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PREDICTED: Drosophila takahashii stoned A (stnA), transcript


LOCUS       XM_017153653            3026 bp    mRNA    linear   INV 09-DEC-2024
            variant X1, mRNA.
ACCESSION   XM_017153653
VERSION     XM_017153653.3
DBLINK      BioProject: PRJNA1194641
KEYWORDS    RefSeq.
SOURCE      Drosophila takahashii
  ORGANISM  Drosophila takahashii
            Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta;
            Pterygota; Neoptera; Endopterygota; Diptera; Brachycera;
            Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora.
COMMENT     MODEL REFSEQ:  This record is predicted by automated computational
            analysis. This record is derived from a genomic sequence
            (NC_091683) annotated using gene prediction method: Gnomon.
            Also see:
                Documentation of NCBI's Annotation Process
            
            On Dec 9, 2024 this sequence version replaced XM_017153653.2.
            
            ##Genome-Annotation-Data-START##
            Annotation Provider         :: NCBI RefSeq
            Annotation Status           :: Full annotation
            Annotation Name             :: GCF_030179915.1-RS_2024_12
            Annotation Pipeline         :: NCBI eukaryotic genome annotation
                                           pipeline
            Annotation Software Version :: 10.3
            Annotation Method           :: Gnomon; cmsearch; tRNAscan-SE
            Features Annotated          :: Gene; mRNA; CDS; ncRNA
            Annotation Date             :: 12/07/2024
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3026
                     /organism="Drosophila takahashii"
                     /mol_type="mRNA"
                     /strain="IR98-3 E-12201"
                     /db_xref="taxon:29030"
                     /chromosome="X"
                     /sex="female"
                     /tissue_type="Whole fly"
                     /dev_stage="Adult fly"
                     /collected_by="Originally obtained from EHIME-Fly"
     gene            1..3026
                     /gene="stnA"
                     /note="stoned A; Derived by automated computational
                     analysis using gene prediction method: Gnomon. Supporting
                     evidence includes similarity to: 3 Proteins"
                     /db_xref="GeneID:108065617"
     CDS             447..3026
                     /gene="stnA"
                     /codon_start=1
                     /product="protein stoned-A"
                     /protein_id="XP_017009142.2"
                     /db_xref="GeneID:108065617"
                     /translation="MLKLPKGLKKKKKKSKKDQELFTEEELEQYKRDLRAKQEAAATK
                     SDAGESDGAASDVEAHHEPVASNSGLVSGSGSGSGYHAPGSSSSNSHQQPGDQSQGAA
                     GGDEEWAKFKALTSGVDSILHKTQDELDRIKKESFYQRLPSAAEKKKQEEEEAARLEA
                     EREERERQRLGQIEAQRDKLAEAVVQLSESEEEAGDYEADDIFATDYIEAITSGELQL
                     AVVPDSPVLADDGPDPFDTAYAEKVIVGADRAKGNKKLVSLGAAVEVLSGRVDREHAV
                     ALANPKRKLRKGIQNLLLSESVELADPEADLLAAAANAEPQHNLLDDLDEELPESSAP
                     IDLSVSLHLHLIKPKPVEEEEEQEQQDLGNQLLNPDLFEFDALKDEEDDEFAELAAES
                     LTKKEEVTVVSKVALPVEELPTEAFGEGSWAEFEAQPEQETGKPKRPPPPVRPPTGPH
                     IVPGAIYVSDDEEENPDDDPFNTNYAEQVIKKTTVLEEDDDFDPRAEEEPATGSASLA
                     APTRDLLAGSATDLSQVVPAPLAPTLSVDQDPEDFDPFDTSAISALVQPKATELRFLE
                     RELLNQSSAGGVTIKHSLSDPDFDPRADQETPAEPQVKVEQIQTDFDTARRKSSLSLN
                     IQAKTVGFLVPAADLLGAGNELGANKKPLTPYYAPTGNPLQEREREAEDVDPFDTSYV
                     PEAKLSDIELKHIEKDLISEPSNLRHSLSDPDFDPRAPPTPVPAEVLLAVEENIDIKV
                     LTPAQERKKLTNSVGAADSEEDIDPFDTSIAANLRPGQTELKLLENELLPETRTSVTD
                     VLDVQSDAQELGFGDKVLTPSTHSRPALPAHNLDPFDTSIAENLVPGETEIKLLESEL
