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LOCUS XM_017153765 3207 bp mRNA linear INV 09-DEC-2024 mRNA. ACCESSION XM_017153765 VERSION XM_017153765.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153765.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3207 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3207 /gene="Rnp4F" /note="RNA-binding protein 4F; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins" /db_xref="GeneID:108065673" CDS 304..2931 /gene="Rnp4F" /codon_start=1 /product="RNA-binding protein 4F" /protein_id="XP_017009254.2" /db_xref="GeneID:108065673" /translation="MDGDKQLERQLEKELDEMPVQDLDDDTYDEYDLIVIPDQAKTAS PKREQKGEEEEPEEIEDDDDDEEEEEEPPKKQELRQNWPGSTGEDMTTIELISSDDEP SVEEGGAGGSSSSSDEVGVIEDSDSELSSDIDAPGGNQLERSYQDLMALPNKHFGQLV SISEIAFKLNDLEKIESSVLSLQKLATVPAHIWLKYLKARLVVTQTPDERKEFEEKCA KALGYYYNIPLSEFIVNYLVDQGNVQNHVLWAKLLADYDVERPDFGDKLRPLLATIED AKEAAAFEELLQKHCVSWKCSPEQRQLIKPIVDDFKRHLDEMKTQHSDWDWTKIHKSH VAEVQQLSLEDDLKNAIIRFIFERTVSKFPIADILWLSYIEFIQGGSSEELEEEENAE RASRLGKGFLCSTALDLARRGVRSRPSVRLNHRFLDLMERADFEQPEVDQQISTILQR IVPDMTMTVELHLDYLAYRVRNTNAGDKDQAASLRAAFIRVWDELSAHYGDEADTRYE VLQLWAQVEYTHLASPANGAHIWRQIMGYPGSSHRGLLWLGYAQMESEYNAGQGTRDI LREALTQPALEDGLMVQELYRRYERCYGTYESIAACQALELPAEYMKPRSRLKPNSQQ VFPRQQQQQQPLNREQRRRQAHEQQQQQQPPLVRKRPLGKAAPRTESPEVATKATRLT ETNPSAENRESNFKYSPHLEINKIFVRNLHPACSKEELHELFSPFGNIKDVRLVHKQN KQFKGIAYVEFELPGEAQRAVAGRDGQLLKGMNISVAISNPPPRGSADINKPSVAPKR RVPTSLIPTTLVRQEVAAKKRRLLQVPLDGSSTAEDSTEPEANGKSAIPVEEKEKEEE PVAAAPKSNDDFRKLFLKD" misc_feature 2407..2649 /gene="Rnp4F" /note="RNA recognition motif (RRM) superfamily; Region: RRM_SF; cl17169" /db_xref="CDD:473069" misc_feature 2878..2925 /gene="Rnp4F" /note="Lsm interaction motif; Region: Lsm_interact; pfam05391" /db_xref="CDD:398843" ORIGIN 1 tttcccacct ctaagcaacc cgaaactgaa aatgaatttg acttgaattt aattcgtttt 61 ttgaaagaaa agcctactgt cacggaaacc aaagctattt ggctacgcgg cgaaaagtgc 121 agtggtcgac aggagttgca agtggagagc tcaaaagtat cgaatagcgc gatatttgtt 181 tggccaaccc tgcagtgggg gtcttgtttt tctttctgtt tgttattcgc ccgtttttcc 241 agggaaaaga tcagtttaaa gaggaaattc gaagagtttt ccggctagca aagcacagag 301 atcatggacg gcgacaagca gctggaaagg cagctggaga aggagctgga cgagatgccg 361 gtgcaggatt tggatgacga tacctacgat gagtacgatc tgatagtgat tcccgaccag 421 gccaagaccg cctccccgaa aagggagcaa aagggagagg aggaggagcc agaggagatc 481 gaggacgacg acgacgatga ggaggaggag gaggagccgc caaagaagca ggaactgcgc 541 caaaactggc caggatcaac aggcgaggat atgaccacca ttgagctgat ctcctcggac 601 gacgagccct cggtggagga gggcggagcg gggggcagct cctccagcag cgatgaagtg 661 ggcgtgatcg aggactccga tagcgaattg tccagcgaca tcgatgctcc cggtggcaac 721 cagctggagc gatcctacca ggatctgatg gccctgccca acaagcattt cggccagctg 781 gtcagcatca gcgaaattgc cttcaaactc aacgacctgg agaagatcga gtcctcagtg 841 ctctccctgc aaaagctggc