PREDICTED: Drosophila takahashii Troponin T, skeletal muscle (up),

LOCUS       XM_017155285            1717 bp    mRNA    linear   INV 09-DEC-2024
            transcript variant X1, mRNA.
ACCESSION   XM_017155285
VERSION     XM_017155285.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017155285.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1717
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..1717
                     /gene="up"
                     /note="Troponin T, skeletal muscle; Derived by automated
                     computational analysis using gene prediction method:
                     Gnomon. Supporting evidence includes similarity to: 3
                     Proteins"
                     /db_xref="GeneID:108066684"
     CDS             171..1364
                     /gene="up"
                     /codon_start=1
                     /product="troponin T, skeletal muscle isoform X1"
                     /protein_id="XP_017010774.1"
                     /db_xref="GeneID:108066684"
                     /translation="MSDDEEYTSSEEEEVVEETREETKPPQTPAEGEGDPEFIKRQDQ
                     KRSDLDDQLKEYITEWRKQRSKEEDELKKLKEKQAKRKVTRAEEEQKMAQRKKEEEER
                     RVREAEEKKQREIEEKRMRLEEAEKKRQAMLQAMKDKDKKGPNFTIAKKDAGVLGLSS
                     AAMERNKTKEQLEEEKKISLSFRIKPLAIEGFGESKLREKAQELWELIVKLETEKYDL
                     EERQKRQDYDLKELKERQKQQLRHKALKKGLDPEALTGKYPPKIQVASKYERRVDTRS
                     YDDKKKLFEGGWDAISKDSSEKIWNEKKEQYTGRQKSKLPKWFGERPGKKAGEPETPE
                     GEEDAKADEDIVEDDEEVEEEVVEEEDEEAEEDEEEEEEEEEEEEEEEEEEEEEEEEE
                     EEEEE"
     misc_feature    <285..>908
                     /gene="up"
                     /note="Chromosome segregation ATPase Smc [Cell cycle
                     control, cell division, chromosome partitioning]; Region:
                     Smc; COG1196"
                     /db_xref="CDD:440809"
     misc_feature    636..>869
                     /gene="up"
                     /note="Region: Troponin; pfam00992"
                     /db_xref="CDD:460018"
     polyA_site      1717
                     /gene="up"
                     /experiment="COORDINATES: polyA evidence [ECO:0006239]"
ORIGIN      
        1 atggcttttc cgcgaacgcg accaaaaatt ctttaacata acgtgtagca gcgcttttca
       61 tcgtcagtct gtttagtcga accgcagcat tcgctcctac gacgtcagct gctcggactt
      121 caattcaatt tgtttttctc cctaagtttt ttcaacccta aaccgtagcc atgtccgacg
      181 atgaagagta caccagctcc gaggaggagg aggttgtcga ggagacccgc gaggagacaa
      241 aaccacctca gacaccagcc gaaggagagg gcgacccaga gttcatcaag cgtcaggacc
      301 agaagcgctc cgacctcgat gatcagctga aagaatacat caccgagtgg cgcaaacaga
      361 gatccaagga ggaggatgag ctgaagaagc tgaaggagaa gcaggccaag cgcaaggtca
      421 cccgcgccga ggaggagcaa aagatggccc agcgcaagaa ggaggaggag gagcgccgtg
      481 tccgcgaggc cgaggagaag aagcagcgcg agatcgagga gaagcgcatg cgcctcgagg
      541 aggccgagaa gaagcgccag gctatgctgc aggccatgaa ggacaaggac aagaagggcc
      601 ccaacttcac cattgccaag aaggatgcag gcgtgttggg actctcgtcc gccgccatgg
      661 aacgcaacaa gactaaggaa cagttggagg aggagaagaa gatctcgctg tcgttccgca
      721 tcaagccctt ggccatcgaa ggattcggcg agtctaagct gcgcgagaag gcccaggagc
      781 tgtgggagct cattgtcaaa ttggaaactg agaagtatga cttggaagaa aggcagaaac
      841 gtcaggacta cgatttgaaa gagttgaagg aaagacagaa gcaacagctc aggcacaaag
      901 ccttgaagaa gggtctcgac ccggaagctt tgactggcaa atacccgccc aagattcaag
      961 tcgcctccaa gtatgagcga cgtgtggata cccgctcata tgacgacaag aagaagctct
     1021 tcgagggtgg ctgggacgcc atctccaagg actcgagcga gaagatctgg aacgagaaga
     1081 aggagcaata caccggccgt caaaaatcca aactgccaaa gtggttcggc gagcgaccag
     1141 gcaagaaggc cggtgagccc gagacacccg agggcgagga ggacgccaag gccgatgagg
     1201 acatcgtcga ggatgatgag gaggtcgagg aggaggtcgt cgaggaggag gatgaggagg
     1261 ccgaggagga tgaggaggaa gaggaggagg aagaggagga ggaagaggaa gaggaggagg
     1321 aagaggagga ggaggaagaa gaggaagagg aggaggagga atagaccaat ccacactctg
     1381 ggcccgccct cgcgcaccac tttccttcac cacttttcgt aaaaacaaac actctacatt
     1441 taaataccaa agccaaacaa ttttaataaa agtaaaagaa tgaactaaat agttatgata
     1501 tatcttagct tattcgccca acaacttgct attcaaaatc aaaaactcaa catctttttt
     1561 attgaatcga gaaatgtaag atttctttaa aataaaacat caaaaccaac accaactaag
     1621 tcaaatacta gcaaaaccaa aaacaagcaa ccaaaaaaaa aaataagaga aacaatcaag
     1681 atattaaagt gtgttatggc atcatatcta tgaacaa