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LOCUS XM_017153674 5370 bp mRNA linear INV 09-DEC-2024 MTOR complex 1 (raptor), mRNA. ACCESSION XM_017153674 VERSION XM_017153674.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153674.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..5370 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..5370 /gene="raptor" /note="regulatory associated protein of MTOR complex 1; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108065622" CDS 479..5239 /gene="raptor" /codon_start=1 /product="regulatory-associated protein of mTOR" /protein_id="XP_017009163.2" /db_xref="GeneID:108065622" /translation="MASAVRAKSASASASAAVAVGVAVDESNGSSAAAEQEVSSTLRS LIRKRHEKYISAKWDDPLLPIIDKLEQIERCQSEEQVATGVSLEDSLQSLRSLVRNIK PEDHSLLLIVKHIEQISDILSSSDEQVASLGCLRDLNQTIRREWPPDDSSIHRLMKQI QSIQAQPPAENICFGERLRDDRCPLSLQTKRHIERIQAMLYERQPWRIRERMKTASVA LVLCLNIGVDPPDVVKIQPCSRLECWIDPSSVSPPKAMELIGSNLQMQYERWQPRARY KKCHDPTVEDVKKLCTSLRRNAKGERILFHYNGHGVPKPTANGEIWVFNKTFTQYIPL SIFELITWMSAPSIYVYDCSNAGIIINSFQPYAEQHEHELEKALAAAQQRGSGAPSGA ANQVVQQLVSYKNCIHLAACAANEILPMNAQLPADLFTSCLTTPINIALKWYAMQEKL GMVPRIQSELIDKIPGKVNDRRTMMGELNWIFTAITDTIAWNSLPRELFQRLFRQDLL VASLFRNFLLAERILRSHDCTPVSLPALPPCYRHPMWKAWDLVVDLALQQLPEILDHN APYRQLPFFEHQLTAFQVWLDSESESRTPPEQLPIVLQVLLSQVHRLRALELLARFLD LGPWAVNLALGVGIFPYVLKLLQSSTRELRPVLVFIWAKILAVDPSCQVDLVKEYKYF LSVLQDTSVSKEHRTLSAFVLSSIVHNFLLGQTSALQGPLLSICLEQLNDGSWLLRQW LAICLGMLWQNFEKARWSGARDLAHEKLYVLLRDEIPEVRAAAVFALGTFISSVTDRS EEQANNIDRIIAITMLETVGEDMSPLVRMELAAALQWMVLLFESQFVAVYLAEHMRGH ASAAAAAASFVMCGDPRDLSSSTHSLERHVTMRRGASSSSISNMGSTAASSGNALGRS KSGSGSSGGRGAAGSIPFQSIFTKLWLGICNLAQDPFPRVAAIAQEIVDHVRDTALCP IMAAKEATMATATEKCSSLSVSLPPSPNTRVNYLSGGAGGTGGAGESPPVGATASGAS HWAQKLRLSGSGGGGVAAGDPQTILQRKLRTSSINDETDSGGPAAYQRGAAGLGLPSG GGGGGPRESTHSARSSGSESNQYLEPGHSLTPIVLTEFIPWAISYFTRPGKERYSSAE GAAEEGRQRYPVDRNSAELRRRRLRFLRNDFVRRHARRQQQEQSDRFGYDVCVWNRKT QFTPSIVKLLPYEPQIAVAYREKVLVYDFQYNSVRTYGAEATNSSSGYGSSSSLNGST PRKSGGAEKPPPFARVSSIEFINAQDMALNLVAHEDGVVRVWQSSPMVSSSTSSEDAP SKARLVTAWNALGQVNQQGYRQRNISSSGGSIGKGAADTSLGSSSNGNIVTAWQQCSQ HLLIAGGGCRFVRIWDVERELKLADIPLGRSETCARVLAPYLPNMRSDVILAGCDDGS VRLFDKRCSPQEARISVYRRHSAPILHACLRANETVLVSGCTEGRISVADIRASQFPS SVSDVVHEWDAGGDVTAIASHQIADTVACGNASKIGIYSLDGRVQKVLRTNEGFIGPK IGHPTWLSFHAYKVQLAVGFVDNMVAIYSPTPVL" misc_feature 1112..1567 /gene="raptor" /note="Raptor N-terminal CASPase like domain; Region: Raptor_N; pfam14538" /db_xref="CDD:464202" misc_feature 2273..2341 /gene="raptor" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature