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LOCUS XM_017153827 1617 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017153827 VERSION XM_017153827.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153827.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1617 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1617 /gene="Tsp5D" /note="Tetraspanin 5D; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108065706" CDS 26..877 /gene="Tsp5D" /codon_start=1 /product="tetraspanin-9" /protein_id="XP_017009316.1" /db_xref="GeneID:108065706" /translation="MGNAGYTCIRRTFCWLNIILWLCSCAFLGAGLWLRLSYEGYATL LPQHAGLSADTIFMGIGGTGFVVSFFGCCGAWVQSRCLLVLYFMLIVMLFMSEFLVGS IAFLFRGGLGRTLANELRFGIERHYNTSDRGSLVAPSVASIWDSVQHSFECCGVSSYE DWYDIQSWPGKRWVPESCCRTLYDQRQVLTEGSGDGMMRADCGRSENPSLWWDKGCAH SLQSWFTGQLNVVGAVGLGIAFVQLFGLITSMLLFCTVKHKRASDTYKSYSPSIDPQT RTSSWED" misc_feature 50..787 /gene="Tsp5D" /note="Tetraspanin family; Region: Tetraspanin; pfam00335" /db_xref="CDD:459767" misc_feature 338..709 /gene="Tsp5D" /note="Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model...; Region: NET-5_like_LEL; cd03165" /db_xref="CDD:239418" misc_feature order(341..343,356..358,368..370,374..379,386..388, 452..454,461..466,473..478) /gene="Tsp5D" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:239418" polyA_site 1617 /gene="Tsp5D" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcagatccat tagcaagatc ccgccatggg caatgccggc tatacctgca tacgccgcac 61 tttctgctgg ctcaacatca ttctttggct gtgtagctgt gcgtttttag gagccggact 121 gtggctgcgt ctgagctacg agggctacgc caccctgctg ccccaacacg ccggcctgag 181 tgcggacacc atcttcatgg gcatcggggg caccgggttc gtggtcagct tcttcggctg 241 ctgcggcgcc tgggtgcaat cccgctgcct cctggtactg tacttcatgc tgattgtgat 301 gctgttcatg agcgagttcc tggtgggctc gatcgccttt ctcttccgcg gcggcttggg 361 tcggactttg gccaacgagc tgcgcttcgg gatcgagcgg cactacaaca ccagcgaccg 421 gggatctttg gtggcgcctt cggtggcctc catttgggac agtgtgcagc attcgtttga 481 gtgctgcggc gtttcctcgt acgaggattg gtacgacatc cagtcgtggc cgggaaaacg 541 ctgggtgccc gagtcctgct gcaggaccct ctatgaccag cgccaggtgc tcaccgaagg 601 atccggcgac ggaatgatgc gcgctgactg cggcagatcc gagaatccgt cgctgtggtg 661 ggacaaaggc tgcgcccatt cgctgcagag ctggtttacg ggtcaactga acgttgtggg 721 cgccgtggga ctggggatcg cctttgtcca gctcttcggg ctgatcacct cgatgctgct 781 gttctgcacg gtgaagcaca aacgggcctc ggacacctac aagtcgtact ccccgtctat 841 cgatccccag acccgcacca gcagttggga ggattgaacg cgcctgtaac tgggcggtgg 901 acgaacttct aaattggggg gagggttcgg ggtcggaatc gaatcccccc aaactctgtc 961 gctatctcta tgttcttttt gttaactctc ctagtttcta attcattctg cgaaatgtgc 1021 caaaaattaa tttaattcaa agtgtatttt tttgtttttt tatttgtaat ctgtaggcga 1081 agacatatcg aacaaaattt agggggctaa gatggtgttg gctccaagtg accaaatcac 1141 acatttacca agatgattag ttagcggtgt atccatattg tgatgtgctc tctagtagta 1201 tatagtatat ggcccaagac ccgtacagtg cgtttcatac ttatctggca agcagagtta 1261 ccagctagtg tgaacggggc ttaggaccaa caaaatatgc tcgtaaccct ttaactaaaa 1321 caatatgtaa cctatactat acaattatac ttatgttact ttatggaact ttgtagtatt 1381 cgaaatagca gaaaccgcaa ctgcccgaaa agcatgaaaa cccagaagac gaagaggaat 1441 acaatgagga agagaaagag ggaggggaat agttaaagca aatattatta ctactatgag 1501 tatgattatt ttatttatac atacaaatat atttatatat cgaaatacat tcctacacaa 1561 catgttcgtg ttaagttaca aataaattaa agtatttatt taaattacaa acaaaaa