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LOCUS XM_017153695 3517 bp mRNA linear INV 09-DEC-2024 variant X2, mRNA. ACCESSION XM_017153695 VERSION XM_017153695.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153695.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..3517 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..3517 /gene="bbx" /note="bobby sox; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins" /db_xref="GeneID:108065633" CDS 210..2690 /gene="bbx" /codon_start=1 /product="myb-like protein AA" /protein_id="XP_017009184.2" /db_xref="GeneID:108065633" /translation="MINGLSVGGGQQVAQVTPTGAAIKLHFAYNNSSNTSNINSSSNS NKNNNIYSGLKTVEQKMSNSNKKSGEVLKIIEKIRETSGGATGGRQGSGINYTGYATA RGLSPGEPRIISSAPQGSGSGSGSGSFLDYQVVATGSATSITPFFGVSLAAGSLRAVY KVAEAGKISGNAGNGGISSLGATGLRWLPMPMPGIKESKPSNAGGAAPGSPPGEAAKS ALVNPQPQRTEDQENAFRRIEDVHNYAKLQDYSSDTEAEDEEEEEEEEEELDEEEEDE EEQEIRVQLPVQQEITRIRREAAEEHVDVDVVTVPQDQEQDRRHVQEHQHQQQQEQLH QDPQQPADSIRPEHHARRPMNAFLIFCKRHRGIVKERYKTLENRAITKILGDWWAALD EQEKHCFTDLAQQNKDAFFNANPNFKWYKLPAPPLRTLATRPSNAATGLPLPNEDQPA SQPPTALQMQWAERGELMPRALLRRDYFKLADETQMGELSSLLQVQVQEKDYALQQVL SETSQFLSAHMPGGGGNPPNGNLNVNKRSLPSSNSSNSSEEEAVTGGSPSKKAKSSRS CKGKIYQELVNSGQLAAVAKKSKARSPPAGNLMISGGNFVDIPLDAGPNTPPVSPPER QNRSPDSRQKHLRSVSESSNGGFFDLEEKIKELPALSLDAYLQRKRSTKKKKKFSGSK KQRNSNSTGSVASNASAAAAVVAASTTSEQLVRIKQQQQAVGSQRRKARKESITRRDV SAIEQEVASILPLTINGSYYFNQSNAPAKAVTSVTSSSASPPLSSNSSSSSSSLSSPA AFDVTSSTSDLLILAEVAANRTEFTKSN" misc_feature 1260..1466 /gene="bbx" /note="high mobility group (HMG)-box found in HMG box-containing protein 2 (HBP2) and similar proteins; Region: HMG-box_HBP2; cd21989" /db_xref="CDD:438805" misc_feature order(1260..1265,1269..1283,1290..1295,1314..1316, 1350..1355,1362..1364,1371..1376,1395..1397,1407..1409, 1416..1418,1428..1430,1437..1439) /gene="bbx" /note="putative DNA binding site [nucleotide binding]; other site" /db_xref="CDD:438805" polyA_site 3517 /gene="bbx" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 gcagcaggcc gagggcaaga agaagatgcg catgtttgcc aatattcgcg taccgcacga 61 gaccttcatc aatgtgctca agcggtagga tcgatcccga ccagaatatc ccgtctcgaa 121 actatttgtg atcaatttgg cgtaatatgc tcgaggatcg ggactagaaa gataggtgga 181 aagggaaaag gaaaacgaaa gctgggaaca tgatcaacgg cctgagcgtt ggcggtggtc 241 agcaggtggc gcaggtgacg ccaacaggtg ctgcaattaa attgcacttt gcctacaaca 301 acagcagcaa cacaagcaac attaacagta gcagcaacag caacaaaaac aacaacatct 361 acagtggcct taaaacagtg gagcaaaaaa tgagcaacag caacaaaaag tcgggcgaag 421 tgctgaaaat aatcgagaag atccgggaaa caagtggagg agcaacaggt ggccgccaag 481 gatcagggat caactatacg ggatatgcaa cagccagggg actttcacct ggcgaaccca 541 ggataatttc aagcgccccc caaggatcag gatccggatc aggatcagga agttttctgg 601 actaccaagt ggtggccact ggatcagcta ctagtattac tccctttttt ggagtttccc 661 tggctgccgg atccttgaga gcagtttaca aggtagccga agcaggaaaa atatcaggaa 721 acgcaggaaa tggaggtatt tcctccttgg gagcaactgg actccgctgg ctgcccatgc 781 ccatgcccgg aatcaaggaa tccaagcctt cgaatgcagg aggagcagca cctggatcgc 841 cacctggtga agcggccaaa agtgccttag tcaatccaca gccgcagcgc acagaggacc 901 aagaaaatgc ctttcgacgc atcgaggatg