Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017153698 3552 bp mRNA linear INV 09-DEC-2024 transcript variant X2, mRNA. ACCESSION XM_017153698 VERSION XM_017153698.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153698.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3552 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3552 /gene="Snx27" /note="sorting nexin 27; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108065635" CDS 32..1363 /gene="Snx27" /codon_start=1 /product="sorting nexin-27 isoform X2" /protein_id="XP_017009187.1" /db_xref="GeneID:108065635" /translation="MLPFHSVQFAQLTALEKRCLRNGVSVEGATHKQVVDLIKSGGDC LTLTVISVTQQEADRLEPQEDQSGYSYIDYSDKRSLPISIPDYGIVNRNGERYIVFNI HMAGRQLCSRRYREFANLHSLLRKEFSGFNFPKLPGKWPFQLSEQQLDTRRRGLEQYL EKVCAVRVIAESDAVQDFLTDTEDDISASPVDIKVMLPDHEVSTVSVKKSSNAQVVWE ILVQRANLTAYTQQYFYLFEIVEYNFERKLQPHEIPHQLYVQNYSTASSTCLCVRRWL FSVAKELTLPDGEQAGRFVFYQAVDEVNRGNIRADGRLYELKALQDAKKAGDYLALAR TLPGYGDVVFPHCSCDSRKEGHVVPAVGMKSFRLHACREDGSLEAQMVELTWDSITRS ESDEESMSFCFQYNRPDKPARWVKVYTPYHAFLADCFDRIMEERKWDDSGD" misc_feature <95..184 /gene="Snx27" /note="canonical PDZ domain; Region: PDZ_canonical; cl49608" /db_xref="CDD:483948" misc_feature 260..577 /gene="Snx27" /note="The phosphoinositide binding Phox Homology domain of Sorting Nexin 27; Region: PX_SNX27; cd06886" /db_xref="CDD:132796" misc_feature order(368..376,443..448,485..487) /gene="Snx27" /note="phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:132796" misc_feature 596..871 /gene="Snx27" /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in sorting nexin protein 27 (SNX27); Region: FERM_F1_SNX27; cd01777" /db_xref="CDD:340475" misc_feature 1049..1345 /gene="Snx27" /note="Atypical FERM-like domain C-lobe of Sorting nexin 27; Region: FERM-like_C_SNX27; cd13338" /db_xref="CDD:270146" polyA_site 3552 /gene="Snx27" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 attccattct tggtttttaa ttcccggcaa aatgttgcct tttcattccg ttcagtttgc 61 ccagttgaca gctttggaga aacgctgtct tcgaaatggc gtcagcgtgg agggagccac 121 acacaaacag gtcgtggatc tgatcaaatc cggcggtgac tgcctaaccc tgacggtgat 181 atcggtgaca cagcaggagg ccgatcgact ggagccgcag gaggatcaga gcggctactc 241 ctacattgat tactcggaca aacgctcgct gcccattagc atacccgact atgggatcgt 301 gaaccggaat ggcgagcggt acatcgtctt caatatacac atggccggca ggcagctgtg 361 ctcgcgtcgc tatcgggagt tcgccaacct gcactcgctg ctgcgcaagg agttctccgg 421 cttcaacttc cccaagctgc ccggcaaatg gcccttccag ctgagcgaac agcagctgga 481 cacgcggcgc cgcggtctgg agcaatatct ggagaaggtg tgcgcggtgc gggtgattgc 541 cgaaagcgat gctgtgcagg atttcctcac cgacaccgag gacgatatat ccgcctcgcc 601 ggtggacatc aaggtgatgc tgcccgatca cgaggtgagc accgtgtcgg tgaagaagtc 661 ctccaatgcc caggtggtgt gggagattct ggtgcagcgc gccaatctca ccgcctacac 721 gcagcagtat ttctacctgt tcgaaatagt cgagtacaac ttcgagcgga agctgcagcc 781 gcacgagatt ccgcatcagt tgtacgtgca gaactacagt accgcctcgt ccacctgcct 841 gtgcgtccgc cgctggctct tctcggtggc caaggagctg acgctgccgg acggcgaaca 901 ggctggccgg tttgtcttct atcaggcggt cgacgaggtg aatcgcggca acatccgggc 961 cgatggccgc ctgtacgagc tgaaggcgct