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LOCUS XM_017153649 7930 bp mRNA linear INV 09-DEC-2024 dorado (Dora), transcript variant X1, mRNA. ACCESSION XM_017153649 VERSION XM_017153649.3 DBLINK BioProject: PRJNA1194641 KEYWORDS RefSeq. SOURCE Drosophila takahashii ORGANISM Drosophila takahashii Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Diptera; Brachycera; Muscomorpha; Ephydroidea; Drosophilidae; Drosophila; Sophophora. COMMENT MODEL REFSEQ: This record is predicted by automated computational analysis. This record is derived from a genomic sequence (NC_091683) annotated using gene prediction method: Gnomon. Also see: Documentation of NCBI's Annotation Process On Dec 9, 2024 this sequence version replaced XM_017153649.2. ##Genome-Annotation-Data-START## Annotation Provider :: NCBI RefSeq Annotation Status :: Full annotation Annotation Name :: GCF_030179915.1-RS_2024_12 Annotation Pipeline :: NCBI eukaryotic genome annotation pipeline Annotation Software Version :: 10.3 Annotation Method :: Gnomon; cmsearch; tRNAscan-SE Features Annotated :: Gene; mRNA; CDS; ncRNA Annotation Date :: 12/07/2024 ##Genome-Annotation-Data-END## FEATURES Location/Qualifiers source 1..7930 /organism="Drosophila takahashii" /mol_type="mRNA" /strain="IR98-3 E-12201" /db_xref="taxon:29030" /chromosome="X" /sex="female" /tissue_type="Whole fly" /dev_stage="Adult fly" /collected_by="Originally obtained from EHIME-Fly" gene 1..7930 /gene="Dora" /note="zinc finger SWIM domain-containing dorado; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins" /db_xref="GeneID:108065615" CDS 1526..7795 /gene="Dora" /codon_start=1 /product="zinc finger SWIM domain-containing protein 8 homolog isoform X1" /protein_id="XP_017009138.2" /db_xref="GeneID:108065615" /translation="MDRFSSDDSIRFEEDSLCSWSSEPESLCNNWRGWKKPAAGSGAG SGGLSGMGSGMAIAFGAGASASCTPGGSGAAMASTSTCGRYYEVSTLAELAARCVASY IPFELVEHVYPPVPEQLQLRIAFWSFPDNEEDIRLYSCLANSSADEFNRGDSLFRVRA VKDPLQIGFHLSASVSQTPRAYFNVAVTFDRRRISSCNCTCTSSAYWCSHVVAVCLHR IHCPQEVCLRAPVSESLTRLQRDQLQKFAQYLISELPQQILPTAQRLLDELLSAQPTA INTVCGAPDPTAGASINDQTSWYLDEKTLHNNIKRILIKFCLPAPIVFSDVNYLTNSA PPAAAEWSSLLRPLRGREPEGMWNLLSIVREMYRRCDRNAVRLLEIITEECLYCDQIL IWWFQTKLALMMGSHGHSGGKHSNTHSNSTALQHACSSLCDEIVALWRLAALNPGLAP DERDMLHAQFTAWHLKILDRVVKSRMMPSSYTNKHQQNSRSETELFIGFKPAIEACYL DWEGYPIPGVTHTHDTNPIYYSPFTCFKHTDLKGESSNPGQLNATQALMTNNKHYNYF SASSDHAGMHAGAFKQRLDRPFRESRFYANPSDLDGGSAALPGGGGNGRFSTGNLGAV VGGAGGGGSVAGGVTGGGGGGVNNSVGAATVEANTVQLQQQQQQLVSGSSGVGGSAAN AKAAGGAADGNRSSASSEGFCENDDFGGDTSSSHNYCPPGGGQAVVPGQKSALTESDS QSSFDAVSQQSKDEPPVGVPVGVEQVLSTSDTSSASSASSSASTASGSSNSSTSSMLM AGQEAAVGGAVQQAPRRLSKDESFSSSSDEFNQAGGSAAGGVAAGESAQGGAVATAGG DLTPVPSTSAAARAALAASCSAVPVTTPLQATSSVGASVEQPSTSSASVHAARTLAAA