order(2315..2320,2327..2329,2336..2341,2459..2464, 2471..2473,2480..2485,2567..2572,2579..2581,2588..2593, 2600..2602,2693..2698,2705..2707,2714..2719,2819..2824, 2831..2833,2840..2845) /gene="raptor" /note="putative peptide binding site [polypeptide binding]; other site" /db_xref="CDD:293787" misc_feature 2375..2491 /gene="raptor" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 2519..2611 /gene="raptor" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 2639..2719 /gene="raptor" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature <2657..2977 /gene="raptor" /note="HEAT repeat [General function prediction only]; Region: HEAT; COG1413" /db_xref="CDD:441023" misc_feature 2759..2848 /gene="raptor" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 2903..2983 /gene="raptor" /note="HEAT repeat [structural motif]; Region: HEAT repeat" /db_xref="CDD:293787" misc_feature 4607..>5224 /gene="raptor" /note="WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from...; Region: WD40; cl29593" /db_xref="CDD:475233" misc_feature 4712..4843 /gene="raptor" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" misc_feature 4964..5083 /gene="raptor" /note="WD40 repeat [structural motif]; Region: WD40 repeat" /db_xref="CDD:293791" ORIGIN 1 gccagctcta aaaaaaatgg tccacagggt gttttctgct ttctgcgcaa ttctttttcg 61 tgtaattcga ttaaacataa ataaataaag cccgctgcga gtatataagc ccttggatgc 121 gcaccatccg ccgctcgaga tcggcggtga agttagcagg gttttcgatt cggcccaaac 181 gcgagttaat cggccaggcg gcgtgttttc cccgagttct ttttaaccgt attcgggaaa 241 tgggccgcga tccgtaggcg gaaaacgtgg agaagaggaa cggaacggaa cgcgcggaga 301 ggagtggaga ggggaggagg agctgggaag tgcgaaaagt gtttggggtt atgtgctaga 361 gtccccgcgg ggggattttc agctgtgcgg atccgcgaca gagacgtaat cgttccggga 421 aatcgcctgc acaaagaaga ggaagaaggg agacagagaa gaaaacacgc aaaacaacat 481 ggcaagtgcc gttcgcgcta agtctgcctc tgcctccgcc tctgccgcag ttgcagtcgg 541 cgtcgcagtc gacgaaagca acggaagcag cgctgccgcg gagcaggagg tgtcctccac 601 tttgcgctcc ctcatccgca agcggcacga aaagtacatc tccgccaagt gggatgaccc 661 gctgctcccg ataatcgata aactggagca gattgaacgc tgccaatcgg aggagcaggt 721 ggccactggc gtttctttgg aggattccct gcaatccctg cgttccctgg tgaggaacat 781 caagcccgag gaccactcgc tcctgctgat cgtcaagcac attgagcaaa tctccgacat 841 cctctcctcc tccgacgagc aggtggcctc cctgggctgc ctgagggatc tcaaccagac 901 gatccggcgg gagtggcccc cggatgactc ctccatccac cgtctgatga agcagatcca 961 gagcatacag gctcaaccgc cggcggagaa catttgcttt ggagagcgtc tccgggacga 1021 tagatgtcca ctctccctgc agaccaagcg gcacatagag cgcatccagg cgatgctgta 1081 cgagcggcag ccctggcgca