"
                     /codon_start=1
                     /product="troponin T, skeletal muscle isoform X11"
                     /protein_id="XP_017010788.1"
                     /db_xref="GeneID:108066684"
                     /translation="MSDDEEYTGEGDPEFIKRQDQKRSDLDDQLKEYITEWRKQRSKE
                     EDELKKLKEKQAKRKVTRAEEEQKMAQRKKEEEERRVREAEEKKQREIEEKRMRLEEA
                     EKKRQAMLQAMKDKDKKGPNFTIAKKDAGLGLSSAAMERNKTKEQLEEEKKISLSFRI
                     KPLAIEGFGESKLREKAQELWELIVKLETEKYDLEERQKRQDYDLKELKERQKQQLRH
                     KALKKGLDPEALTGKYPPKIQVASKYERRVDTRSYDDKKKLFEGGYNTVYAETLEKTW
                     QERQERFTQRTKSKLPKWFGERPGKKAGEPETPEGEEDAKADEDIVEDDEEVEEEVVE
                     EEDEEAEEDEEEEEEEEEEEEEEEEEEEEEEEEEEEEEE"
     misc_feature    <216..>836
                     /gene="up"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    564..>797
                     /gene="up"
                     /note="Region: Troponin; pfam00992"
                     /db_xref="CDD:460018"
     polyA_site      1645
                     /gene="up"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atggcttttc cgcgaacgcg accaaaaatt ctttaacata acgtgtagca gcgcttttca
       61 tcgtcagtct gtttagtcga accgcagcat tcgctcctac gacgtcagct gctcggactt
      121 caattcaatt tgtttttctc cctaagtttt ttcaacccta aaccgtagcc atgtccgacg
      181 atgaagagta cacaggagag ggcgacccag agttcatcaa gcgtcaggac cagaagcgct
      241 ccgacctcga tgatcagctg aaagaataca tcaccgagtg gcgcaaacag agatccaagg
      301 aggaggatga gctgaagaag ctgaaggaga agcaggccaa gcgcaaggtc acccgcgccg
      361 aggaggagca aaagatggcc cagcgcaaga aggaggagga ggagcgccgt gtccgcgagg
      421 ccgaggagaa gaagcagcgc gagatcgagg agaagcgcat gcgcctcgag gaggccgaga
      481 agaagcgcca ggctatgctg caggccatga aggacaagga caagaagggc cccaacttca
      541 ccattgccaa gaaggatgca ggcttgggac tctcgtccgc cgccatggaa cgcaacaaga
      601 ctaaggaaca gttggaggag gagaagaaga tctcgctgtc gttccgcatc aagcccttgg
      661 ccatcgaagg attcggcgag tctaagctgc gcgagaaggc ccaggagctg tgggagctca
      721 ttgtcaaatt ggaaactgag aagtatgact tggaagaaag gcagaaacgt caggactacg
      781 atttgaaaga gttgaaggaa agacagaagc aacagctcag gcacaaagcc ttgaagaagg
      841 gtctcgaccc ggaagctttg actggcaaat acccgcccaa gattcaagtc gcctccaagt
      901 atgagcgacg tgtggatacc cgctcatatg acgacaagaa gaagctcttc gagggtggct
      961 ataatacggt ctatgcggaa accttagaaa agacctggca agaaagacag gaaagattta
     1021 ctcagcgcac aaaatccaaa ctgccaaagt ggttcggcga gcgaccaggc aagaaggccg
     1081 gtgagcccga gacacccgag ggcgaggagg acgccaaggc cgatgaggac atcgtcgagg
     1141 atgatgagga ggtcgaggag gaggtcgtcg aggaggagga tgaggaggcc gaggaggatg
     1201 aggaggaaga ggaggaggaa gaggaggagg aagaggaaga ggaggaggaa gaggaggagg
     1261 aggaagaaga ggaagaggag gaggaggaat agaccaatcc acactctggg cccgccctcg
     1321 cgcaccactt tccttcacca cttttcgtaa aaacaaacac tctacattta aataccaaag
     1381 ccaaacaatt ttaataaaag taaaagaatg aactaaatag ttatgatata tcttagctta
     1441 ttcgcccaac aacttgctat tcaaaatcaa aaactcaaca tcttttttat tgaatcgaga
     1501 aatgtaagat ttctttaaaa taaaacatca aaaccaacac caactaagtc aaatactagc
     1561 aaaaccaaaa acaagcaacc aaaaaaaaaa ataagagaaa caatcaagat attaaagtgt
     1621 gttatggcat catatctatg aacaa