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LOCUS XM_017153789 3587 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017153789 VERSION XM_017153789.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153789.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3587 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3587 /gene="crm" /note="cramped chromatin regulator; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins" /db_xref="GeneID:108065681" CDS 156..2900 /gene="crm" /codon_start=1 /product="protein cramped" /protein_id="XP_017009278.2" /db_xref="GeneID:108065681" /translation="MEDLCKPPPSAISIEEPFPNGGKGAGGGLLSKIELPEEELLGSV TTHNCPGTRASARVIQKMKQDQTRPMTPPPSERELSKKDEKAAQKTPSQLKTGSGKTT WTNVERNCFFDALNEFGKDFEAVANCINAKLKRRNASSDYSFKTKDQVRQHYYQTYHK ICKYVRYSEELKKPAQELYTLINYGEMRRKLQFLTEKHFMKLKQLVYQGQITVRCKGK NIRIKTPSCKALRRLNQLDDSLEDIRLPSKVEVLVTPANMEAFGRVQSLAQNPRGRII VPLHKKLISLIKTFEYKWRSANQRLHEEKSVFFPATSSANNNNEPEPAASSLDPSLCF QPRPGVAIHRPLLSITAYLSSINICLTAYEERLGFKVRSESLGSLPGITVAASKRPRT ESGSEKRSPETKKPKSGASPPLEKSLDEVGMEGNLVKLENSSGDELGEEIQEFLGDVE QGAPIQPTSEISLVVPETSNDPLAPPAATEPPATPAPSTSVASQPAARSKRKEAKEAA AAAQARNFKPLLSDEILKRIRKGWTEANAADITIGDLYVVFGQDSKLELEYYWCELES STAILASSSSVATQTGTSSSAVSQITASSSSSSSVNTASSSLPYNPNDCDSVERVKAV TTSSVSNRLKHLLLVANLSERVRKRQCNCGHTCDRKRDLMSKAQQLAEAAAAGGVGMA EGSFRTPMLPVRRPIANIIDPVRQLSALTRQKISRQVLVQRRLLPPASMGVRPYDLLS VRQLHSGLFEPIDRLGGTSSSGISSAGSDSSLSAALPAQQQQQQADQQFLGDGGDQGG ARDMPNLDFCVATTGSSGVSSSLAEAVQDESTTQNFFHGSVSPMHLLRDSTSNARWLE ENINDFSLTSLLGHLDEIDATRDILDPSSSMSVISESSVDFRHKFQEIAALLQQQEKD " misc_feature 459..623 /gene="crm" /note="'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is...; Region: SANT; cd00167" /db_xref="CDD:238096" misc_feature order(462..464,588..593,597..602,606..614,618..623) /gene="crm" /note="DNA binding site [nucleotide binding]" /db_xref="CDD:238096" polyA_site 3587 /gene="crm" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 tcgccatctg gtaacactgc cacctagcgg aaaaaaaaat aacatcaaca tccctggcgt 61 ctcgttaata atttcctttt atatagccat atagcaacga ttttccatgt ccgatttcta 121 ggctgtaggc gacaagcgga tgtggattgg ccaacatgga ggacctgtgc aagccgccac 181 cgtcggccat ttccatcgag gagccgtttc cgaatggagg caagggagca ggaggaggat 241 tgctctcgaa gattgagctg cccgaggagg agctgctggg ctcggtgacc acgcacaatt 301 gtccagggac gcgggccagt gcccgggtca tccagaagat gaagcaggac cagacgcgac 361 cgatgacacc gccgcccagc gaaagggagc tgagcaagaa ggacgagaag gccgcccaga 421 agacgcccag ccagctgaag acgggcagcg ggaagaccac ctggacgaat gtcgagcgca 481 actgcttctt cgatgccctg aatgagtttg gcaaggactt cgaggcggtg gccaactgca 541 tcaatgccaa gctgaagcgt cgcaacgcca gcagcgacta cagcttcaag accaaggatc 601 aggtgcgcca gcactactac cagacctacc acaagatctg caagtatgtg cgctactcgg 661 aagagctcaa gaagcccgcc caggagttgt acacgctgat taactacggc gagatgcgtc 721 gcaagctgca gttcctcacg gagaagcact tcatgaagct gaagcagctg gtctaccagg 781 gacagatcac cgtgcgctgc aagggcaaga acatccgcat caagacgccg tcgtgcaagg 841 cgctccggcg actcaatcaa ctggatgatt cccttgagga catccgtctg cccagcaagg 901 tggaggtgct ggtgacgccc gccaatatgg aggccttcgg tcgggtgcag tctttggcac 961 agaatccacg cggcaggatc atcgttccgc