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LOCUS XM_017153696 4297 bp mRNA linear INV 09-DEC-2024 transcript variant X1, mRNA. ACCESSION XM_017153696 VERSION XM_017153696.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153696.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..4297 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..4297 /gene="Snx27" /note="sorting nexin 27; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein" /db_xref="GeneID:108065635" CDS 522..2108 /gene="Snx27" /codon_start=1 /product="sorting nexin-27 isoform X1" /protein_id="XP_017009185.1" /db_xref="GeneID:108065635" /translation="MSIVGENHPLPPPTPASTVVVSASSAGGGVMGVGVGVTTANGPR VVTIYKTETGFGFNVRGQVSEGGQLRSINGELYAPLQHVSAVLENGAAEKAGIKKGDR ILEVNGVSVEGATHKQVVDLIKSGGDCLTLTVISVTQQEADRLEPQEDQSGYSYIDYS DKRSLPISIPDYGIVNRNGERYIVFNIHMAGRQLCSRRYREFANLHSLLRKEFSGFNF PKLPGKWPFQLSEQQLDTRRRGLEQYLEKVCAVRVIAESDAVQDFLTDTEDDISASPV DIKVMLPDHEVSTVSVKKSSNAQVVWEILVQRANLTAYTQQYFYLFEIVEYNFERKLQ PHEIPHQLYVQNYSTASSTCLCVRRWLFSVAKELTLPDGEQAGRFVFYQAVDEVNRGN IRADGRLYELKALQDAKKAGDYLALARTLPGYGDVVFPHCSCDSRKEGHVVPAVGMKS FRLHACREDGSLEAQMVELTWDSITRSESDEESMSFCFQYNRPDKPARWVKVYTPYHA FLADCFDRIMEERKWDDSGD" misc_feature 651..929 /gene="Snx27" /note="PDZ domain of sorting nexin-27 (SNX27), and related domains; Region: PDZ_SNX27-like; cd23070" /db_xref="CDD:467283" misc_feature order(681..701,771..773,780..782,867..869,879..881, 888..893) /gene="Snx27" /note="peptide binding site [polypeptide binding]; other site" /db_xref="CDD:467283" misc_feature 1005..1322 /gene="Snx27" /note="The phosphoinositide binding Phox Homology domain of Sorting Nexin 27; Region: PX_SNX27; cd06886" /db_xref="CDD:132796" misc_feature order(1113..1121,1188..1193,1230..1232) /gene="Snx27" /note="phosphoinositide binding site [chemical binding]; other site" /db_xref="CDD:132796" misc_feature 1341..1616 /gene="Snx27" /note="FERM (Four.1 protein, Ezrin, Radixin, Moesin) domain, F1 sub-domain, found in sorting nexin protein 27 (SNX27); Region: FERM_F1_SNX27; cd01777" /db_xref="CDD:340475" misc_feature 1794..2090 /gene="Snx27" /note="Atypical FERM-like domain C-lobe of Sorting nexin 27; Region: FERM-like_C_SNX27; cd13338" /db_xref="CDD:270146" polyA_site 4297 /gene="Snx27" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgatgtacct ttgcaccact aactaaacta aaaccaaaag caaaaacggc tagaagcgaa 61 tgcgaagcta gcaacaaaat gcgcagcgcg aaacgtgtta aataaagtaa aaacacacaa 121 aattacatat ttttttcggt gtgtgcgtgc gtgtgtgtgc ggtgaggtga ggcagcgaag 181 ccgaggagag cgcaagagga agaggagttt cggtggagcg gaggtggagc caagaggagg 241 ggaggaagta aaagtaaaag tggagtggcg gtctctatac gcgtgtgtgt gtgtgtctcg 301 tgtgtgctgg tgtgtgccga aaagaagttg cagaaaacat tacgcaaaat agagaaaaat 361 aaccgcaaca caacaaaaga tattgtgcaa acaacaaaga cgaaggtggc gaaggagagg 421 ggcgagggag taggtgacgg agaaggagaa gcagaagcag cagcagaaga gtgaagaacc 481 agtgcgagtg cgagtgcgag cgagaaagaa cgaccggcgc aatgagcatc gttggcgaga 541 accaccccct cccaccccca acccccgcca gcacagtggt ggtgtccgca tcatcggcag 601 gagggggcgt catgggcgta ggcgtaggcg taaccacagc aaacggaccc cgtgtcgtca 661 ccatttacaa aacggaaacg ggattcggat tcaatgtgcg cggtcaagtt tccgaggggg 721 gtcagctgcg ctcgatcaac ggcgagctgt acgcccccct tcagcacgtg agcgccgtcc 781 ttgaaaatgg agcagccgag aaggcgggca tcaaaaaggg cgatcgcatt ctggaggtaa 841 atggcgtcag cgtggaggga gccacacaca aacaggtcgt ggatctgatc aaatccggcg 901 gtgactgcct aaccctgacg gtgatatcgg tgacacagca ggaggccgat cgactggagc 961 cgcaggagga tcagagcggc tactcctaca ttgattactc ggacaaacgc tcgctgccca 1021 ttagcatacc cgactatggg atcgtgaacc ggaatggcga gcggtacatc gtcttcaata 1081 tacacatggc cggcaggcag ctgtgctcgc gtcgctatcg ggagttcgcc aacctgcact 1141 cgctgctgcg caaggagttc tccggcttca acttccccaa gctgcccggc