tccgcgagcg catgaagacg gccagcgtgg ctttggtttt 1141 gtgcctcaac attggggttg atccaccgga tgtggtaaag atccaaccgt gctcgcgcct 1201 ggagtgctgg atagatccca gttcggtgtc gccgcccaag gcaatggagc taattgggag 1261 caacctgcag atgcagtacg agcgctggca accgagggcc aggtacaaga agtgccacga 1321 tcccaccgtc gaggatgtga agaagctctg cacttcgctg aggagaaacg ccaagggcga 1381 gcgcatcctg ttccactaca atggtcacgg ggtgcccaaa ccgacggcca atggcgagat 1441 ctgggtgttc aacaagacct tcacgcagta cataccgctg agcatctttg agctgatcac 1501 ctggatgtcg gcgccctcga tctacgtgta cgattgctcg aatgccggga tcatcattaa 1561 ctcctttcaa ccctacgccg agcagcatga gcacgagctg gagaaggcgc tggccgccgc 1621 ccagcagagg ggcagcgggg caccgagtgg cgccgccaat caggtggtgc agcagctggt 1681 cagctacaag aattgcatac acctcgccgc ctgtgcggcc aacgagattc tgcccatgaa 1741 cgcccagctg ccggcggatc tgttcaccag ctgcctgacc acgcccatta acattgcgct 1801 caagtggtac gccatgcagg agaagctggg catggtgccg cgcatccaga gcgagctgat 1861 cgacaagata ccaggcaaag taaacgatcg gcgcacgatg atgggcgagc tcaactggat 1921 tttcaccgcc atcacggaca cgatagcctg gaattcgctg ccgcgcgagc ttttccagcg 1981 tctcttccgc caggatctgc tggtggccag cttgtttcgc aatttcctgc tggccgagcg 2041 catcctgcgc agccacgatt gcactccagt ttcgctgccc gccttgccgc cctgctatcg 2101 ccatcccatg tggaaagcct gggatctggt ggtcgatctg gccctgcagc agctgcccga 2161 gattctggat cacaatgctc cgtatcgcca gctgccgttt ttcgagcacc agctaaccgc 2221 ctttcaggtt tggctggaca gcgaatcgga gtcgcgtacg ccgcccgagc agctgcccat 2281 tgtgctgcag gtgctcctct cgcaggttca tcgtttgagg gccctcgagc tgctcgcccg 2341 cttcctggat ctcggtccct gggccgttaa tctcgccctg ggcgtgggca tcttccccta 2401 tgtgctcaaa ctgctgcaga gttcaacgcg cgaactgcgc cccgttttgg tcttcatttg 2461 ggccaagata ctggccgtgg atcccagttg ccaggtggat ctggtcaagg agtacaagta 2521 cttcctctcc gtgctgcagg atacctctgt atccaaggaa catcgcacac tgtccgcctt 2581 tgtgctctcc tccattgttc acaactttct gctcggccag acgagtgctt tgcaaggacc 2641 actgctctcg atttgcctgg agcagctgaa cgacggcagc tggctgctcc gccagtggct 2701 ggccatctgt ttgggcatgc tgtggcagaa cttcgagaag gcgcgctggt cgggagcccg 2761 cgatttggcg cacgagaagc tgtatgtcct gctgcgcgat gagattccgg aagtgcgtgc 2821 agccgccgtc ttcgctttgg gcactttcat tagctccgtg acggatcgca gcgaggagca 2881 ggcgaataat attgatcgca tcatagccat caccatgctg gagaccgtgg gcgaggatat 2941 gtcgccgctg gtgcgcatgg aactggccgc cgctttgcaa tggatggtcc tgctcttcga 3001 gtcgcaattc gtggccgtct atctggcgga gcatatgcgt ggtcacgcct ccgccgccgc 3061 cgccgccgct tcgtttgtga tgtgcgggga cccgcgggat ctaagctcct ccacgcacag 3121 cctggagcgg catgtgacga tgcgtcgggg agccagttcc agttcgatat ccaacatggg 3181 atcgacagct gcttcatcgg gcaatgcgct aggtcgctcg aaaagcggct ctggaagttc 