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LOCUS XM_017153840 2500 bp mRNA linear INV 09-DEC-2024 subunit su(f) (su(f)), mRNA. ACCESSION XM_017153840 VERSION XM_017153840.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153840.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2500 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2500 /gene="su(f)" /note="cleavage stimulation factor subunit su(f); Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108065715" CDS 240..2441 /gene="su(f)" /codon_start=1 /product="protein suppressor of forked" /protein_id="XP_017009329.2" /db_xref="GeneID:108065715" /translation="MSSARDLIKIDIEWGMERLVRAQQVVELRPYDIESWSVMIREAQ TRPIHEVRSLYESLVNVFPTTARYWKLYIEMEMRSRYYERVEKLFQRCLVKILNIDLW KLYLTYVKETKSGLSTHKEKMAQAYDFALEKIGMDLHSFSIWQDYIYFLRGVEAVGNY AENQKITAVRRVYQKAVVTPIVGIEQLWKDYIAFEQNINPIISEKMSLERSKDYMNAR RVAKELEYHTKGLNRNLPAVPPTLTKEEVKQVELWKRFITYEKSNPLRTEDTALVTRR VMFATEQCLLVLTHHPAVWHQASQFLDTSARVLTEKGDVQAAKIFADECANILERSIN GVLNRNALLYFAYADFEEGRLKYEKVHSMYNKLLQLPDIDPTLVYVQYMKFARRAEGI KSARGIFKKAREDVRSRYHIFVAAALMEYYCSKDKEIAFRIFELGLKRFGGSPEYVMC YIDYLSHLNEDNNTRVLFERVLSSGGLSPHKSVEVWNRFLEFESNIGDLSSIVKVERR RSAVFENLKEYEGKETAQLVDRYKFLDLYPCTSTELKSIGYAENVGIILNKVGGGVQS QNTGEVETDNEAAPPLPRPDFSQMIPFKPRPCAHPGAHPLAGGVFPQPPALAALCATL PPPNSFRGPFVSVELIFDIFMRLNLPDAAPQPNGDNELSPKIFDLAKSVHWIVDTSTY TGVQHSVTAIPPRRRRLLPGGDDSDDELQTAVPPTHDIYRLRQLKRFAKSN" misc_feature 294..1793 /gene="su(f)" /note="Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]; Region: RNA14; COG5107" /db_xref="CDD:227438" misc_feature 1365..2189 /gene="su(f)" /note="Suppressor of forked protein (Suf); Region: Suf; pfam05843" /db_xref="CDD:428647" ORIGIN 1 tatattttac ccatccctat atcgaagccg cattgtaatt ccaaacgaat tttttataat 61 tctgacgctt tcaaaagttg cgtggctctg gtgatttcgt gttgtgacag cgaggagtgc 121 gcttacaagg agggagcgac tgaggggtaa aattataacg ggcagcaaaa gggcgaaaca 181 tcgccggcta ttcgtcgcgg gaaaacaaca gcaagcagcg taggcagaaa gtaacaacaa 241 tgtcgtctgc cagggaccta atcaaaatcg acatagaatg gggaatggag cgcctggtgc 301 gggcccaaca agtggtggag cttcgtccct atgacatcga gtcctggagc gttatgatcc 361 gcgaggctca gacacgtcca atccacgagg tgcgcagcct gtatgaatct ctggttaatg 421 tatttccaac taccgcccgc tactggaagc tgtacataga gatggagatg cgcagccggt 481 actacgaacg cgtggagaaa ctcttccaac gctgcttggt caagatccta aacattgacc 541 tttggaaact ttacctgaca tacgtgaagg aaaccaagtc gggtctcagc acacacaaag 601 aaaaaatggc acaggcttat gattttgctc tggagaaaat cgggatggat ttgcactcgt 661 tcagcatctg gcaggattac atttactttc tgcgtggcgt tgaagccgtt ggaaactacg 721 cggagaacca gaaaataaca gcagtacgcc gcgtctatca aaaggcggtt gtcacaccca 781 ttgtgggcat tgagcagtta tggaaggact acatcgcttt cgaacaaaat attaatccaa 841 ttatatcgga gaagatgagt ctggagcgat caaaagacta catgaacgct cgacgtgtgg 901 ccaaagaact ggaatatcac accaagggcc ttaaccgcaa cttgcccgcc gttccgccta 961 ctctcaccaa ggaggaggtg aaacaggtgg agctgtggaa gcgctttatc acttacgaga 1021 agtccaatcc gttgcggacc gaagacacgg cgttagtcac ccgtcgcgtc atgtttgcta 1081 cggaacagtg cctgctcgtg ctcacccatc atccggccgt gtggcaccaa gcatctcaat 1141 tcttggacac cagtgcccgt gtgctcaccg agaaaggcga cgtccaggca gcaaagatat 1201 ttgcggatga gtgcgctaat attctggagc gctctattaa tggcgtactg aaccggaatg 1261 cgttgctcta tttcgcctat gctgactttg aagagggaag gttgaagtac gagaaggtgc 1321 actccatgta caacaagcta ttacagttgc cagacattga tcccactctg gtctacgtgc 1381 agtacatgaa gtttgcccgt cgtgcggagg gcataaaatc agcgcgcggc atctttaaga 1441 aagcacgcga ggacgttcgt tcgcgttatc acatcttcgt cgccgccgct ttgatggaat 1501 actattgctc caaggacaag gaaatcgcct tccgtatctt tgagctggga ctgaagcgat 1561 ttggtggcag tcccgagtac gtgatgtgct acattgacta cctgtcccat ttgaacgagg 1621 acaataacac gcgcgtctta ttcgaacgcg tactcagctc cggcggtttg tcgccgcaca 1681 agagtgtgga ggtttggaat cgcttcctcg aatttgagtc taacattggg gatctgtcca 1741 gcatcgtcaa ggtcgaacgt cgtcgtagtg ccgtcttcga gaaccttaaa gagtacgagg 1801 gcaaagagac cgcccagttg gtagaccgct ataagttcct ggacctctac ccgtgcacca 1861 gcaccgagct caagtccata ggatatgctg agaatgtggg cattatcctg aacaaggtgg 1921 gtggtggagt tcaaagccaa aacacgggag aggtcgagac ggataatgag gctgctccac 1981 cgctgccacg tccggacttc tctcagatga ttccgttcaa gccgcgtccc tgcgctcatc 2041 ctggtgccca tccacttgca ggcggcgtat ttccgcaacc gccggctctg gccgctttat 2101 gtgccaccct gcctccacca aactcctttc gcgggccctt tgtcagcgtg gagttgatat 2161 tcgatatctt catgcggctt aatctgcccg acgctgcacc gcaaccgaat ggagacaacg 2221 aattgtcgcc aaagatcttt gatttggcca agtcagtgca ctggatcgtg gacacgagta 2281 cctatacggg tgtgcagcat agtgttacgg ccattccacc gcgtcgacga cgtctgttgc 2341 ccggtggcga cgacagtgac gacgaactgc agaccgccgt gccgcccacc cacgatattt 2401 atcggctgcg gcagctgaag cgtttcgcca agtcaaattg aggtccgccg aactgccacc 2461 tatttttgta aatttgcatt tacgagaaat atacggaaaa