VAASSDKPHVFSNVRPTEDAWDILLARAEGLHAHGHGGEACILAVRLAEQMLANPPNL LLELPPAPKRKGKKQNVNPISHQLTVVASATLSKCAFLCTVLSENSEHYHIGFRICLF ALEMPRPPASTKPLEVKLANQEADILALLKRLPLGSAELQVIRERAEQLRSGTFKTRG EALLPINLATFIFDALVTLSPASGSAIGPGVASSSSSSGAGSAAGKSMVNPGSRLMLY KHNSDESLGFDAAVAALGLKANVSEAEHPLLCEGTRRQRGDLALTLLSHYKDEPRKIA KIMEKLLDREIHTLLNAPLLPAYYSSNPPVRTPSNQPTRREEHDYGGSGSGGCASSNC NPVANLCELLPADYGSVGGNSRPHSSTSAELELSMCALSMASSQSGGGGGGGGGGGGG GQGMVPTPNAAGNTGTPSSSSTTVSGGQNPNGNPSGSGGGNGGNGGGGSSSSSRSKES RYKGKRAYPSIPNQPSEASAHFMFELAKNVLTKAGGNSSTSLFTQASTSQNHHGPHRA LHMCAFQLGLYALGLHNCVSPNWLSRTYSSHVSWILGQAMEIGAPAISFLIDTWEAHL TPPEAAGMADRASRGWDSNMVYPAAELALSVLPHAAALNPNEIQRAILQCKEQSDLML ERACLTVETAAKGGGVYPEVLFQVARYWYELYMRNTPNNSEHEPHEDTMDHSAVSLSA LIESQQQHELQQQQQQQAVQQQQAVQQQQQQQQQVVQQQQQVVQQQQLGMPNPGVPGG PGGLPVAVPPPVVGSVPNPQAQFQPVGVASLAPLGLAPYPPYSFCQGLYAHHHNLSYP PGQMQMYISAGPPPPPQGYGGYQQAPPQQPPNQQQQQQVVQQQQQQVVQQQQVQMAGQ APPGHPGQQVHPGQPPSGFQQPPPPGAFQTLPPQAYQAMQAGPPGPPMGPPQGYYGPP PPPPPNGGPPGVGVNVGVMPMRQHQHQHPVYPFMQQAPPQPQQQQQPPPSQPPVRQRQ PHQFTPTQLRYLLAAYNVGMLAMETLARRVHDDRPQAKYARNPPYGEDVKWLLRISKK LGTQYLHQFCICAVNSIVSPFVLHDVAIESAHYLGRNNHQLVMQHLRSALTPLVQKCQ QMYIQCIHQKLYHLTQGDYEEFASIVVAARAAFQITPEGSAQFKDWLQSIKRSKSCKK ELWTQINAALQSNSK" misc_feature 1916..>2329 /gene="Dora" /note="Uncharacterized protein, contains SWIM-type Zn finger domain [Function unknown]; Region: SWIM; COG4715" /db_xref="CDD:443750" ORIGIN 1 gttttcatcg gtgtttctcc acctccgacg accgactgct ttgcgtcgct cgtttcacct 61 acgaaagtaa aaacaaagcc gtgcaaaagt gtccgaaaac cgtgcgtagc ttcagacaat 121 tcgtaactcg gccagccaac tcgagaggcg ccgttttggg ccgttcccgt tgtcggtact 181 cgcggaatcc agcggaaatt aaggactttt gaaaaacgtt cgccccaaac gcatttcgtt 241 cgttcactca cacacacaca cacgcacagt cgcagacaaa cacatcgcgc agcgcatata 301 cacaaagaaa agaaggcagt gaaaatcgac aagcgcacgc atgcacacac agaggcgaaa 361 aagtgttgat atatatccaa tatattgata tatatttata tgtatattga tgttgtgtgc 421 accgttgttg ttactgctac tgccgtgtga gtgagagtgg gacagagtga gtggcagcag 481 tgtgggcgag ggagggagcg cgcaggataa agcgaagatg agccacaaag caaaggagtg 541 aaaaaataat taacggcgaa gagagtggaa agaacagagc gcactgaaga ggagcaggag 601 cagcagcaaa actaacaaca tcaacaacaa cgactaggag acccccttca actacaacta 661 caaattggtc ctctcatttt ggcagtcgtg caagccccat ctcgctctct ctttcggtgg 721 gggatacgaa aaagttcaca tgcaacaaca acgacaacaa acaatagcag tcgcagtcga 781 cgcgggcaga ggcagaggca gcgacagaga ccgcggcgca ctgaacgtat tttgtacata 841 taaacaaaaa tagtttttaa actcccaaat ctaaatctaa atctaaagtt aaaactaaag 901 ccctaagcat aaatctacag taaataagtt aattaaaagc aagcaaatca agcatagaga 961 aacgcgaggt agagaaaggg gaggagagag acaaagagag agatagagag agagaggaga 1021 acgctcaaaa gaaattcgcc ttttacacga ttttaaattg agcgtttggt ttggcagaga 1081 tccattatac atacatccat ccaaaaaaaa