                     IER"
ORIGIN      
        1 ttacgacatt ttattcattc tgtgctagat ttcccgatag ttcaaatcag aggtaaagcc
       61 ccggaaggga atcgaaacaa aaatacctga aattcgctat aactaacaca acgctgcagt
      121 ttttaatgtt ggctctttgc taattttaat atatttccaa aagtattggg tccaaaaaga
      181 aggggtgaaa tactaatgcc cagtgaaatt gtgttttttt ttcgtacgaa tcaagttttt
      241 tattgagata aaagtgtgta caagtgtgag acttccaaga ccccatccaa ctagaaccaa
      301 actaaatcct acgtagccgc cgtaaccacg taaccacgtt accacgtcca ccaccttcat
      361 ctccagctcg attttgtttt cgacccggag tcagtaagtt tcacgaccta tttgcagacc
      421 gatctcgatg tctccgcaat tagataatgc ttaagctacc aaagggccta aaaaagaaaa
      481 agaagaagtc gaaaaaggac caggagctct tcaccgagga agagctcgag cagtacaagc
      541 gcgacctaag ggccaaacag gaggcggcgg ccaccaaatc ggacgccggt gaatccgacg
      601 gagcggcctc agacgttgaa gcccaccacg agccagtagc cagcaactcg ggattggtat
      661 cgggatcggg atcgggatcc ggctatcacg caccaggatc atcctctagt aactcccacc
      721 aacagccggg agatcaaagt cagggagctg ccggcggcga cgaggagtgg gccaagttca
      781 aggcactcac ctccggcgtc gatagcatcc tacacaagac ccaggacgag ctcgatcgga
      841 tcaagaagga gtccttctac cagcgcctgc cctcggccgc cgagaagaag aaacaagagg
      901 aggaggaggc cgcccgcctt gaagccgagc gagaggagcg ggagaggcag cgtctggggc
      961 agatcgaggc tcagcgggac aagctagccg aagcggttgt ccagctatcc gaatcggagg
     1021 aggaggccgg cgactatgag gccgatgaca tcttcgctac cgattacatt gaggccatca
     1081 ccagcggaga gctccaacta gccgttgtcc cggattcccc ggttctcgcc gacgacggac
     1141 ccgatccctt tgacaccgcc tacgcagaga aggttattgt tggcgccgat cgggcaaagg
     1201 gaaacaagaa gctagtgagt ctcggggctg ccgttgaggt gctatctggt cgcgtggacc
     1261 gcgagcacgc cgttgcatta gcgaatccca agcgtaaatt gcggaagggc atccagaatc
     1321 tcctgctcag cgagagcgta gagctagccg atccggaggc ggatcttctg gccgccgcgg
     1381 ccaacgccga gccgcagcat aatctactcg acgatctcga cgaggaactg cccgagtcct
     1441 cggcccccat agatctcagt gtttcgttgc atttgcacct aataaaaccc aagcccgtcg
     1501 aggaggagga ggagcaggag cagcaggatc tgggaaatca gctgctcaac ccggatctat
     1561 tcgagttcga tgccctcaag gacgaggagg acgacgagtt tgctgaacta gccgccgagt
     1621 cactgacgaa aaaggaggag gtcactgtcg tcagcaaggt tgctctgccc gtcgaggaac
     1681 tgccaactga agcgtttgga gaaggcagct gggctgaatt tgaagctcag ccggaacaag
     1741 aaacaggaaa gcccaagcgt ccgccaccac cagtccgtcc gcctacagga ccccacatcg
     1801 tgcccggtgc aatttacgtt tcagacgacg aggaggaaaa tcctgacgac gatcctttta
     1861 acacaaacta cgccgaacag gtgatcaaga agaccaccgt actcgaggaa gacgacgact
     1921 tcgacccacg tgccgaggag gaaccggcca ctgggtcagc ctctctagcg gctccaaccc
     1981 gcgatcttct tgctggcagt gctaccgatc tcagccaggt ggttcccgcg cccttggcac
     2041 ctactttaag tgtcgaccag gatccagagg acttcgatcc cttcgacacc tcagccatat
     2101 cggctttggt gcagcccaag gccacggaac tacgcttttt ggagcgcgag ctgcttaacc
     2161 agtccagcgc aggaggagtc actatcaagc actccctgag cgatccggac tttgatccac
     2221 gagcggatca ggaaacgcca gcggagccgc aagtgaaagt agaacaaata cagacggatt
     2281 tcgacaccgc ccggcgaaag tcctccttga gtctgaacat acaggccaag actgtgggct
     2341 ttctggtgcc ggcagcggat ctgctcggag cgggtaatga gttgggggcg aataagaagc
     2401 cattaacgcc atactacgca ccaactggca atcctttgca ggagcgagag cgcgaagccg
     2461 aagacgttga tcccttcgac acgtcatacg tgcccgaggc gaagcttagc gatatagagc
     2521 tgaagcatat agaaaaggac ctgatttctg aaccttccaa tctgcggcac agcctctccg
     2581 accccgattt cgatcctcgg gctccaccca ctccggttcc cgccgaagtc ttgttggccg
     2641 tcgaggagaa tatcgacatc aaggtcttga cacccgccca ggagcgtaag aagctaacca
     2701 attccgtcgg agcagccgat tcggaggagg acattgatcc ctttgacacc tccatagcgg
     2761 cgaatctccg accgggtcag acggaactga agcttttgga aaacgaactt ctgccggaga
     2821 caaggacgtc ggtaaccgac gtcctagacg ttcagagcga cgctcaggag ttgggttttg
     2881 gcgataaggt actcacaccc tcgacgcact cgagacctgc ccttcccgct cacaatcttg
     2941 atccgtttga cacttccatt gcggagaatc ttgtgcccgg cgagacagag atcaaactgc
     3001 tcgaaagcga actgattgag cgctaa