tgcacaagaa gctgattagt ttgatcaaga 1021 cattcgagta caaatggcgc agtgccaatc agcgtttgca cgaggagaag agcgtcttct 1081 ttccggcgac ttcttccgca aacaacaaca atgaacctga gccggcagct tcatcgctcg 1141 atccctcgct gtgcttccag ccgcggccgg gagtggccat ccaccgaccc ctgctcagca 1201 tcaccgccta cctgagcagc atcaacatct gtttgaccgc ctacgaggag cgcttgggct 1261 tcaaggtgcg cagcgagtcg ctgggcagcc tgcccggcat cacggtggcg gccagcaagc 1321 gaccccgcac cgagagcggc tccgagaagc gttcgccgga gacgaagaag cccaaatcgg 1381 gtgccagtcc gccgctggag aagagcctgg atgaggtggg catggagggg aatctggtga 1441 agctggagaa tagcagcggc gatgagctgg gcgaggagat tcaggagttt ctcggtgacg 1501 tagagcaggg agctccaatt cagcccacct ctgagatatc ccttgttgtc ccggaaactt 1561 ccaatgatcc tctggctcct ccagcggcca ctgagccacc agctactcct gctccttcca 1621 cttccgtagc ctcgcagccg gcagctcgct ccaagcgcaa ggaagccaaa gaggcggccg 1681 ccgcggcgca ggctcgaaac tttaagcccc tgctcagcga cgagatcctc aagcgaatcc 1741 gcaagggctg gacggaggcg aatgcggcgg acataaccat tggcgatctg tatgtggtct 1801 ttggccagga ctccaagctg gagctcgagt attattggtg tgagctggag agttcgacgg 1861 ccattttggc cagctcctcg tcggtggcca cccaaacggg aacctcctcc tccgccgtca 1921 gccaaataac cgcatcttcc tcctcctcct cctcggtaaa cacggctagc tcctcgctgc 1981 cgtacaatcc caacgactgt gatagcgtgg aacgcgtcaa ggccgtcacc acatcgtcgg 2041 tgagcaacag gctgaagcac ctgctgctgg tggccaatct cagcgagcgc gtgcgcaagc 2101 ggcagtgcaa ctgcggccac acatgcgacc gcaagcggga tctgatgagc aaggcgcagc 2161 agctggcgga ggcggcggca gccggcggcg tgggcatggc ggagggcagc ttccgcacgc 2221 cgatgctgcc ggtgaggcgg ccgatagcca acatcatcga tcccgtgcgg cagctttcgg 2281 cgctcacgcg acagaagatc agtcgccagg tgctcgtgca gcgccgtctc ctgccccccg 2341 cctccatggg cgtgcgtccg tacgatctgt tgagtgtgcg ccaactgcac agcggcctct 2401 tcgagccgat cgatcgcctg ggcggcacca gttcctcggg gatcagctct gcgggttccg 2461 attccagcct gagtgcggcg ttgccggcgc agcagcagca gcagcaagcg gatcagcagt 2521 tcctcggcga tggcggcgat cagggcggcg cacgcgacat gcccaatctg gacttttgtg 2581 tggccaccac cggcagcagc ggcgtcagca gttccctggc cgaggcggtc caggatgaga 2641 gcacaacaca aaacttcttc catggcagcg ttagcccgat gcacttgctc agggactcga 2701 cttccaatgc tcgctggctg gaggagaata tcaatgattt ctcgctgacc tcgctgctgg 2761 ggcatctgga tgagattgat gccaccaggg atatactgga tccctcgtcg agcatgtcgg 2821 tgatcagcga gagcagcgtg gactttcggc acaagttcca ggagatcgcc gccctgctgc 2881 agcagcagga gaaggattag cagtggcaac tgcgggccac cggtcgtgtc tccttcgttt 2941 atttacacag atccggaccc tgagatcgtc gaagtctcat gtctcgtttt ctttttttta 3001 actcactgat attattcatc ccatatgtta tacgaattaa catctatgtt tttatgcgac 3061 tttttgtgat ctattctcat tttatgtatg ccaagtatta gcaagcactc acattgtcta 3121 aacatatata tatttattta tacattaact ctatgtaaca tgcgatcgaa cgcgataact 3181 ccccgtattt ttttaaacaa ctctcagccc ttctatgttt gtctactcgc tcgcacactc 3241 gttccgcact cctctaattg gttttttagc acgtaagatc ggttcagtat agttaagcct 3301 ctaacaaaga acaccaaacc caatcgaaac ttccatttgt atagagattc tctgcatgat 3361 aaattaaaac ccaacaaaat caaattcccg aaacgaagac tcgaacgttt taaaagtctc 3421 ccgccccttg ttaaccatat atatagtata tatataaagt acatcattta ggtgagaaca 3481 gaggaacaac atttaatcct agagcgtatt ttgtaacagt aacacttaaa acttgttatt 3541 ttacaaaggc gaataccgaa aataaaagca aactaaacta aaaacaa