aaatggccct 1201 tccagctgag cgaacagcag ctggacacgc ggcgccgcgg tctggagcaa tatctggaga 1261 aggtgtgcgc ggtgcgggtg attgccgaaa gcgatgctgt gcaggatttc ctcaccgaca 1321 ccgaggacga tatatccgcc tcgccggtgg acatcaaggt gatgctgccc gatcacgagg 1381 tgagcaccgt gtcggtgaag aagtcctcca atgcccaggt ggtgtgggag attctggtgc 1441 agcgcgccaa tctcaccgcc tacacgcagc agtatttcta cctgttcgaa atagtcgagt 1501 acaacttcga gcggaagctg cagccgcacg agattccgca tcagttgtac gtgcagaact 1561 acagtaccgc ctcgtccacc tgcctgtgcg tccgccgctg gctcttctcg gtggccaagg 1621 agctgacgct gccggacggc gaacaggctg gccggtttgt cttctatcag gcggtcgacg 1681 aggtgaatcg cggcaacatc cgggccgatg gccgcctgta cgagctgaag gcgctgcagg 1741 acgccaagaa ggccggcgac tatctggctt tggcccgcac actgccagga tacggggacg 1801 ttgtcttccc ccactgctcc tgtgatagtc gcaaggaggg acacgtggtg cccgccgtgg 1861 gcatgaagag ctttcggctg cacgcctgcc gtgaggatgg ctcgctggag gcgcaaatgg 1921 tcgagctgac ctgggatagc atcacgcgct ccgagagcga cgaggagtcc atgtcattct 1981 gctttcagta caatcgtcca gataagccag cgcgttgggt taaagtctac acgccatatc 2041 atgcattcct tgcggactgc tttgatcgca tcatggagga gcgaaaatgg gacgacagcg 2101 gcgactaggg aaggcgaaag gcgctgcaga gggagaagga ggagcagagg gagccagtgg 2161 agcaggagaa ggagcagcaa aggcggcgtc gacggcagga agcacagata aaacaaccca 2221 gtaccatacc gaacatcacc aggcgggccg aggcattgca cattgttcgt tagtgggtcg 2281 gcgggtgaac cattcgttga cctctccgct tctaaaccca caccacatcc acacctcctt 2341 cggttagctt gccataatcc ggcagctcag ttcgagggct ccggaatctg tggactcaga 2401 ttcgtgctct tgcccactgc tgcacccaaa gtctaaagcc tcacccatat atattgtaaa 2461 gtatatttgg cactgatata tatatattac atttatataa tttgtacatt gacaagcaat 2521 tgcaatcgcc ttggctctcg gcgctccaat ttgggatgcg gatgggatgg agttggagtt 2581 ggaaaatgtt aacagcagca acaaaaatgt ttcaaatgtt ttcggcactt agcacataga 2641 gcaaaaacac aggcaccaat ttagatcaag cagaaccgac gattctcatt atacaatata 2701 tatatatata tataaaatta taaatatata tatatataca cataactcac agacacgcat 2761 acattataaa gaaaaaggaa aaaatatata gaagaatata tttaagccaa cctcagcgta 2821 atatttaatt cataattctc caaataccct ttgttccgtt tttgtttgta tattttgctc 2881 ataggaaaaa ggcagcggct aaaaggaaaa atctatgaag agtaaattgt aaaaagtcaa 2941 ttttaattat acacaaatat acatacatca tatatatata catatacata aatgtttagc 3001 aaacacatcg agaagcattg atcatttatt tatttgtatg tacgtactac gtaggaaggc 3061 ctagaaacaa actcaactga acgcaaccga aatcagaatc agaaagtcag ccaagagtga 3121 acgaaataga aaagcgggtt ggcaacaagc aaatgcaaat gctaaacgaa acaatataaa 3181 cttaacagat aactaaaaac taaagcgatg aaatgttgaa aatattgtac tcattcgaaa 3241 acgaaaaaca gaaaactttc tatagaaatt gttagttaaa tttaaggtaa cgttaatagt 3301 tattgaacaa atgcgaaaac gagactcaaa actcagcaaa actcaaaacc gaactcaaaa 3361 attaacctag acagagacgg caggcgggca aaagaaagag agagagatag agcgacataa 3421 cacaaatagc aaaaatggcg gtggaaaacc gagctttctt tcacgtcgaa aaacccacaa 3481 aaatcacaaa aaaaccacaa acattttcac acgaattaag gcagaacata attacacacc 3541 cgcatactta tagaatggca tataggcata catttatcaa cgatgcaagt gacgtctgct 3601 tgtgatattt acaatttaca caattattac aattaatttt attacgatta tattatttaa 3661 tggattccat atctctttcg tatctgtatt ggatttgtta atctctcaat gtgcgtagtc 3721 tacgtaatgt atttattatg tttagttata tagttctacg ataatgtgaa tttaaaatta 3781 tgtttactct tatttagcct ttttttttgt ttgtctcttt ttggccattt acatgtagca 3841 agcgcttact ttagatttgt gtgtattcca tataataatt aataatacta tacaactaac 3901 tccgctctgt cgttatttat ttattgatta ttgtttccgt ttctgtgtca cgtgactgtt 3961 gagcaaaacg aaaaaagatg ttgggcgtct cggggaccgc gatgacagct agaagcgaag 4021 tatatcgaaa aaatatatac gctaacaaaa agatacattc ccaaaaataa atacgaaaat 4081 aattatcgat gttttcttac acatttaata cggcaaccaa aacgcggcaa caaataagca 4141 aaacgacaaa ttaaaaatac aaataaaaat aaaagcgtat aagaactgga aaattcatca 4201 aatgtttaag tgtacaacta aactaaatga acaaatttaa caaatttatt gaaaacaaaa 4261 ataataaaaa caaattgcat ttttcccctt ttcaaaa