tgcacaacta tgccaagctg caggactaca 961 gcagcgacac cgaggcggag gacgaggagg aggaagagga ggaggaggag gagctcgacg 1021 aagaggagga ggacgaggag gagcaggaga tccgggtgca actgccggtg cagcaggaga 1081 taactcgcat tcgtcgcgag gccgccgaag agcatgtgga cgtggatgtg gtcacagtgc 1141 cgcaggatca ggaacaggat cgtcgtcatg tacaggagca tcagcatcag caacagcagg 1201 agcagcttca tcaggatcca cagcagccgg cggacagcat ccgaccggag caccatgccc 1261 gccgccccat gaacgcgttc ctcatcttct gcaagcgaca ccgcggcatt gtcaaggagc 1321 gctacaagac tttggagaac cgtgccatca ccaagatact gggcgactgg tgggccgccc 1381 ttgacgaaca ggaaaagcat tgcttcacgg atttggcgca gcagaacaag gacgccttct 1441 tcaatgccaa tcccaacttc aagtggtaca agctgcccgc tccgccgctg cgaacgctgg 1501 ccacgcgtcc cagcaatgcg gctaccggtc tacctttacc caacgaggat cagccagcca 1561 gtcagccgcc gactgccctc caaatgcagt gggccgagcg aggcgagttg atgccgcgtg 1621 ccctgctgcg ccgcgactac tttaagctgg cggacgaaac gcaaatgggc gaactgagct 1681 cgctgttgca agtccaagtg caggagaagg actacgccct gcagcaggtg ctcagcgaga 1741 ccagtcagtt tctatccgcc cacatgccag gcggcggcgg caatcctccg aatggcaact 1801 tgaacgtcaa taaacgctcg ttgccctcga gcaactcgag caattccagc gaggaggagg 1861 ccgtcactgg tggctcgccc agcaagaagg ccaagtcatc gcgctcctgc aagggcaaga 1921 tctaccagga gctagtcaac tcgggccaac tggcggccgt agccaagaag agcaaggctc 1981 gctcaccgcc ggcaggaaat ctaatgatca gcggtggcaa ctttgtggac atacccctag 2041 atgcgggtcc caatacgccg cccgtttcgc caccggaacg ccagaacaga agtccggact 2101 ccaggcagaa gcatctgcgc agcgtctccg agtccagcaa cggtggtttc ttcgatctcg 2161 aggagaagat caaggagctg ccggccctca gcttggatgc ctacttgcag cgcaagcgta 2221 gcaccaaaaa gaagaagaag ttcagcggca gcaagaagca aaggaattca aatagcaccg 2281 gatcagtggc ctctaatgca tcagcagcag cagctgttgt ggcagcctcg acaaccagcg 2341 agcagctggt gaggatcaag cagcagcaac aggcggtggg cagccagcgg cgcaaggcgc 2401 gcaaggagag catcacgcgg cgcgatgtca gcgccatcga gcaggaggtg gcctccattc 2461 tgccgctgac catcaacggc agctactact tcaatcagag caatgcgccc gcgaaggcgg 2521 tgacctctgt gacctcgtcg tcggcctcgc cgccgctgtc ctcgaactcc tcgtcgtcat 2581 cctcgtcgct ctcctcgccg gcggccttcg atgtgacctc ctctacctca gatctactca 2641 ttctggccga agtggccgcc aaccgcactg aattcaccaa gtccaactag cgccagcagc 2701 agcagcagca gcaccaccga caccaccagc accactggcc gaccagcatt accaaaaacg 2761 atttacgtaa cttctccttt tcgattctgt tgaattatcc aaaatattct cttttttttt 2821 tgaaaccttg gaagtaggaa agtgcatgct aagcatatca acttttatag cagggaagac 2881 gaaaacttct ttatattccg tttgagaact gtaaactatt taattaggtt ttaaaatgtt 2941 acacacatat tcagaatatt tcgtttcctt aacccccccg taaagtgcat tattatataa 3001 ttaaaaaaag aaaaagaagg aatattctcc ttggaaagta gaatgtcaat tgcaaacctt 3061 gatagtctga gagtggggtt aggcgccctt cttcgatact tacaatgctt taagctattt 3121 gctggtggtg ccgcatggag atagaaaaca gacattcgtt gatctacaat ttagtcaata 3181 atattatgta aaaacaaaaa aggaggtaat tcgagaagag agtcgcggcg gtagcgaatt 3241 atgtattgtt tgttatgatg gcggccggag aaaatccgcg tcagtttcac acgcatatat 3301 ccatatattt ggtatttaga taacttgttc tgtttttttt cttgttaagt ttctcctttt 3361 atcgggccgc gttcgcataa gcagcaaaaa caacaacatc cgaacgctca ttaatgttaa 3421 ttattattat ttctaatatg tagtcgtaat ttattgctat atttgtcaaa acgcaaacaa 3481 tttgcaaaca aaaatatatt catttaaaag tggaaaa