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LOCUS XM_017153791 1989 bp mRNA linear INV 09-DEC-2024 somatic cells (Lint-O), transcript variant X1, mRNA. ACCESSION XM_017153791 VERSION XM_017153791.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153791.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..1989 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..1989 /gene="Lint-O" /note="L(3)mbt interactor in ovarian somatic cells; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108065683" CDS 70..1479 /gene="Lint-O" /codon_start=1 /product="neurofilament heavy polypeptide isoform X1" /protein_id="XP_017009280.2" /db_xref="GeneID:108065683" /translation="MKRTKDEDKEEAPAQPAAHNSSAGSNGHEATSPVATNAPATATT SSAAVLDASLTGSSVRTTGRVKKPKQVYDPSDNYVSRASSNRNSLGGAAGSLAAAAAN AQSPPASATAKEASDSQDSTPSPAVSEQQQQQAAQNRNFDTCQKCAKSEPKRGSGHKS NFLTCKGCMQKWHFPCLPVHFQNQSMARKKYKCEKCRYCQVCNVRGRDLAICSSCVEA YHADCNDPTIKQSKSVDTNPKWKCFRCEASGNSGNNTSPSSEEQAGGRKSNASREEQP AVPRKSNAGRKKRVQSDPTGQEKPAKIEKLGKRSPPLKTDEKREKREEKKESKEEKKE ELLEQPAEVKVEKVEKQEEIEPVPENKNQPEPNQEAEPSRLSPPPPAAAGSPVDIKCQ PVSTWSVEQVVGFVAKHYPKEANVFRYQDIDGASLLLLTRQDVMNGFGLKLGPALRVF ELVMSLQSRSDDVRLAWFE" misc_feature 496..657 /gene="Lint-O" /note="PHD zinc finger; Region: PHD; smart00249" /db_xref="CDD:214584" misc_feature 655..804 /gene="Lint-O" /note="PHD finger superfamily; Region: PHD_SF; cd15489" /db_xref="CDD:276966" misc_feature order(694..705,715..717,787..789) /gene="Lint-O" /note="histone H3 binding site [polypeptide binding]; other site" /db_xref="CDD:276966" misc_feature 1249..1452 /gene="Lint-O" /note="SAM (Sterile alpha motif); Region: SAM_superfamily; cl15755" /db_xref="CDD:472832" polyA_site 1989 /gene="Lint-O" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcgaccgagc gcgcaagtaa tttttgtttt gttttgtttg caccgctttc cgaggactca 61 ccggccacca tgaagcgaac caaggacgag gacaaggagg aggcgccggc ccaaccggcg 121 gcgcacaaca gcagcgccgg cagcaacggc cacgaggcca catctccggt ggccaccaat 181 gcgccggcga cggcgaccac ttcatccgca gccgttttgg atgcatcgct aaccggatcc 241 tccgtccgca cgacgggtcg cgtcaagaaa cccaagcagg tgtacgatcc ctcggacaac 301 tatgtgtccc gggccagcag taatcgcaac tccctcggcg gagcagccgg ctccttagcc 361 gcggccgccg ccaatgctca gtcaccacca gccagtgcga cggccaaaga ggccagcgat 421 tcgcaggact ccacacccag tccggccgtt tccgagcagc agcagcagca ggcggcgcag 481 aatcgcaact tcgacacgtg ccagaagtgt gccaaaagcg aacccaaacg cggttccggc 541 cacaagagca acttcctcac ctgcaaagga tgcatgcaga aatggcactt tccgtgtctc 601 ccagttcact tccagaacca aagcatggcc cgcaagaagt acaagtgcga aaagtgccgc 661 tactgccagg tgtgcaacgt gaggggccgg gatctcgcca tttgcagctc ctgcgtggag 721 gcctaccatg cggactgcaa tgatcccacc atcaagcaga gcaaatccgt cgacacaaat 781 cccaagtgga agtgcttccg atgcgaggca tccggtaata gcggtaataa caccagcccg 841 tccagcgagg agcaagcggg gggcaggaaa tcgaatgcga gccgcgagga gcagccggcg 901 gtgcccagga aatccaatgc gggccgcaag aagcgcgtcc aatccgatcc caccggtcaa 961 gagaagccgg cgaagattga gaagctgggc aaacgcagtc cgccactgaa aactgacgag 1021 aaaagagaga agagggagga aaagaaggaa agcaaggagg agaagaagga ggagctgctg 1081 gaacaaccag ctgaggtcaa ggtggagaaa gtcgagaagc aggaggagat tgagcctgtg 1141 ccggagaata agaatcagcc ggagcccaat caggaagcgg aaccctcgcg cctttcgcca 1201 ccgccacctg cagctgccgg cagtcccgtg gacattaagt gccagcccgt ttccacctgg 1261 tccgtggaac aggtcgtcgg ctttgtggcc aagcactatc caaaggaggc gaacgtgttc 1321 cgctaccagg acatcgacgg cgcctccctg ctgctgctca cccgccagga tgtgatgaac 1381 ggattcggcc tgaagctggg accggcgctg cgcgtcttcg agctggtgat gtccctgcag 1441 agtcgctccg atgacgtgag actcgcctgg ttcgagtagc gtccccacca cctctttagc 1501 atctaacacc actgtaattt taatttaata ctctcgtttg gagccctcgc tcatccggtc 1561 gcaaccaata aagcttatat taagtcttct cttctgccgg atgacttcaa tttcgttcca 1621 gtttttaaga tgtttttttc tgtaatccta cactcttgca aatgcacata ctttgtaaat 1681 gatatctgct agatttgcaa aaaataatac gacttttatt taaatacctc ttaatgagtg 1741 gaaagccaaa agtttcgcag tttattgacg ggaattcgtc aaaaaggtag ataaacccag 1801 gcacgtgaca attttgtggg caatgggcct cattaaaaac catttgggac ggtatcataa 1861 aaaagatacg agcatttaag tatgtcgact cagaattcgg cacttaagat agttttagtc 1921 ttagaaattc cgagaatata cttagcattt aaatattttt ttcaataaat caagaagtaa 1981 ttcactttt