aaaacgaaaa aaatagcggg agagagagag 1141 gagcagggcc gagcggagcg gagcaacaac aaacaatcgg ggagcgggag cgggagcggg 1201 agcgggagca gctgaaaaag gagcaactgt aaacacacac aatctcagcc tcacgctggc 1261 gaatcgcaac ggcagcaaca acaacagagg aggaggcggt gacgctggag gcggggcagc 1321 tgtgcccgcc gcttcccgca acaacaacaa caaccacaac aacaacggag gcggcaacaa 1381 caacaatgga ggcggaggag cggctgcagt cggcgctggc gccgaaggag caggcggcgg 1441 aggaggagcg ggcagagatg gtgctgcagc gggaggggga gcgggagcgg gaggagcagc 1501 agccaacgaa tggaacccag aggaaatgga ccgcttcagc tccgacgact ccatccgctt 1561 cgaggaggac tcgctgtgca gctggagctc cgaaccggag tcgctgtgca acaactggcg 1621 cggctggaag aagcccgctg cgggcagcgg agcaggcagc ggcggcctga gcggcatggg 1681 cagcggcatg gcgatagcgt tcggagcagg tgcctccgcc tcctgcacgc cgggcggcag 1741 tggagcggcc atggccagca catccacctg cggcagatat tatgaagttt ccacattggc 1801 cgaactggca gcccgctgtg tggcctccta cataccgttc gagctggtgg agcacgtgta 1861 tccgccggtc ccagagcagc tccagctacg cattgcgttc tggagctttc cggacaacga 1921 ggaggacatc cggttgtatt cctgcctggc caacagctcg gcggatgagt tcaatcgcgg 1981 cgactcgttg tttcgcgtgc gagccgtcaa ggatccgctg caaataggct ttcacctgtc 2041 ggccagcgtg agtcagacgc cgcgtgcgta cttcaatgtg gcggtcacct ttgaccgccg 2101 acgcatctcc tcttgcaact gcacctgcac ctcgtccgcc tactggtgct cccacgtggt 2161 cgccgtttgt ctgcatcgca tccattgccc ccaggaagtc tgtttgcggg caccggtctc 2221 cgaatcgctg acccgcctgc aacgcgacca gctgcaaaag ttcgcccagt atctgatcag 2281 cgagctgccc cagcagatcc tgccgacggc ccagcgactc ctggatgagc tgctcagcgc 2341 ccagccgacg gcgatcaata cggtgtgcgg tgcacccgat ccaacggctg gggcctcgat 2401 caacgaccag accagctggt atctggacga gaagacgctg cataacaata tcaagcggat 2461 actcatcaag ttctgtttgc ccgccccgat tgtgtttagt gatgtcaact atctgaccaa 2521 ctcggctcca ccggcggcgg ccgaatggag ctctttgctg cggccgctgc gaggtcgtga 2581 accggagggc atgtggaatc tgctctcgat tgtgcgcgag atgtacaggc gctgcgatcg 2641 gaacgcagtg cgtctgctgg agatcatcac cgaggagtgc ttgtactgcg atcaaatact 2701 catctggtgg ttccagacca agctggccct gatgatgggc tcccacggcc attcgggcgg 2761 caagcactcg aacacgcact ccaattcgac ggccctgcag cacgcgtgca gttcgctgtg 2821 cgacgagatt gtggctctgt ggcggctggc cgctttgaat cccggcctgg cgccggacga 2881 gcgggacatg ctgcatgccc agtttactgc ctggcacctc aagatactcg atcgcgtggt 2941 caagagccgt atgatgccat cgtcgtacac gaacaagcat cagcagaatt cgcgatcgga 3001 aacggagttg tttattggct tcaagccggc cattgaggca tgctatttgg attgggaggg 3061 ttatcccatt cctggagtga ctcacaccca cgacacgaat cccatctact actcaccgtt 3121 cacctgcttc aagcacacgg acctcaaggg cgagtccagc aatcccggcc agctaaacgc 3181 cacccaggcg ctgatgacga acaacaagca ctataattac tttagtgcgt ccagcgatca 3241 tgcgggcatg catgcgggag cctttaagca gcgattggat cgacccttta gggagtcgcg 3301 attctatgcg aatccgagcg atttggatgg cggatcagcg gcattgcctg gcggaggagg 3361 aaacggcagg ttttccacgg