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LOCUS XM_017153826 1860 bp mRNA linear INV 09-DEC-2024 variant X1, mRNA. ACCESSION XM_017153826 VERSION XM_017153826.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153826.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1860 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1860 /gene="Tsp5D" /note="Tetraspanin 5D; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108065706" CDS 269..1120 /gene="Tsp5D" /codon_start=1 /product="tetraspanin-9" /protein_id="XP_017009315.1" /db_xref="GeneID:108065706" /translation="MGNAGYTCIRRTFCWLNIILWLCSCAFLGAGLWLRLSYEGYATL LPQHAGLSADTIFMGIGGTGFVVSFFGCCGAWVQSRCLLVLYFMLIVMLFMSEFLVGS IAFLFRGGLGRTLANELRFGIERHYNTSDRGSLVAPSVASIWDSVQHSFECCGVSSYE DWYDIQSWPGKRWVPESCCRTLYDQRQVLTEGSGDGMMRADCGRSENPSLWWDKGCAH SLQSWFTGQLNVVGAVGLGIAFVQLFGLITSMLLFCTVKHKRASDTYKSYSPSIDPQT RTSSWED" misc_feature 293..1030 /gene="Tsp5D" /note="Tetraspanin family; Region: Tetraspanin; pfam00335" /db_xref="CDD:459767" misc_feature 581..952 /gene="Tsp5D" /note="Tetraspanin, extracellular domain or large extracellular loop (LEL), NET-5_like family. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment model...; Region: NET-5_like_LEL; cd03165" /db_xref="CDD:239418" misc_feature order(584..586,599..601,611..613,617..622,629..631, 695..697,704..709,716..721) /gene="Tsp5D" /note="dimer interface [polypeptide binding]; other site" /db_xref="CDD:239418" polyA_site 1860 /gene="Tsp5D" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 acaaccgcgg cgagcgcata gaatacgcaa aacgaatttc gaatcccccc aaaaaataaa 61 aaccctcctt agatccgatt atccgaatca gaagtgcaga accaaagaaa cgaacaggaa 121 atcggaaatt cttgtacaaa ttaattgggc caatttgttg ttttttttcg agttcaattc 181 tgtgttaaaa agtgcaaata aaaatcctta aaaaaatctg ctataatccc gagaaccaca 241 tatttcgacc catagccaaa atcccgccat gggcaatgcc ggctatacct gcatacgccg 301 cactttctgc tggctcaaca tcattctttg gctgtgtagc tgtgcgtttt taggagccgg 361 actgtggctg cgtctgagct acgagggcta cgccaccctg ctgccccaac acgccggcct 421 gagtgcggac accatcttca tgggcatcgg gggcaccggg ttcgtggtca gcttcttcgg 481 ctgctgcggc gcctgggtgc aatcccgctg cctcctggta ctgtacttca tgctgattgt 541 gatgctgttc atgagcgagt tcctggtggg ctcgatcgcc tttctcttcc gcggcggctt 601 gggtcggact ttggccaacg agctgcgctt cgggatcgag cggcactaca acaccagcga 661 ccggggatct ttggtggcgc cttcggtggc ctccatttgg gacagtgtgc agcattcgtt 721 tgagtgctgc ggcgtttcct cgtacgagga ttggtacgac atccagtcgt ggccgggaaa 781 acgctgggtg cccgagtcct gctgcaggac cctctatgac cagcgccagg tgctcaccga 841 aggatccggc gacggaatga tgcgcgctga ctgcggcaga tccgagaatc cgtcgctgtg 901 gtgggacaaa ggctgcgccc attcgctgca gagctggttt acgggtcaac tgaacgttgt 961 gggcgccgtg ggactgggga tcgcctttgt ccagctcttc gggctgatca cctcgatgct 1021 gctgttctgc acggtgaagc acaaacgggc ctcggacacc tacaagtcgt actccccgtc 1081 tatcgatccc cagacccgca ccagcagttg ggaggattga acgcgcctgt aactgggcgg 1141 tggacgaact tctaaattgg ggggagggtt cggggtcgga atcgaatccc cccaaactct 1201 gtcgctatct ctatgttctt tttgttaact ctcctagttt ctaattcatt ctgcgaaatg 1261 tgccaaaaat taatttaatt caaagtgtat ttttttgttt ttttatttgt aatctgtagg 1321 cgaagacata tcgaacaaaa tttagggggc taagatggtg ttggctccaa gtgaccaaat 1381 cacacattta ccaagatgat tagttagcgg tgtatccata ttgtgatgtg ctctctagta 1441 gtatatagta tatggcccaa gacccgtaca gtgcgtttca tacttatctg gcaagcagag 1501 ttaccagcta gtgtgaacgg ggcttaggac caacaaaata tgctcgtaac cctttaacta 1561 aaacaatatg taacctatac tatacaatta tacttatgtt actttatgga actttgtagt 1621 attcgaaata gcagaaaccg caactgcccg aaaagcatga aaacccagaa gacgaagagg 1681 aatacaatga ggaagagaaa gagggagggg aatagttaaa gcaaatatta ttactactat 1741 gagtatgatt attttattta tacatacaaa tatatttata tatcgaaata cattcctaca 1801 caacatgttc gtgttaagtt acaaataaat taaagtattt atttaaatta caaacaaaaa