3241 gggcggccga ggagcagctg gaagcatacc cttccagtcg atattcacca aactctggct 3301 gggcatctgc aatctggccc aggatccctt tccccgcgtt gccgccattg cccaggagat 3361 tgtggatcat gtgagggaca cggccctctg ccccataatg gccgccaagg aggccacgat 3421 ggccacggcc acagaaaagt gcagcagttt gagcgtcagc ctgccaccga gtccgaatac 3481 gagggttaat tacctgagtg gaggagcggg aggaacggga ggagctggag aatccccgcc 3541 agtaggagca actgcctcgg gggccagcca ttgggcacag aagctgcgtc tctccggcag 3601 cggaggcggc ggcgtggctg ccggcgatcc gcagaccatc ctccagcgca aactgcgcac 3661 cagttcgatc aacgatgaga ctgacagcgg cggaccggcg gcctaccaac gcggagcagc 3721 tggcttgggc ctgcccagcg gcggaggagg cggcggaccc agggagagca cacattcggc 3781 gcggagcagc ggcagcgaga gcaatcagta cttggagccc ggtcacagtt tgacgcccat 3841 tgtgctcacc gagtttatac cctgggccat ttcctatttc acgcgaccgg gcaaggagcg 3901 ctacagcagc gccgagggag cagcggagga gggacgccag cggtatccag tggatcgcaa 3961 ttccgcagag ctgcgacgcc ggagattgcg tttcctacgc aacgattttg tgcgacgtca 4021 tgcgcggcgg cagcagcagg agcagagcga tcgtttcggc tacgatgttt gcgtttggaa 4081 caggaagacg cagtttacac cctccattgt gaagctgctg ccgtacgagc cgcagattgc 4141 agtggcctac cgggagaagg ttttggtcta cgattttcag tacaattcag tgcgcaccta 4201 tggcgcagag gccactaact cgagttccgg ctatggatca tcctcgtcgc tcaatggcag 4261 cacgccaagg aaatcgggag gagcggaaaa gccgcctccg tttgcccgcg tcagcagcat 4321 cgagttcatc aatgcccagg atatggcatt gaatctggtg gcccacgagg atggagtagt 4381 gcgcgtctgg caatcatcgc caatggttag cagctcgacc tcctccgagg atgcgccgag 4441 caaggcgcgc ttggtcaccg cctggaatgc tttgggtcag gtgaatcagc agggctaccg 4501 gcagcgcaac atctcctcct ccggcggcag cattggcaaa ggagcagcgg acacatcatt 4561 gggttcctcc agcaatggca acattgtgac cgcctggcag cagtgcagcc aacacctttt 4621 gatagccggc ggcggctgtc gcttcgtgcg catctgggat gtggagaggg agctcaaact 4681 ggccgatatt ccattgggac gcagcgaaac ctgcgcccgg gtgctggcac cctacctgcc 4741 caacatgcga tccgatgtga tactcgccgg ctgcgatgac ggcagtgtgc ggttgtttga 4801 caagcgatgt tcgccgcagg aagcgaggat ttccgtgtat cggcggcata gtgctcccat 4861 tttgcatgcc tgcctaaggg ccaacgaaac ggtgctcgtt tcgggctgca ctgaaggtcg 4921 gattagcgtc gcggacataa gggccagtca gttcccgagc agcgtcagcg atgtggtgca 4981 cgaatgggat gccggcgggg atgtgacagc tatcgcaagt caccaaattg cagacaccgt 5041 ggcctgcggg aatgcctcga agattgggat ctactcgctg gacggacggg tacagaaggt 5101 gctgcggacg aacgagggct tcatcgggcc caagatcgga catcccacct ggctgtcgtt 5161 tcacgcgtac aaggtgcagc tggcggtggg cttcgtggac aatatggtgg ccatctacag 5221 ccccacccca gttctataag ggctgtggaa agtggaaaac tgacgtcgat aagaatcccg 5281 aaaccttggt caacgcacgc aggttccttg cggagccgca gatgcaatca gcagtggagc 5341 aggtgcggag cagcacccgg ctgcccgatc