gtaatctggg tgctgttgtc ggtggagcag gaggaggagg 3421 cagcgtcgca ggaggtgtca ccggcggtgg aggaggagga gtgaacaact cggttggagc 3481 agcgaccgtt gaagcgaata ccgtacagct gcagcagcag cagcagcagc tggtcagcgg 3541 ctcatcggga gtcggtggct cggcggcaaa tgccaaggca gccggaggag cagccgatgg 3601 caatcgctcg agtgccagca gcgagggatt ctgtgagaat gacgatttcg gcggcgacac 3661 cagcagcagt cacaattact gcccaccggg cggcggacaa gcggtggtgc ctggccagaa 3721 atcggccctc acggagtctg attcgcagag cagtttcgat gccgtgtcgc agcagagcaa 3781 ggatgagccg ccagtgggtg tgccagtggg tgtagaacaa gtgctctcca cctcggacac 3841 ttcgtcggcc tcgtcggcat cgtcatcggc ttcgactgcg tcggggagct cgaacagctc 3901 cacttcctcg atgctgatgg ctggtcagga ggctgctgtt ggaggagcag tgcagcaagc 3961 accgcgtcgc ctgagcaagg atgaatcctt tagcagcagc agcgatgagt tcaatcaggc 4021 gggaggatcg gcagcgggtg gcgtggctgc tggggaatcc gcacagggag gagcggtggc 4081 cacagctggc ggagatctca cgccagtgcc cagcacttcg gcagccgccc gagctgcctt 4141 ggccgccagt tgctccgcgg tgcctgtaac tacacctctt caagcaacca gttcggtcgg 4201 tgcttcggtg gaacagccca gcacctcatc cgcctccgtg cacgcagctc gaactttggc 4261 agcggctgtg gccgcctcca gcgacaagcc gcatgtattc tccaatgtcc ggcccacgga 4321 ggacgcttgg gacatactgt tggcccgagc cgagggactg catgcccatg gacacggcgg 4381 cgaggcctgc attttggccg ttcgcctggc cgagcagatg ctggccaatc cgcccaatct 4441 gctgctcgaa ctgccgcccg caccgaagag gaagggcaag aagcagaacg tgaatcccat 4501 ctcgcatcag ctgaccgtcg tcgcctccgc cacgctgtcc aaatgcgctt tcctctgcac 4561 cgtgctgtcg gagaattcgg agcactatca catcggcttt cggatatgtc tgtttgcgtt 4621 ggagatgccg cgaccgccgg ctagcaccaa gccgctggag gtgaagctgg ccaaccagga 4681 ggccgacata ctggcgctgc tcaagcgttt gccgctcggc tcggcggagc tgcaggtgat 4741 tcgcgagcga gccgagcagc tgcgcagcgg aaccttcaag acgcgcggcg aggctctgct 4801 gccgatcaac ctggctacgt ttattttcga tgctctggtt acgctcagtc cggccagtgg 4861 gtctgccatt ggacccggag tggcttcttc ttcaagctca agtggcgcag gaagtgcggc 4921 tggcaaatct atggtaaatc caggctcccg tttgatgctc tacaagcaca acagcgacga 4981 gagcctcgga ttcgatgctg cagtggccgc gcttggactg aaggccaatg tctcggaggc 5041 agagcatccg ctgctgtgcg agggaacccg ccggcagcgc ggcgatctcg ccctgaccct 5101 gctctcccac tacaaggacg agccgaggaa gatagccaag atcatggaga agctgctgga 5161 cagggaaata cacacgctgc tgaatgcacc gctcctgccc gcctactact cgagtaatcc 5221 gccggtgagg acgccgagca atcaaccgac gcggcgggag gagcacgatt atggaggctc 5281 cggctctggt ggatgcgcct cctccaactg caatccggtg gccaatctgt gtgagctgct 5341 gccagcggat tatggcagtg tgggaggaaa cagtcgaccg cacagctcga cgagcgccga 5401 actggagctg agcatgtgcg ccctgagcat ggcgagcagc cagtcgggcg gcggcggcgg 5461 aggaggagga ggaggaggag gaggtggcca gggcatggtg cccacaccga atgcggcggg 5521 aaatacggga acacccagtt ccagcagtac tacggttagc ggtgggcaga atcccaatgg 5581 gaatcccagt ggcagtggag gaggaaacgg tggcaacgga ggcggcggaa gttccagcag 5641 cagccggagc aaggagagcc