Unfortunately due to lack of commercial feasibility, the SkyBLAST service has been suspended from December 1st, 2025.
All subscriptions for paid accounts have been paused. For further information or enquiries, please email [email protected]
LOCUS XM_017153666 2644 bp mRNA linear INV 09-DEC-2024 helicase DDX56 (Ddx56), mRNA. ACCESSION XM_017153666 VERSION XM_017153666.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153666.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..2644 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..2644 /gene="Ddx56" /note="putative ATP-dependent RNA helicase DDX56; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins" /db_xref="GeneID:108065620" CDS 93..1778 /gene="Ddx56" /codon_start=1 /product="probable ATP-dependent RNA helicase DDX56" /protein_id="XP_017009155.2" /db_xref="GeneID:108065620" /translation="MSQKTQKTAQFHELELDQRILKAVAQLGWQQPTLIQSTAIPLLL EGKDVVVRARTGSGKTATYALPLIQKILNSKLNASEQCVSAVILAPTKELCRQSRKVI EQLVESCGKVVRVADIAGSSSDAVTQRHALAERPDIVVATPAKLLAHAEAGGVVDLKH VETLVVDEADLVFAFGYEKDFKRLIKHLPPIYQAVLVSATLTDDVVRMKGLCLNNPVT LKLEEPELVPQDQLTHQRILAEENDKPAILYALLKLRLIRGKSIIFVNSIDRCYKVRL FLEQFGIRACVLNSELPANIRIHTISQFNKGTYDIIIASDEHHLEQPGGKSTASRKSS RSGDMESSASRGIDFQCVNNVINFDFPRDVTSYIHRAGRTARGNNKGSVLSFVSMKEA KVNDAVEKKLCDSFAAQEGEQIIKNYQFKMEEVESFRYRAQDCWRAATRVAVHDTRIR EIKTEILNCEKLKGFFEENKRDLQALRHDKPLRAIKVQSHLSDMPEYIVPKALKRVVG SSSASSAGASEAKQPRQSAAKAAFERQSNDPLMVSQVDFGKRRPAPRRKKKAL" misc_feature 138..755 /gene="Ddx56" /note="DEAD-box helicase domain of DEAD box protein 56; Region: DEADc_DDX56; cd17961" /db_xref="CDD:350719" misc_feature order(174..179,183..191,198..200,252..275) /gene="Ddx56" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350719" misc_feature 786..1253 /gene="Ddx56" /note="C-terminal helicase domain of the DEAD box helicases; Region: SF2_C_DEAD; cd18787" /db_xref="CDD:350174" misc_feature order(1128..1130,1134..1136,1209..1211,1218..1223) /gene="Ddx56" /note="ATP binding site [chemical binding]; other site" /db_xref="CDD:350174" polyA_site 2644 /gene="Ddx56" /experiment="COORDINATES: polyA evidence [ECO:0006239]" ORIGIN 1 cgatagaccg ctagtgccgc ccgacacacc acccgctctt tttgttgttg cgcccaaaaa 61 cgtgtgctgc gcatttccca gggtttccca ccatgagcca gaaaacccag aaaacggcgc 121 agttccacga gctggagctg gaccagcgca tcctgaaggc ggtggcccag ttgggttggc 181 agcagcccac gctcatccag tcgacggcga ttccgctgct cctggagggc aaggatgtgg 241 tggtgcgtgc acgcacggga tctgggaaga cggccaccta cgccctgccc ctgatccaga 301 agatcctcaa ctccaaactg aatgccagcg agcagtgcgt gagtgctgtg atcctggcgc 361 ccaccaagga gctgtgccgc cagtcgcgca aggtgatcga gcagctggtc gagtcctgcg 421 gcaaggtggt