cactgtgccg gcccacattt ggctcaagta cttgaaggcc 901 cgcctggtgg tcacccagac gcccgacgaa cgcaaggagt tcgaggagaa gtgcgccaag 961 gcactgggct actactacaa cataccgctc tccgagttca ttgtgaacta cctggtggac 1021 cagggcaatg tgcagaacca tgtgctgtgg gccaaactgc tggccgacta cgacgtggag 1081 cgtccggact tcggcgacaa gctgcgcccg ctgctcgcga ccatcgagga cgccaaggag 1141 gccgccgcct tcgaggaact cctgcagaag cactgcgtca gctggaaatg cagcccagag 1201 cagcggcagc tcatcaaacc gattgtggac gactttaagc gacacctgga cgagatgaag 1261 acgcagcaca gcgactggga ctggacgaag atccacaaga gtcatgtggc cgaggtgcag 1321 cagctgtccc tggaggatga cctgaagaat gccatcattc gcttcatatt cgaacgcacc 1381 gtgtccaagt ttcccatagc cgacatcctg tggctctcct acatcgagtt tattcagggc 1441 gggagttccg aggagttgga ggaagaggag aatgccgaaa gggccagtcg cctgggcaaa 1501 ggcttcctct gcagcaccgc cctggatttg gccaggcgcg gcgtgcgcag tcgacccagc 1561 gtgcggctga atcaccgatt ccttgacctg atggagcggg cagacttcga gcagcccgag 1621 gtggatcagc agatcagcac catactgcag cgcattgtgc ccgacatgac gatgacggtg 1681 gagctgcacc tggactatct ggcctatcgc gtgcgcaaca cgaatgccgg ggacaaggat 1741 caggcggcca gcctgcgcgc cgccttcatt cgcgtctggg atgagctgtc cgcgcactac 1801 ggcgacgagg cggacacgcg ctacgaggtg ctgcagctgt gggcccaggt ggagtacacg 1861 cacctggcca gtccggccaa tggcgcgcac atctggcggc agataatggg ctatccaggc 1921 agctcgcatc gcgggttgct ttggctgggc tatgcccaaa tggaaagcga gtacaatgcc 1981 ggccagggca ccagggatat tctgcgcgag gctttaaccc agcccgctct ggaggatggc 2041 ctgatggtgc aggagctgta tcgacgctac gaacgctgct acggcaccta cgagtccata 2101 gccgcctgtc aggccctcga attgccagcg gaatacatga agccgcgttc ccgcttgaag 2161 ccgaactccc agcaggtgtt tcctcgccag cagcagcagc agcagccatt gaatcgcgag 2221 cagcgacgtc gtcaggcgca cgagcaacag cagcagcagc agcctccgct ggtaaggaag 2281 aggccactgg gcaaagcagc tcccagaact gaatcaccgg aagttgcaac gaaagctact 2341 aggctaactg aaacgaatcc ttcagcggag aaccgggaat ctaactttaa gtattcgccc 2401 catctggaga tcaacaagat ctttgtgagg aacctgcatc ccgcctgctc gaaggaggag 2461 ctgcacgagc tgttctcgcc ctttggcaac atcaaggatg tgcgcctggt gcacaagcaa 2521 aacaaacaat tcaagggcat tgcttacgtg gagtttgagc tgccgggaga agctcaaaga 2581 gcggtggctg gacgcgatgg tcaactgctg aaggggatga atatatccgt tgccatatca 2641 aacccaccgc cgaggggctc cgctgatatt aacaagccca gtgtggcgcc caagcgccgc 2701 gtgcccacct cgctgatacc cacgactttg gtgcgccagg aggtggccgc caagaagcgt 2761 cgcctgctgc aggtcccctt ggatggatcc tcgaccgccg aggactccac tgagccagag 2821 gctaatggca aatccgccat tcccgtggag gaaaaggaaa aggaggaaga accagtggct 2881 gctgcgccaa agtcaaacga tgacttccgc aagctatttc ttaaggatta ggtcataatc 2941 cctccggctg agccagcaat tagtttgtat tcaaggacga atattcggaa tttacattgt 3001 aagatttaag gccacacaaa gtgaagataa aaacacttgt acaaaatgaa acaaacacaa 3061 gacaatgatt tttggcgatt cattaattgg tttgaaaatg ttaaccaagt aaaagaagag 3121 ataaatgtat gaatataagc aagttttata aatgttagcc ctgatgattt aaaaaaacgt 3181 accagaaacc gaaataaaat gtacaaa