gctacaaggg caagagggcc tacccatcga tacccaacca 5701 gccatccgag gccagtgccc actttatgtt cgagctggcc aagaatgtgc tgaccaaggc 5761 gggcggcaat agttccacct cgctgttcac ccaggcgagc accagccaga atcaccatgg 5821 accccatcgt gccctccaca tgtgcgcctt tcagctggga ctctatgctt tgggtctgca 5881 caactgcgtc agtcccaatt ggctgtcgcg aacctattcg tcgcatgtct cctggattct 5941 cggccaggcg atggagattg gtgcgccggc cattagtttc ctgatcgaca cttgggaggc 6001 gcacctcacg ccgcccgagg cggctggcat ggcggatcgg gcgtctcggg gatgggacag 6061 caatatggtt taccccgccg ccgagttggc cctctccgtt ctgccccacg ccgcagccct 6121 caatccgaac gagatccagc gcgcgatcct gcagtgcaag gagcagagcg atctaatgct 6181 ggagcgagcc tgtctcaccg tcgagacggc tgccaagggt ggcggtgtct atccggaggt 6241 cctcttccag gtggcccgct actggtacga gctgtacatg cgcaacacgc cgaacaacag 6301 cgagcacgag ccgcatgagg ataccatgga ccactcggcg gtcagtctga gcgctttgat 6361 tgagtcgcag cagcagcacg agcttcagca gcagcagcag cagcaggcgg tgcagcagca 6421 gcaggcagta cagcagcagc aacagcagca acaacaggtt gtgcaacagc aacagcaggt 6481 ggtgcagcaa cagcagctcg gcatgcccaa tcccggggtg ccgggcggac ccggaggact 6541 ccctgtggcc gtgcccccgc ccgttgtggg ctctgtgccg aatccgcagg cccagttcca 6601 gcccgtgggc gtcgcctcac tggctcccct cggcctggcg ccctatccgc cgtatagctt 6661 ctgccagggc ctctacgctc atcatcacaa cctgagctat ccgcccggtc agatgcaaat 6721 gtacatctcg gcgggaccgc cgccgccgcc gcagggatat ggtggctacc agcaggcgcc 6781 gccccagcag ccgcccaatc agcagcagca gcagcaggtg gtgcagcagc aacagcagca 6841 ggtggtccag cagcagcagg tccagatggc gggtcaggcg ccgccgggtc atccgggaca 6901 gcaggttcat ccggggcagc cgccgtctgg cttccagcag ccaccgccgc cgggagcttt 6961 ccagacgctg ccgccgcagg cctaccaggc gatgcaggcg ggtccgccgg gaccaccgat 7021 gggaccgcca cagggatatt acggcccacc gccacctccg cctccgaacg gcggaccacc 7081 gggagtgggc gttaacgtgg gcgtgatgcc aatgcgccag caccagcacc aacatcccgt 7141 ctaccccttc atgcagcagg cgccgccgca gccgcaacag cagcagcagc cgccgccttc 7201 gcagccacct gtgcgacaac gacaaccgca tcaattcaca cccacccagc tgcgctatct 7261 gctggccgcc tacaatgtgg gcatgctggc catggagacg ctggcgcgac gcgttcacga 7321 tgaccggccg caggcgaagt acgcccgaaa tccgccgtac ggcgaggatg tcaagtggct 7381 gctgcggatc agcaagaagc tgggcaccca gtatctgcat cagttctgca tctgtgcggt 7441 caactcgatc gtcagtccgt tcgtcctgca cgacgtggcc attgagtcgg cgcactatct 7501 gggcaggaat aaccaccagc tggtgatgca gcacctgcgc tcggcgctca caccgctcgt 7561 ccagaagtgc cagcagatgt acattcagtg catccatcag aagctgtacc acctgaccca 7621 aggtgactac gaggagtttg ccagcattgt ggtggcagcc cgcgccgcct ttcagattac 7681 ccccgagggc agcgcccaat tcaaggactg gctgcagtcc atcaagcgat ccaaatcgtg 7741 caagaaagag ctgtggaccc agatcaatgc ggctctgcaa agcaactcca aatgacaaag 7801 acttgactcc tgcaatctga tgacggcagt ggcaacagga acattggcga cgacggcggc 7861 ggctgcagcg acagcggtga ccgcagagtg caagtcaaca gcgccggctg gcggtagcag 7921 tgccaacaac