ccgcgtggcg gacatagccg gcagctccag cgatgcggtg acccagcggc 481 acgccctggc cgagaggccc gacatcgtgg tggccacgcc ggccaagctg ctggcccacg 541 ccgaggccgg cggcgtggtc gatctgaagc atgtggagac cttggtggtg gacgaagcgg 601 atctggtgtt tgcctttggc tacgagaagg atttcaagcg cctgatcaag cacctgccgc 661 ccatctacca ggctgttctg gtctccgcca cccttaccga cgatgtggtc cggatgaagg 721 gcctgtgcct caacaacccg gtgacgctga agctggagga gccggaactg gtgccgcagg 781 accagctgac gcaccagcgc atcctggccg aggagaacga caagccggcc attctgtatg 841 ccttgcttaa gctgaggctc atacgcggca agagcatcat ctttgtgaac agcatcgacc 901 gctgctacaa ggttcgcttg ttcctcgagc aattcggcat ccgagcctgc gtcttgaact 961 ccgagctgcc ggccaacatt cgcatccaca caatcagcca gttcaacaag ggcacctacg 1021 acatcatcat cgcctccgac gaacatcatc tggagcagcc gggcggcaag tcgacggcca 1081 gccgcaaatc ctcgcgctcc ggcgacatgg agtcgagtgc ctcgcgcggc attgatttcc 1141 agtgcgtgaa caatgtgatc aactttgatt tcccccgcga tgttacgtct tatatccatc 1201 gggctggccg aacggccaga gggaacaaca agggctccgt tctgtcgttt gtgagcatga 1261 aggaggccaa ggtgaacgat gccgtggaga agaagctgtg cgacagcttt gcagcccagg 1321 agggcgaaca gatcatcaag aactaccagt tcaaaatgga ggaggtggag tccttccgtt 1381 accgcgccca ggattgctgg cgcgccgcca cgcgtgtcgc cgtccacgat actcgcatac 1441 gggagatcaa gacggagatt ctgaactgcg agaagctcaa gggcttcttc gaggagaaca 1501 agcgcgatct gcaggcgctg cggcacgaca agccgctgcg cgccatcaag gtgcagagtc 1561 atctgtccga catgcccgag tacattgtgc ccaaggccct gaagcgagta gttggctcgt 1621 ccagtgcctc ttccgccggc gcttcggagg ccaagcagcc gcgccagtcg gccgcaaagg 1681 cagccttcga gcgacagagc aacgatccgc tgatggtcag ccaggtggac ttcgggaaga 1741 ggcgccctgc cccgcggcgg aaaaagaagg cgttgtaggg gagcaaatgc cgttttaggg 1801 gaggtagcct gttatccata gtcgctttta gtgtgtaagc aaaaacttat tttgtgcgta 1861 tgatttaagg aaaacataaa aacagcttta tacaagatgt gaaccgttta tatttgaaga 1921 tttgtgatca tctcagtagc aaaatcgcaa taagtaaacg ttatttgctc aacaaattga 1981 aattttaaac cctactgttt gtgtgacggc cgttgggtaa ctacacagaa aaacaagaga 2041 gaacgctata gtcgggtgcc ccgactatca gatacccgtt actcagctaa agggagtgcg 2101 aaggagataa aaaactttga tccgccgtaa ctttttaacg aatggtccga tttaaaaaat 2161 ttcttcgaca tttcgatatg tattcataaa cataataaaa ctgcattttt acttttccga 2221 aatattgaaa tttttaaaat cgtatataag cgattgtggg cgttagttgg ctcgtccagt 2281 gcctcttccg ccggcgcttc ggaggccaag cagccgcgcc agtcggccgc aaaggcagcc 2341 ttcgagcgac agagcaacga tccgctgatg gtcagccagg tggacttcgg gaagaggcgc 2401 cctgccccgc ggcggaaaaa gaaggcgttg taggggagca aatgccgttt taggggaggt 2461 agcctgttat ccatagtcgc ttttagtgtg taagcaaaaa cttattttgt gcgtatgatt 2521 taaggaaaac ataaaaacag ctttatacaa gatgtgaacc gtttatattt gaagatttgt 2581 gatcatctca gtagcaaaat cgcaataagt aaacgttatt tgctcaacaa attgaaattt 2641 taaa