gcaggacgcc aagaaggccg gcgactatct 1021 ggctttggcc cgcacactgc caggatacgg ggacgttgtc ttcccccact gctcctgtga 1081 tagtcgcaag gagggacacg tggtgcccgc cgtgggcatg aagagctttc ggctgcacgc 1141 ctgccgtgag gatggctcgc tggaggcgca aatggtcgag ctgacctggg atagcatcac 1201 gcgctccgag agcgacgagg agtccatgtc attctgcttt cagtacaatc gtccagataa 1261 gccagcgcgt tgggttaaag tctacacgcc atatcatgca ttccttgcgg actgctttga 1321 tcgcatcatg gaggagcgaa aatgggacga cagcggcgac tagggaaggc gaaaggcgct 1381 gcagagggag aaggaggagc agagggagcc agtggagcag gagaaggagc agcaaaggcg 1441 gcgtcgacgg caggaagcac agataaaaca acccagtacc ataccgaaca tcaccaggcg 1501 ggccgaggca ttgcacattg ttcgttagtg ggtcggcggg tgaaccattc gttgacctct 1561 ccgcttctaa acccacacca catccacacc tccttcggtt agcttgccat aatccggcag 1621 ctcagttcga gggctccgga atctgtggac tcagattcgt gctcttgccc actgctgcac 1681 ccaaagtcta aagcctcacc catatatatt gtaaagtata tttggcactg atatatatat 1741 attacattta tataatttgt acattgacaa gcaattgcaa tcgccttggc tctcggcgct 1801 ccaatttggg atgcggatgg gatggagttg gagttggaaa atgttaacag cagcaacaaa 1861 aatgtttcaa atgttttcgg cacttagcac atagagcaaa aacacaggca ccaatttaga 1921 tcaagcagaa ccgacgattc tcattataca atatatatat atatatataa aattataaat 1981 atatatatat atacacataa ctcacagaca cgcatacatt ataaagaaaa aggaaaaaat 2041 atatagaaga atatatttaa gccaacctca gcgtaatatt taattcataa ttctccaaat 2101 accctttgtt ccgtttttgt ttgtatattt tgctcatagg aaaaaggcag cggctaaaag 2161 gaaaaatcta tgaagagtaa attgtaaaaa gtcaatttta attatacaca aatatacata 2221 catcatatat atatacatat acataaatgt ttagcaaaca catcgagaag cattgatcat 2281 ttatttattt gtatgtacgt actacgtagg aaggcctaga aacaaactca actgaacgca 2341 accgaaatca gaatcagaaa gtcagccaag agtgaacgaa atagaaaagc gggttggcaa 2401 caagcaaatg caaatgctaa acgaaacaat ataaacttaa cagataacta aaaactaaag 2461 cgatgaaatg ttgaaaatat tgtactcatt cgaaaacgaa aaacagaaaa ctttctatag 2521 aaattgttag ttaaatttaa ggtaacgtta atagttattg aacaaatgcg aaaacgagac 2581 tcaaaactca gcaaaactca aaaccgaact caaaaattaa cctagacaga gacggcaggc 2641 gggcaaaaga aagagagaga gatagagcga cataacacaa atagcaaaaa tggcggtgga 2701 aaaccgagct ttctttcacg tcgaaaaacc cacaaaaatc acaaaaaaac cacaaacatt 2761 ttcacacgaa ttaaggcaga acataattac acacccgcat acttatagaa tggcatatag 2821 gcatacattt atcaacgatg caagtgacgt ctgcttgtga tatttacaat ttacacaatt 2881 attacaatta attttattac gattatatta tttaatggat tccatatctc tttcgtatct 2941 gtattggatt tgttaatctc tcaatgtgcg tagtctacgt aatgtattta ttatgtttag 3001 ttatatagtt ctacgataat gtgaatttaa aattatgttt actcttattt agcctttttt 3061 tttgtttgtc tctttttggc catttacatg tagcaagcgc ttactttaga tttgtgtgta 3121 ttccatataa taattaataa tactatacaa ctaactccgc tctgtcgtta tttatttatt 3181 gattattgtt tccgtttctg tgtcacgtga ctgttgagca aaacgaaaaa agatgttggg 3241 cgtctcgggg accgcgatga cagctagaag cgaagtatat cgaaaaaata tatacgctaa 3301 caaaaagata cattcccaaa aataaatacg aaaataatta tcgatgtttt cttacacatt 3361 taatacggca accaaaacgc ggcaacaaat aagcaaaacg acaaattaaa aatacaaata 3421 aaaataaaag cgtataagaa ctggaaaatt catcaaatgt ttaagtgtac aactaaacta 3481 aatgaacaaa tttaacaaat ttattgaaaa caaaaataat aaaaacaaat tgcatttttc 3541 cccttttcaa aa